Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

15164480 .. 15165331

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGCGGTGGATTGAGCACTACTCTAGCTCACAGCAGATACTGCTGGTTGGAGAAGGCGACTTCTCATTCTCTGCTTGCTTGGCTCGAGCTTTTGGCTACGCTCCTAACATGGTGGCTACTTCTCTCGACTCCCAAGAAGCTCTGTGGGAAAAGCATTGGAGCTGTGTGTCACACTTGGATGAGTTGAGGGGGAGAGGATGCCTAGTGTTGCATGATGTGAATGTGCATGACATGGACCTCCATTACATCCTGAAATGGAAGATATTTGATGTTATCATCTTCAACTTTCCTCATGCAGGGCATTACCCTTGGCTCCGTGAGAGAGATAATCAGCTCATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

115

Amino Acids

13.5

Weight (kDa)

5.65

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	15 - 103	1.5e-26	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	5 cut(s)	30, 92, 143, 165, 337
AluI	AGCT	5 cut(s)	30, 92, 143, 165, 337
Alw21I	GWGCWC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	27, 206
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	317
BmsI	GCATC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	3 cut(s)	187, 206, 249
BseLI	CCNNNNNNNGG	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	187, 206, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 83
BtsCI	GGATG	3 cut(s)	187, 206, 249
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	5 cut(s)	112, 215, 230, 235, 296
CviJI	RGCY	9 cut(s)	30, 86, 92, 99, 119, 143, 165, 316, 337
CviKI_1	RGCY	9 cut(s)	30, 86, 92, 99, 119, 143, 165, 316, 337
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	5 cut(s)	115, 218, 233, 238, 299
FaiI	YATR	5 cut(s)	113, 216, 231, 236, 297
FatI	CATG	5 cut(s)	111, 214, 229, 234, 295
FokI	GGATG	3 cut(s)	194, 213, 236
FspBI	CTAG	2 cut(s)	27, 206
Hin1II	CATG	5 cut(s)	115, 218, 233, 238, 299
HinfI	GANTC	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	128, 253
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	214, 229, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 83
Hsp92II	CATG	5 cut(s)	115, 218, 233, 238, 299
LmnI	GCTCC	4 cut(s)	4, 109, 162, 321
LpnPI	CCDG	3 cut(s)	32, 266, 285
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	27, 206
MaeIII	GTNAC	1 cut(s)	171
MbiI	CCGCTC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	274, 274
MhlI	GDGCHC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	183, 191, 251, 303
MslI	CAYNNNNRTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	43, 83
NlaIII	CATG	5 cut(s)	115, 218, 233, 238, 299
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	6 cut(s)	32, 94, 145, 167, 243, 339
SfaNI	GCATC	1 cut(s)	191
Sfr274I	CTCGAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	27, 206
StyI	CCWWGG	1 cut(s)	311
TaqI	TCGA	2 cut(s)	88, 129
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	87
XspI	CTAG	2 cut(s)	27, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.