Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

67029126 .. 67031028

Gene Structure 1903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG498100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGCGGTGGATTGAGCACTACTCTAGCTCACAGCAGATACTGCTGGTTGGGGAAGGCGACTTCTCATTCTCTGCTTGCTTGGCTCGAGCTTTTGGTTACGCTCCTAACATGGTTGCTACCTCTCTCGACTCCCAAGAATCTCTGTGGGAAAAGCATTGGAGCTGTGTGTCACACTTGGATGAGTTGAGGGGGAGAGGATGCCTAGTGTTGCATGATGTGAATGTGCATGACATGGACCTCCATTACATCCTGAAATGGAAGAAATTTGATGTTATCATCTTCAACTTTCCTCATGCAGGGCATTACCCTTGGCTCCGTGAGAGAGATAATCAGCTCATTCAGATGCACAGGCAATTGCTTAGTGGGTTTTTTGCAAGCGCCCGAGTGATGCTTCGCTCTGGTGGTCAAATTCATGTGACAACCAGGGATGACTACCCATATAACATATGGAATGTGGAGGAACTTGCCGCTCAAGCAGGCCTGGTTTTGAGAGAGAAAGTGTGGTTCGAAAAGTCTGACTACCCTGGCTATCACAATAAGAGAGGCGGTGGCATTGACAGCAACAAGAAATTTCCACTGGGAGAGAGCTACACCTTCAAGTTTGTAGCTAAACCTTATTATATGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

210

Amino Acids

24.56

Weight (kDa)

6.83

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	15 - 182	1.6e-51	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	7, 473
AciI	CCGC	3 cut(s)	7, 471, 549
AcsI	RAATTY	3 cut(s)	266, 411, 572
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	286, 601
AjnI	CCWGG	3 cut(s)	425, 483, 526
AluBI	AGCT	6 cut(s)	30, 92, 165, 337, 591, 611
AluI	AGCT	6 cut(s)	30, 92, 165, 337, 591, 611
Alw21I	GWGCWC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	43
Ama87I	CYCGRG	2 cut(s)	87, 384
AoxI	GGCC	1 cut(s)	481
ApoI	RAATTY	3 cut(s)	266, 411, 572
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	510
AvaI	CYCGRG	2 cut(s)	87, 384
AvaII	GGWCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	21
BciT130I	CCWGG	3 cut(s)	427, 485, 528
BfaI	CTAG	2 cut(s)	27, 206
BfoI	RGCGCY	1 cut(s)	384
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	427, 485, 528
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	2 cut(s)	87, 384
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	3 cut(s)	427, 485, 528
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	3 cut(s)	191, 336, 381
BmuI	ACTGGG	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
Bpu14I	TTCGAA	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	311, 426, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	427, 485, 528
BseDI	CCNNGG	3 cut(s)	311, 426, 526
BseGI	GGATG	4 cut(s)	187, 206, 249, 436
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	87, 384
BslI	CCNNNNNNNGG	1 cut(s)	299
BsnI	GGCC	1 cut(s)	483
BsoBI	CYCGRG	2 cut(s)	87, 384
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	7, 471, 549
BspANI	GGCC	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	317
BspT104I	TTCGAA	1 cut(s)	510
BsrBI	CCGCTC	2 cut(s)	7, 473
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	311, 426, 526
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	3 cut(s)	427, 485, 528
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	79, 379, 481
BstDEI	CTNAG	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	4 cut(s)	187, 206, 249, 436
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 83, 476, 561
BstNI	CCWGG	3 cut(s)	427, 485, 528
BstSCI	CCNGG	3 cut(s)	425, 483, 526
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	187, 206, 249, 436
BtsIMutI	CAGTG	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	79, 379, 481
CaiI	CAGNNNCTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	6 cut(s)	112, 215, 230, 235, 296, 416
DdeI	CTNAG	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	311
Eco147I	AGGCCT	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	2 cut(s)	87, 384
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	425, 483, 526
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	6 cut(s)	115, 218, 233, 238, 299, 419
FatI	CATG	6 cut(s)	111, 214, 229, 234, 295, 415
FauNDI	CATATG	1 cut(s)	449
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	4 cut(s)	194, 213, 236, 443
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	27, 206
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	483
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	6 cut(s)	115, 218, 233, 238, 299, 419
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	131, 140
Hpy188I	TCNGA	2 cut(s)	345, 520
Hpy188III	TCNNGA	2 cut(s)	128, 253
HpyAV	CCTTC	2 cut(s)	50, 607
HpyCH4V	TGCA	5 cut(s)	214, 229, 299, 349, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 83, 476, 561
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	6 cut(s)	115, 218, 233, 238, 299, 419
HspAI	GCGC	1 cut(s)	381
LmnI	GCTCC	4 cut(s)	4, 109, 162, 321
LweI	GCATC	3 cut(s)	191, 336, 381
MaeI	CTAG	2 cut(s)	27, 206
MaeIII	GTNAC	3 cut(s)	98, 171, 418
MbiI	CCGCTC	2 cut(s)	7, 473
MboII	GAAGA	2 cut(s)	274, 274
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	4 cut(s)	266, 356, 411, 572
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	133, 183, 191, 251, 303, 454, 539
MslI	CAYNNNNRTG	2 cut(s)	180, 344
MspR9I	CCNGG	3 cut(s)	427, 485, 528
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	3 cut(s)	427, 485, 528
MwoI	GCNNNNNNNGC	4 cut(s)	43, 83, 476, 561
NdeI	CATATG	1 cut(s)	449
NlaIII	CATG	6 cut(s)	115, 218, 233, 238, 299, 419
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	171, 418
NspV	TTCGAA	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	3 cut(s)	425, 483, 526
PspGI	CCWGG	3 cut(s)	425, 483, 526
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	180, 344
SatI	GCNGC	1 cut(s)	471
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	427, 485, 528
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	3 cut(s)	191, 336, 381
Sfr274I	CTCGAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	510
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	180, 344
SmlI	CTYRAG	2 cut(s)	87, 474
SmoI	CTYRAG	2 cut(s)	87, 474
Sse9I	AATT	4 cut(s)	266, 356, 411, 572
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	7, 471, 549
SspMI	CTAG	2 cut(s)	27, 206
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	425, 483, 526
StyI	CCWWGG	1 cut(s)	311
TaqI	TCGA	3 cut(s)	88, 129, 510
TasI	AATT	4 cut(s)	266, 356, 411, 572
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	171, 418
Tsp45I	GTSAC	2 cut(s)	171, 418
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	3 cut(s)	266, 411, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	87
XspI	CTAG	2 cut(s)	27, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.