Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

10234571 .. 10235376

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1133400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGTAAAAAACAAAGACGGATAGGACACTACTCTAGCTCGCAGAAAATACTCTTGGTTGGTGAGGGAAACTTCTCATTTTCTGCCTCTTTGGCTAAAGCATTTCGCTCTGCCACGAACATGGTTGCTACCACTCTCAAATCCCAAGATACTTTATTGACAGAGCATAGGAGCTGTGAGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

63

Amino Acids

6.89

Weight (kDa)

9.74

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	18 - 61	8.2e-11	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	39, 174
AluI	AGCT	2 cut(s)	39, 174
AsuHPI	GGTGA	1 cut(s)	74
BfaI	CTAG	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	3 cut(s)	39, 95, 174
CviKI_1	RGCY	3 cut(s)	39, 95, 174
FaeI	CATG	1 cut(s)	124
FaiI	YATR	2 cut(s)	122, 168
FatI	CATG	1 cut(s)	120
FspBI	CTAG	1 cut(s)	36
Hin1II	CATG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	171, 181
MaeI	CTAG	1 cut(s)	36
MnlI	CCTC	3 cut(s)	58, 97, 172
MslI	CAYNNNNRTG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	119
SetI	ASST	2 cut(s)	41, 176
SgeI	CNNG	6 cut(s)	48, 52, 67, 127, 133, 158
SmiMI	CAYNNNNRTG	1 cut(s)	119
SspMI	CTAG	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	34
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.