Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000761.1

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

47551 .. 48115

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000761.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggcactagagaaaagaattgttcattatagtagctctcagaagatactcttggtgggtgagggagacttttcctttgctgcttgtttagccatagcatttggctctgctgccaacatagttgctacctcactcaactccgatccagagttgactaccacgagcttgtcttctttttgctatgagcagcatatgattatccaagaagagaatgtggcggtgacgaaactacctggcagaaaagcagatggagcgcagatcataggtatcgccggctctgtcaaagcactcaacacacgtgaaatacagccccaagaggcgtactccgcagtcagcacaatgatacaacctggtcttgatgatgtagtacagtgtgagaacttcccaaaagtccaggtaaccgtcgccgtttcgatcgagcgcgttgaagatgtaggggttgatattgtacccgctttgctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

154

Amino Acids

16.41

Weight (kDa)

4.61

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	3 cut(s)	218, 327, 453
AclWI	GGATC	1 cut(s)	137
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	323, 369, 450
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	3 cut(s)	232, 349, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	36, 165
AluI	AGCT	2 cut(s)	36, 165
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	80, 110, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	2 cut(s)	256, 423
AsuHPI	GGTGA	2 cut(s)	71, 232
BauI	CACGAG	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	67, 97, 199
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	3 cut(s)	234, 351, 395
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	461
BisI	GCNGC	3 cut(s)	81, 111, 188
BlsI	GCNGC	3 cut(s)	82, 112, 189
Bme1390I	CCNGG	3 cut(s)	234, 351, 395
BmrFI	CCNGG	3 cut(s)	234, 351, 395
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BsaAI	YACGTR	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	272
BseBI	CCWGG	3 cut(s)	234, 351, 395
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	67, 97, 199
Bsh1236I	CGCG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	142, 258, 414
BspACI	CCGC	3 cut(s)	218, 327, 453
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssMI	GATC	3 cut(s)	142, 258, 414
BssSI	CACGAG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	3 cut(s)	234, 351, 395
Bst4CI	ACNGT	2 cut(s)	372, 403
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	256, 423
BstKTI	GATC	3 cut(s)	145, 261, 417
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	3 cut(s)	142, 258, 414
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 251, 326
BstNI	CCWGG	3 cut(s)	234, 351, 395
BstPI	GGTNACC	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	232, 349, 393
BstSFI	CTRYAG	1 cut(s)	461
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	67, 97, 199
BstV2I	GAAGAC	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	2 cut(s)	256, 423
Cfr10I	RCCGGY	1 cut(s)	272
CsiI	ACCWGGT	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	322, 368, 449
CviJI	RGCY	6 cut(s)	36, 92, 105, 165, 276, 310
CviKI_1	RGCY	6 cut(s)	36, 92, 105, 165, 276, 310
CviQI	GTAC	3 cut(s)	322, 368, 449
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	3 cut(s)	144, 260, 416
DpnII	GATC	3 cut(s)	142, 258, 414
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	397
EcoRII	CCWGG	3 cut(s)	232, 349, 393
FaiI	YATR	7 cut(s)	30, 95, 119, 183, 192, 194, 263
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FauI	CCCGC	1 cut(s)	460
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	81, 111, 188
Fsp4HI	GCNGC	3 cut(s)	81, 111, 188
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	255, 422
GluI	GCNGC	3 cut(s)	81, 111, 188
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	2 cut(s)	256, 423
Hin6I	GCGC	2 cut(s)	254, 421
HinP1I	GCGC	2 cut(s)	254, 421
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	71, 232
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	42, 142
Hpy188III	TCNNGA	2 cut(s)	146, 356
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	372, 403
HpyCH4IV	ACGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 251, 326
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	298
HspAI	GCGC	2 cut(s)	254, 421
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	142, 258, 414
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	159, 219, 246, 286, 336, 363, 380, 407
Lsp1109I	GCAGC	3 cut(s)	67, 97, 199
MabI	ACCWGGT	1 cut(s)	349
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	220, 397
MalI	GATC	3 cut(s)	144, 260, 416
MboI	GATC	3 cut(s)	142, 258, 414
MboII	GAAGA	4 cut(s)	55, 162, 218, 440
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	3 cut(s)	55, 139, 310
MroNI	GCCGGC	1 cut(s)	272
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	234, 351, 395
MvaI	CCWGG	3 cut(s)	234, 351, 395
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	89, 251, 326
NaeI	GCCGGC	1 cut(s)	274
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	3 cut(s)	142, 258, 414
NgoMIV	GCCGGC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	82, 112, 189
Ple19I	CGATCG	1 cut(s)	417
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	3 cut(s)	232, 349, 393
PspCI	CACGTG	1 cut(s)	299
PspEI	GGTNACC	1 cut(s)	397
PspGI	CCWGG	3 cut(s)	232, 349, 393
PvuI	CGATCG	1 cut(s)	417
RsaI	GTAC	3 cut(s)	323, 369, 450
RsaNI	GTAC	3 cut(s)	322, 368, 449
SatI	GCNGC	3 cut(s)	81, 111, 188
Sau3AI	GATC	3 cut(s)	142, 258, 414
ScrFI	CCNGG	3 cut(s)	234, 351, 395
SetI	ASST	8 cut(s)	38, 131, 167, 235, 268, 301, 352, 399
SexAI	ACCWGGT	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	3 cut(s)	218, 327, 453
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	232, 349, 393
TaaI	ACNGT	2 cut(s)	372, 403
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	413, 417
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	367
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	80, 110, 187
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	14
TspRI	CASTG	1 cut(s)	377
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.