Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

10260718 .. 10262720

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1133600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGAGGTGGATTGAGCACTACAACAGCTCCCAAGAGATACTGCTTGTTGGGGAAGGTGACTTCTCGTTTTCTGCTTGCTTGGCTCGAGCTTTTGGGTCTGCTACTAACATGGTGGCCACTTCTCTTGAATCCCAAGGTTCTTTGTTGGCAAAACATTGGAGTAGTTGGTCACATTTGGAAGAGCTGAGGAGGATGGGGTGCTTGGTGCTGCATGGAGTTGATGTGCATAAGATGGACCTCCATCCTGTCCTCAAATGGAGGGAATTTGATGTCATCATCTTCAACTTTCCTCATGCAGGTCATTACTCTTGGTTACGTGAAAAGGACTATGAGCTTATTCAAATGCACAGGGAGTTGCTGAAAGGATTTTTCGAAAGTGCCCGTTGCATGCTTAGCTATGGTGGGGAAATTCATGTTACAACCCGGGATGACTACCCCTATAACAGATGGAATGTGGAAGGACTTGCGGAGGAAGCTGGCCTGATCTTGAGTGATAAAGTGATCTTCAATAAATCGGCCTACCCTGGCTACCAGAATAAGAGAGGCGGCGACATGAAGGGCAACCAAACATTTCGTCTCCGAAATTGTTACACCTTCATATTTTCTGTGCCAGATGGGAGCACTTATGATCAAATGTCTCTTTGCAGTGAAATAACCAGCAGTGGCAGTTATTATATGAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

230

Amino Acids

26.43

Weight (kDa)

