Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

10541519 .. 10542963

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1120900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTAAGAAACAAAGATGGATAGGACACTACTCTAGCTCTCACAAAATACTCTTGGTTGGTGAGGGAGACTTCTCATTTTCTGCCTGTTTGGCTAGAGCATTTCGCTCCGCCGCGAACATGGTTGCTACGACTCTCGAATCCGAAGGTAAAATATATGGACTCCTTGGATGCACTGAGGCACATTTGGAGGAGTTGGAGAGAAGAGGGTGCTTGGTGTTGTATGAAGTCAATGTATATGTCATGGACCGTCATCCCACACTGAAGTCTATGAAATTTGATGTTATCATATTCAACTTTCCTCATGCAGGTCATTACCATCGGCTAATCGAAACCGACGAGGAGCTTATAGAATTGCACAGACATTTGTTAAAAGCGTTTTTCAAAAGCGCCCGCGGGATGCTCAGCAAAGGTGGTGAAATTCATGTTTCACACAGGGTAGACTACCCGTATGATCAATGGAAGTTGAAGGAGCTTGCTGAGAAAGCAGGCCTGTTTTTGAAAGAGAAAGTGTGGTTCGACAAATCGGACTACCCTGGCTACCACAATAAGAGAGGTGGCGGCATCCAGAGCAACAAAACGTTTCCTCTAACAAACAAGGAATGTTACACCTCCAAATTCTCTCTCAAACATGCGAGTTCTGAAATTTCTGTTTGTAATTCGACAACCAGCATTTTTAGTGATGTCCCTTCACCACCTGGCTATCAGGGTTACATTTGTCCTCCAGCTCCTCCAAGTCCACCCTTACGAGAGATTCTTGGGTCTGGCATCCAGACCACGAGCCGGTGCGAACCTAAGACACAAAACCCCCCACATGACCCACCACCTCTTGTTTTGAGACCCACCACTAGCCCATGTAATGATCCCAACCCGCCCTCACACCACTCCATGGCCCACTGCCTCCAGGTTCCGGAGGAAAGAATTTCTCCACCCTTACCTCCTTCCTGCCAAGATGATGATGACCCTCCAGCTCCCCCAACCCCACCTCCTTCACGCCAAGTAGATGATGACAACGGCTGCTGCTCAATCCTTGGAGGCTGGTATGCGTATTCTGTCCTTGTCCCAATACCCGTACTAGCTTTCAGTTGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

365

Amino Acids

40.54

Weight (kDa)

6.62

Isoelectric Point (pI)

