Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

20491847 .. 20493760

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G193200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTTTATTGGAGAAGCTCCCCTAGACTGAAAGATACTCTATCGACAAAACATTGGAGCAGTAAGGCACATGTGGATGAGTTGAAGAGAACAGGATGCTTGGTGTTATATGAAGTTGATGTTGATGACATGGACCAGCATCCCACCCTTACGTGCATGAAATTTGATATTGTCATCTTCAACTTTCCTCATGCAGGCCATTACTCTTGGCTATGCGAAAGAGACGATGAGCTCATACAAAAGCACAGGGAATTGTTGAAAGCATTCTTCAAAAGTGCCCGTGGGATGATCGGCGAAGGCGGGGAAATTCATGATTCACACAGGGATGACTACCCCTATGATCAATGGAAGCTGAAGGAGCTTGCTGAGAAAGCCGGCCTGGTTTTGAAAGAGAAAGTGTGGTTCGAAAAGTCGGACTACCCTGGCTACCACAACAAGAGAGGTGGAGGCATCCAGAGCAACAAAAAATTTCCTCTCAAAGAATGTTACACCTTCAAGTTTTCTCTGAAACCTGAATTCACTACTCATGAATTAATGCCTTCTAGCAGCCAAACAACCAGCATTCTTGATGATGATATATCATATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

197

Amino Acids

22.93

Weight (kDa)

6.36

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	4 cut(s)	161, 306, 467, 515
AcuI	CTGAAG	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	6 cut(s)	85, 181, 259, 271, 388, 496
AjnI	CCWGG	2 cut(s)	378, 421
AluBI	AGCT	4 cut(s)	18, 232, 352, 361
AluI	AGCT	4 cut(s)	18, 232, 352, 361
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	196, 376
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	4 cut(s)	161, 306, 467, 515
AseI	ATTAAT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	558
BciT130I	CCWGG	2 cut(s)	380, 423
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	24, 543
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	380, 423
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	380, 423
BmsI	GCATC	3 cut(s)	86, 148, 459
Bpu14I	TTCGAA	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	280, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	380, 423
BseDI	CCNNGG	2 cut(s)	280, 421
BseGI	GGATG	6 cut(s)	82, 101, 139, 291, 331, 450
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	357
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	558
BshFI	GGCC	2 cut(s)	198, 378
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	263, 561
BsnI	GGCC	2 cut(s)	198, 378
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	234, 280
Bsp143I	GATC	2 cut(s)	288, 340
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	198, 378
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	2 cut(s)	310, 526
BspT104I	TTCGAA	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	280, 421
BssMI	GATC	2 cut(s)	288, 340
Bst2UI	CCWGG	2 cut(s)	380, 423
Bst6I	CTCTTC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	153
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	196, 363, 376
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	6 cut(s)	82, 101, 139, 291, 331, 450
BstKTI	GATC	2 cut(s)	291, 343
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	288, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 371, 456
BstNI	CCWGG	2 cut(s)	380, 423
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	378, 421
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	198, 378
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	6 cut(s)	82, 101, 139, 291, 331, 450
Cac8I	GCNNGC	3 cut(s)	196, 363, 376
CciI	TCATGA	2 cut(s)	310, 526
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	6 cut(s)	71, 130, 157, 191, 311, 527
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	290, 342
DpnII	GATC	2 cut(s)	288, 340
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	378, 421
EcoT38I	GRGCYC	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	6 cut(s)	74, 133, 160, 194, 314, 530
FatI	CATG	6 cut(s)	70, 129, 156, 190, 310, 526
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	6 cut(s)	89, 108, 126, 298, 338, 437
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	2 cut(s)	24, 543
GluI	GCNGC	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	198, 378
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	6 cut(s)	74, 133, 160, 194, 314, 530
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	415, 507
Hpy188III	TCNNGA	4 cut(s)	311, 454, 527, 566
HpyAV	CCTTC	4 cut(s)	290, 349, 502, 549
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	156, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 371, 456
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	6 cut(s)	74, 133, 160, 194, 314, 530
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	288, 340
LmnI	GCTCC	3 cut(s)	23, 57, 358
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	3 cut(s)	86, 148, 459
MaeI	CTAG	2 cut(s)	24, 543
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	2 cut(s)	290, 342
MboI	GATC	2 cut(s)	288, 340
MboII	GAAGA	3 cut(s)	97, 169, 259
MhlI	GDGCHC	2 cut(s)	234, 280
MluCI	AATT	6 cut(s)	161, 251, 306, 467, 515, 530
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	198, 434, 440, 483
MroNI	GCCGGC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	533, 589
MslI	CAYNNNNRTG	2 cut(s)	75, 324
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	380, 423
Mva1269I	GAATGC	2 cut(s)	263, 561
MvaI	CCWGG	2 cut(s)	380, 423
MwoI	GCNNNNNNNGC	3 cut(s)	358, 371, 456
NaeI	GCCGGC	1 cut(s)	376
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	2 cut(s)	288, 340
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	6 cut(s)	74, 133, 160, 194, 314, 530
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	2 cut(s)	310, 526
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	2 cut(s)	263, 561
PdiI	GCCGGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	548
Ppu21I	YACGTR	1 cut(s)	153
PscI	ACATGT	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	378, 421
PspGI	CCWGG	2 cut(s)	378, 421
PspPI	GGNCC	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	75, 324
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	533, 589
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	2 cut(s)	288, 340
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	380, 423
SduI	GDGCHC	2 cut(s)	234, 280
SetI	ASST	8 cut(s)	20, 155, 234, 354, 363, 445, 494, 514
SfaNI	GCATC	3 cut(s)	86, 148, 459
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	75, 324
Sse9I	AATT	6 cut(s)	161, 251, 306, 467, 515, 530
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	24, 543
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	378, 421
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	44, 405
TasI	AATT	6 cut(s)	161, 251, 306, 467, 515, 530
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	533, 589
Tru9I	TTAA	2 cut(s)	533, 589
TseI	GCWGC	1 cut(s)	546
TspDTI	ATGAA	4 cut(s)	126, 173, 299, 543
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	192
XapI	RAATTY	4 cut(s)	161, 306, 467, 515
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	24, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.