Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

20857598 .. 20858643

Gene Structure 1046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55803.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGGGAGCTCTCGGAGCTTAACAGAGACAGAGACGGTGATGAAGAAGTGTGGGTCAAACACTATTCATCCAAGCACCAGATACTTCTCGTAGGCGAAGGAGATTTCTCCTTCTCTTGCAGCTTAGCCACTTGCTTCGGCTCTGCTTCCAATATCTATGCTTCCTCTCTCGATTCATACGATGATGTGGTTAGAAAATACAAGAATGCAAGATCAAATCTTGAAACATTGAAGAGACTTGGAGCTTTCCTTTTACATGGAGTTGATGCTACCACACTGCATTTTCATCCTGATCTTCGTTATAGAAGATTCGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCACAGGAAAGAGTCTGATCCCTGTCAAATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

127

Amino Acids

14.73

Weight (kDa)

6.64

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	29 - 122	1.9e-32	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	224, 232, 328
AluBI	AGCT	4 cut(s)	10, 19, 123, 245
AluI	AGCT	4 cut(s)	10, 19, 123, 245
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	21, 27, 229
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	120
AsiGI	ACCGGT	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	132
BcoDI	GTCTC	3 cut(s)	21, 27, 229
BisI	GCNGC	1 cut(s)	121
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	122
BmsI	GCATC	1 cut(s)	256
Bpu1102I	GCTNAGC	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	341
BseGI	GGATG	2 cut(s)	68, 286
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	316
BshTI	ACCGGT	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	3 cut(s)	21, 27, 229
BsmBI	CGTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	212, 292, 313, 364
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	341
BssMI	GATC	4 cut(s)	212, 292, 313, 364
Bst4CI	ACNGT	2 cut(s)	38, 381
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	68, 286
BstKTI	GATC	4 cut(s)	215, 295, 316, 367
BstMAI	GTCTC	3 cut(s)	21, 27, 229
BstMBI	GATC	4 cut(s)	212, 292, 313, 364
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	68, 286
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	341
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	6 cut(s)	10, 19, 123, 128, 141, 245
CviKI_1	RGCY	6 cut(s)	10, 19, 123, 128, 141, 245
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	4 cut(s)	214, 294, 315, 366
DpnII	GATC	4 cut(s)	212, 292, 313, 364
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	159, 178, 258, 303
FatI	CATG	1 cut(s)	256
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	55, 273
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	1 cut(s)	260
HinfI	GANTC	3 cut(s)	173, 309, 359
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	16, 364
Hpy188III	TCNNGA	3 cut(s)	170, 221, 290
HpyAV	CCTTC	2 cut(s)	92, 121
HpyCH4III	ACNGT	2 cut(s)	38, 381
HpyCH4V	TGCA	3 cut(s)	120, 209, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	4 cut(s)	212, 292, 313, 364
LmnI	GCTCC	3 cut(s)	7, 16, 242
LpnPI	CCDG	4 cut(s)	92, 303, 337, 355
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	256
MalI	GATC	4 cut(s)	214, 294, 315, 366
MboI	GATC	4 cut(s)	212, 292, 313, 364
MboII	GAAGA	5 cut(s)	56, 244, 287, 316, 318
MhlI	GDGCHC	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	1 cut(s)	175
MseI	TTAA	1 cut(s)	21
MspI	CCGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	4 cut(s)	212, 292, 313, 364
NlaIII	CATG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	173, 309
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	122
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	12
PvuI	CGATCG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	4 cut(s)	212, 292, 313, 364
SchI	GAGTC	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	4 cut(s)	12, 21, 125, 247
SfaNI	GCATC	1 cut(s)	256
SsiI	CCGC	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	38, 381
TaqI	TCGA	2 cut(s)	171, 312
TfiI	GAWTC	2 cut(s)	173, 309
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	4 cut(s)	57, 57, 165, 275
TspRI	CASTG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.