64.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	18 - 185	4e-49	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	889
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	116, 396
AccIII	TCCGGA	1 cut(s)	910
AciI	CCGC	6 cut(s)	111, 114, 394, 396, 561, 872
AclI	AACGTT	1 cut(s)	581
AclWI	GGATC	1 cut(s)	857
AcsI	RAATTY	5 cut(s)	275, 420, 617, 645, 921
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	1074
AfiI	CCNNNNNNNGG	4 cut(s)	308, 783, 889, 910
AgsI	TTSAA	4 cut(s)	295, 385, 469, 502
AjnI	CCWGG	3 cut(s)	535, 697, 903
AluBI	AGCT	6 cut(s)	39, 346, 475, 728, 971, 1079
AluI	AGCT	6 cut(s)	39, 346, 475, 728, 971, 1079
Alw26I	GTCTC	2 cut(s)	63, 832
AlwI	GGATC	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	2 cut(s)	490, 891
ApeKI	GCWGC	2 cut(s)	1017, 1020
ApoI	RAATTY	5 cut(s)	275, 420, 617, 645, 921
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	247, 892
AsuHPI	GGTGA	3 cut(s)	74, 428, 684
AvaII	GGWCC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	778
BbvI	GCAGC	2 cut(s)	1004, 1007
BccI	CCATC	2 cut(s)	12, 327
BceAI	ACGGC	1 cut(s)	1030
BciT130I	CCWGG	3 cut(s)	537, 699, 905
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	63, 832
BfaI	CTAG	4 cut(s)	36, 96, 849, 1076
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	114, 562, 1018, 1021
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	4 cut(s)	115, 563, 1019, 1022
Bme1390I	CCNGG	3 cut(s)	537, 699, 905
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 892
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	3 cut(s)	537, 699, 905
BmsI	GCATC	4 cut(s)	161, 390, 573, 777
BpmI	CTGGAG	3 cut(s)	708, 887, 951
Bpu1102I	GCTNAGC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	832
BsaJI	CCNNGG	5 cut(s)	166, 394, 535, 888, 1030
BsaWI	WCCGGW	1 cut(s)	910
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 783, 889, 910
Bse118I	RCCGGY	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	3 cut(s)	537, 699, 905
BseDI	CCNNGG	5 cut(s)	166, 394, 535, 888, 1030
BseGI	GGATG	5 cut(s)	176, 253, 405, 564, 768
BseLI	CCNNNNNNNGG	4 cut(s)	308, 783, 889, 910
BseMII	CTCAG	3 cut(s)	168, 418, 471
BseRI	GAGGAG	3 cut(s)	206, 356, 720
BseXI	GCAGC	2 cut(s)	1004, 1007
Bsh1236I	CGCG	2 cut(s)	116, 396
BshFI	GGCC	2 cut(s)	492, 893
BsiSI	CCGG	2 cut(s)	784, 911
BslFI	GGGAC	2 cut(s)	671, 1046
BslI	CCNNNNNNNGG	4 cut(s)	308, 783, 889, 910
BsmAI	GTCTC	2 cut(s)	63, 832
BsmFI	GGGAC	2 cut(s)	671, 1046
BsnI	GGCC	2 cut(s)	492, 893
Bso31I	GGTCTC	1 cut(s)	832
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	2 cut(s)	454, 862
Bsp1720I	GCTNAGC	1 cut(s)	404
Bsp19I	CCATGG	1 cut(s)	888
BspACI	CCGC	6 cut(s)	111, 114, 394, 396, 561, 872
BspANI	GGCC	2 cut(s)	492, 893
BspCNI	CTCAG	3 cut(s)	169, 417, 472
BspEI	TCCGGA	1 cut(s)	910
BspFNI	CGCG	2 cut(s)	116, 396
BspLI	GGNNCC	1 cut(s)	909
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	857
BspTNI	GGTCTC	1 cut(s)	832
BsrFI	RCCGGY	1 cut(s)	783
BssAI	RCCGGY	1 cut(s)	783
BssECI	CCNNGG	5 cut(s)	166, 394, 535, 888, 1030
BssMI	GATC	2 cut(s)	454, 862
BssSI	CACGAG	1 cut(s)	778
BssT1I	CCWWGG	3 cut(s)	166, 888, 1030
Bst2BI	CACGAG	1 cut(s)	778
Bst2UI	CCWGG	3 cut(s)	537, 699, 905
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	394, 477, 490
BstDEI	CTNAG	4 cut(s)	177, 404, 480, 795
BstDSI	CCRYGG	2 cut(s)	394, 888
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	5 cut(s)	176, 253, 405, 564, 768
BstFNI	CGCG	2 cut(s)	116, 396
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	457, 865
BstMAI	GTCTC	2 cut(s)	63, 832
BstMBI	GATC	2 cut(s)	454, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 485, 570
BstNI	CCWGG	3 cut(s)	537, 699, 905
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	535, 697, 903
BstUI	CGCG	2 cut(s)	116, 396
BstV1I	GCAGC	2 cut(s)	1004, 1007
BsuRI	GGCC	2 cut(s)	492, 893
BtgI	CCRYGG	2 cut(s)	394, 888
BtsCI	GGATG	5 cut(s)	176, 253, 405, 564, 768
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	3 cut(s)	174, 260, 895
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	3 cut(s)	394, 477, 490
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	783
Cfr13I	GGNCC	2 cut(s)	247, 892
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	1073
CviAII	CATG	8 cut(s)	121, 244, 305, 425, 632, 815, 855, 889
CviQI	GTAC	1 cut(s)	1073
DdeI	CTNAG	4 cut(s)	177, 404, 480, 795
DpnI	GATC	2 cut(s)	456, 864
DpnII	GATC	2 cut(s)	454, 862