5.92

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	15 - 182	1.6e-53	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
AciI	CCGC	2 cut(s)	470, 549
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	266, 411
AfiI	CCNNNNNNNGG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	131, 286, 344, 511
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	6 cut(s)	30, 92, 187, 337, 399, 479
AluI	AGCT	6 cut(s)	30, 92, 187, 337, 399, 479
Alw21I	GWGCWC	2 cut(s)	21, 626
Alw26I	GTCTC	2 cut(s)	584, 645
Ama87I	CYCGRG	2 cut(s)	87, 426
AoxI	GGCC	3 cut(s)	117, 481, 519
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	266, 411
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	2 cut(s)	427, 428
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	375
AvaI	CYCGRG	2 cut(s)	87, 426
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	21, 626
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	5 cut(s)	190, 229, 252, 444, 611
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	2 cut(s)	427, 428
BcoDI	GTCTC	2 cut(s)	584, 645
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	212, 550
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	2 cut(s)	213, 551
Bme1390I	CCNGG	3 cut(s)	427, 428, 528
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	2 cut(s)	87, 426
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	3 cut(s)	427, 428, 528
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu1102I	GCTNAGC	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	2 cut(s)	427, 428
BsaAI	YACGTR	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	136, 426, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	136, 426, 526
BseGI	GGATG	3 cut(s)	201, 244, 436
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	3 cut(s)	119, 483, 521
BsiHKAI	GWGCWC	2 cut(s)	21, 626
BsiHKCI	CYCGRG	2 cut(s)	87, 426
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	584, 645
BsmBI	CGTCTC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	119, 483, 521
BsoBI	CYCGRG	2 cut(s)	87, 426
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	21, 385, 626
Bsp143I	GATC	3 cut(s)	486, 504, 631
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	2 cut(s)	470, 549
BspANI	GGCC	3 cut(s)	119, 483, 521
BspCNI	CTCAG	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	136, 426, 526
BssMI	GATC	3 cut(s)	486, 504, 631
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	3 cut(s)	79, 392, 481
BstDEI	CTNAG	2 cut(s)	188, 395
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	201, 244, 436
BstKTI	GATC	3 cut(s)	489, 507, 634
BstMAI	GTCTC	2 cut(s)	584, 645
BstMBI	GATC	3 cut(s)	486, 504, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 396, 476
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	394, 688
BstSCI	CCNGG	3 cut(s)	425, 426, 526
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	119, 483, 521
BtsCI	GGATG	3 cut(s)	201, 244, 436
BtsI	GCAGTG	2 cut(s)	655, 670
BtsIMutI	CAGTG	2 cut(s)	655, 670
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	79, 392, 481
Cfr13I	GGNCC	1 cut(s)	238
Cfr9I	CCCGGG	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	7 cut(s)	112, 215, 296, 391, 416, 556, 685
DdeI	CTNAG	2 cut(s)	188, 395
DpnI	GATC	3 cut(s)	488, 506, 633
DpnII	GATC	3 cut(s)	486, 504, 631
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	2 cut(s)	87, 426
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	7 cut(s)	115, 218, 299, 394, 419, 559, 688
FatI	CATG	7 cut(s)	111, 214, 295, 390, 415, 555, 684
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	212, 550
FokI	GGATG	3 cut(s)	208, 231, 443
Fsp4HI	GCNGC	2 cut(s)	212, 550
GluI	GCNGC	2 cut(s)	212, 550
HaeIII	GGCC	3 cut(s)	119, 483, 521
HapII	CCGG	1 cut(s)	427
Hin1II	CATG	7 cut(s)	115, 218, 299, 394, 419, 559, 688
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	584
Hpy188III	TCNNGA	2 cut(s)	128, 490
HpyAV	CCTTC	4 cut(s)	50, 455, 553, 607
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	6 cut(s)	214, 229, 299, 349, 390, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 396, 476
HpyF3I	CTNAG	2 cut(s)	188, 395
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	7 cut(s)	115, 218, 299, 394, 419, 559, 688
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	486, 504, 631
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	35, 621
Lsp1109I	GCAGC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	5 cut(s)	59, 171, 315, 418, 590
MalI	GATC	3 cut(s)	488, 506, 633
MboI	GATC	3 cut(s)	486, 504, 631
MboII	GAAGA	3 cut(s)	194, 274, 499
MhlI	GDGCHC	3 cut(s)	21, 385, 626
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	3 cut(s)	266, 411, 586
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	8 cut(s)	183, 186, 251, 255, 263, 303, 466, 539
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	3 cut(s)	427, 428, 528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	83, 396, 476
NciI	CCSGG	2 cut(s)	427, 428
NdeII	GATC	3 cut(s)	486, 504, 631
NlaIII	CATG	7 cut(s)	115, 218, 299, 394, 419, 559, 688
NmuCI	GTSAC	2 cut(s)	59, 171
NspI	RCATGY	2 cut(s)	394, 688
NspV	TTCGAA	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	87
PciI	ACATGT	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	213, 551
Ppu21I	YACGTR	1 cut(s)	320
PscI	ACATGT	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	212, 550
Sau3AI	GATC	3 cut(s)	486, 504, 631
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	3 cut(s)	427, 428, 528
SduI	GDGCHC	3 cut(s)	21, 385, 626
Sfr274I	CTCGAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	87
SmaI	CCCGGG	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	87, 490
SmoI	CTYRAG	2 cut(s)	87, 490
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	3 cut(s)	266, 411, 586
SsiI	CCGC	2 cut(s)	470, 549
StyD4I	CCNGG	3 cut(s)	425, 426, 526
StyI	CCWWGG	1 cut(s)	136
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	88, 375
TasI	AATT	3 cut(s)	266, 411, 586
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	2 cut(s)	655, 670
TseFI	GTSAC	2 cut(s)	59, 171
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	2 cut(s)	59, 171
TspDTI	ATGAA	3 cut(s)	404, 572, 589
TspMI	CCCGGG	1 cut(s)	426
TspRI	CASTG	2 cut(s)	655, 670
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	2 cut(s)	266, 411
XceI	RCATGY	2 cut(s)	394, 688
XhoI	CTCGAG	1 cut(s)	87
XmaI	CCCGGG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.