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	100
Eco130I	CCWWGG	3 cut(s)	166, 888, 1030
Eco147I	AGGCCT	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	832
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	535, 697, 903
EcoT14I	CCWWGG	3 cut(s)	166, 888, 1030
ErhI	CCWWGG	3 cut(s)	166, 888, 1030
FaeI	CATG	8 cut(s)	124, 247, 308, 428, 635, 818, 858, 892
FaqI	GGGAC	2 cut(s)	671, 1046
FatI	CATG	8 cut(s)	120, 243, 304, 424, 631, 814, 854, 888
FauI	CCCGC	3 cut(s)	389, 401, 879
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	114, 562, 1018, 1021
FokI	GGATG	5 cut(s)	183, 240, 412, 551, 755
Fsp4HI	GCNGC	4 cut(s)	114, 562, 1018, 1021
FspBI	CTAG	4 cut(s)	36, 96, 849, 1076
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	4 cut(s)	114, 562, 1018, 1021
GsuI	CTGGAG	3 cut(s)	708, 887, 951
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	492, 893
HapII	CCGG	2 cut(s)	784, 911
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	8 cut(s)	124, 247, 308, 428, 635, 818, 858, 892
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	4 cut(s)	133, 140, 162, 754
HpaII	CCGG	2 cut(s)	784, 911
HphI	GGTGA	3 cut(s)	74, 428, 684
Hpy166II	GTNNAC	2 cut(s)	442, 740
Hpy188I	TCNGA	3 cut(s)	145, 529, 643
Hpy188III	TCNNGA	4 cut(s)	137, 568, 772, 911
Hpy8I	GTNNAC	2 cut(s)	442, 740
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	5 cut(s)	140, 463, 699, 951, 999
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	4 cut(s)	174, 308, 358, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 485, 570
HpyF3I	CTNAG	4 cut(s)	177, 404, 480, 795
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	8 cut(s)	124, 247, 308, 428, 635, 818, 858, 892
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	910
Ksp22I	TGATCA	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	454, 862
LmnI	GCTCC	5 cut(s)	113, 343, 472, 733, 976
Lsp1109I	GCAGC	2 cut(s)	1004, 1007
LweI	GCATC	4 cut(s)	161, 390, 573, 777
MaeI	CTAG	4 cut(s)	36, 96, 849, 1076
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	605, 710
MalI	GATC	2 cut(s)	456, 864
MboI	GATC	2 cut(s)	454, 862
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	1 cut(s)	1090
MluCI	AATT	8 cut(s)	275, 353, 420, 617, 645, 658, 921, 1090
MlyI	GAGTC	2 cut(s)	127, 156
MmeI	TCCRAC	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	910
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	784, 911
MspR9I	CCNGG	3 cut(s)	537, 699, 905
MunI	CAATTG	1 cut(s)	1090
MvaI	CCWGG	3 cut(s)	537, 699, 905
MvnI	CGCG	2 cut(s)	116, 396
MwoI	GCNNNNNNNGC	3 cut(s)	92, 485, 570
NcoI	CCATGG	1 cut(s)	888
NdeII	GATC	2 cut(s)	454, 862
NlaIII	CATG	8 cut(s)	124, 247, 308, 428, 635, 818, 858, 892
NlaIV	GGNNCC	1 cut(s)	909
NspI	RCATGY	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	140, 754
PflMI	CCANNNNNTGG	1 cut(s)	889
PkrI	GCNGC	4 cut(s)	115, 563, 1019, 1022
PleI	GAGTC	2 cut(s)	127, 156
PpsI	GAGTC	2 cut(s)	127, 156
Psp1406I	AACGTT	1 cut(s)	581
Psp6I	CCWGG	3 cut(s)	535, 697, 903
PspGI	CCWGG	3 cut(s)	535, 697, 903
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	2 cut(s)	247, 892
RsaI	GTAC	1 cut(s)	1074
RsaNI	GTAC	1 cut(s)	1073
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	4 cut(s)	114, 562, 1018, 1021
Sau3AI	GATC	2 cut(s)	454, 862
Sau96I	GGNCC	2 cut(s)	247, 892
SchI	GAGTC	2 cut(s)	127, 156
ScrFI	CCNGG	3 cut(s)	537, 699, 905
SfaNI	GCATC	4 cut(s)	161, 390, 573, 777
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	8 cut(s)	275, 353, 420, 617, 645, 658, 921, 1090
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	6 cut(s)	111, 114, 394, 396, 561, 872
SspMI	CTAG	4 cut(s)	36, 96, 849, 1076
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	535, 697, 903
StyI	CCWWGG	3 cut(s)	166, 888, 1030
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	4 cut(s)	138, 330, 519, 662
TasI	AATT	8 cut(s)	275, 353, 420, 617, 645, 658, 921, 1090
TauI	GCSGC	2 cut(s)	116, 564
TfiI	GAWTC	2 cut(s)	140, 754
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	3 cut(s)	181, 267, 902
TseI	GCWGC	2 cut(s)	1017, 1020
TspDTI	ATGAA	3 cut(s)	240, 287, 413
TspRI	CASTG	3 cut(s)	181, 267, 902
Van91I	CCANNNNNTGG	1 cut(s)	889
VpaK11BI	GGWCC	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	306
XapI	RAATTY	5 cut(s)	275, 420, 617, 645, 921
XceI	RCATGY	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	4 cut(s)	36, 96, 849, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.