Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

8684608 .. 8685807

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTAAGAAACAGAGATGGATAGGACACTACTCTAGCTCTCATAAAATACTCTTGGTTGGTGAGGGAGACTTCTCATTTTCTGCCTGTTTGGCTAGAGCATTTTGCTCCGCCGCGAACATGGTTGCTACGACTCTCGAATCGGAAGATACTATATTGGTTGAGCATCGCAGCAGTGAGGCACATTTGGAGGAGTTGGAGAGAAGAGGGTGCTTGGTGTTGTATGAAGTCAACGTATATGTCATGGACCGTCATCCCACACTTAGGTCTATGAAATTTGATGTTATCATATTCAACTTTCCTCATGCGGGTCATTACCATCGGCTAGTCGAAACCGACGAGGAGCTTATAGAATTGCACAGACATTTGTTAAAAGCGTTTTTCAAAAGCGCCCGCGGGATGCTCAGCAAAGGTGGTGAAATTCATGTTTCACACAGGGTAGACTACCCGTATGATCAATGGAAGTTGAAGGAGCTTGCTGAGAAAGCAGGCCTGTTTTTGAAGGAGAAAGTGCGGTTCGACAAATCGGACTACCCTGGCTACCACAATAAGAGAGGTGGCGGCATCCAGAGCAACAAAATGTTTCCTCTAAAAAACAAGGAAAGTTACACCTTCAAATTCTCTCTCAAACATGCAAGTTCTGAAATTTCTGTTTGTGATCCGACAACCAGCATTGTTAGTGATGTCCCTTCGCCACCTGGCTATCAGGGTTACCTTTGTCCTCCAGCTCCTCCAAGCCCACCCGTACGAGAGATTCTTAGGTCTGGCATCCAGACACGAGCCGGTGCGAACCTAAGACACAAAACCCCCCGCATGACCCATCACCTCTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

279

Amino Acids

31.68

Weight (kDa)

9.07

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	18 - 185	4e-52	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	116, 396
AciI	CCGC	8 cut(s)	111, 114, 308, 394, 396, 514, 561, 811
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	4 cut(s)	275, 420, 617, 645
AfaI	GTAC	1 cut(s)	747
AfiI	CCNNNNNNNGG	2 cut(s)	264, 308
AgsI	TTSAA	5 cut(s)	295, 385, 469, 502, 616
AjnI	CCWGG	2 cut(s)	535, 697
AluBI	AGCT	4 cut(s)	39, 346, 475, 728
AluI	AGCT	4 cut(s)	39, 346, 475, 728
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	4 cut(s)	275, 420, 617, 645
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	74, 428, 815
AvaII	GGWCC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	3 cut(s)	12, 327, 828
BciT130I	CCWGG	2 cut(s)	537, 699
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	36, 96, 326
BfoI	RGCGCY	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	114, 172, 562
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	3 cut(s)	115, 173, 563
Bme1390I	CCNGG	2 cut(s)	537, 699
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	537, 699
BmsI	GCATC	4 cut(s)	175, 390, 573, 777
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	394, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 308
Bse118I	RCCGGY	1 cut(s)	782
BseBI	CCWGG	2 cut(s)	537, 699
BseDI	CCNNGG	2 cut(s)	394, 535
BseGI	GGATG	4 cut(s)	253, 405, 564, 768
BseLI	CCNNNNNNNGG	2 cut(s)	264, 308
BseMII	CTCAG	2 cut(s)	418, 471
BseRI	GAGGAG	3 cut(s)	206, 356, 720
BseXI	GCAGC	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	116, 396
BshFI	GGCC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	783
BsiWI	CGTACG	1 cut(s)	745
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	2 cut(s)	264, 308
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	454, 658
Bsp1720I	GCTNAGC	1 cut(s)	404
BspACI	CCGC	8 cut(s)	111, 114, 308, 394, 396, 514, 561, 811
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	417, 472
BspFNI	CGCG	2 cut(s)	116, 396
BspPI	GGATC	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	2 cut(s)	394, 535
BssMI	GATC	2 cut(s)	454, 658
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	2 cut(s)	537, 699
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	394, 477, 490
BstDEI	CTNAG	5 cut(s)	263, 404, 480, 758, 794
BstDSI	CCRYGG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	253, 405, 564, 768
BstFNI	CGCG	2 cut(s)	116, 396
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	457, 661
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	454, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 485, 570
BstNI	CCWGG	2 cut(s)	537, 699
BstNSI	RCATGY	1 cut(s)	635
BstPI	GGTNACC	1 cut(s)	710
BstSCI	CCNGG	2 cut(s)	535, 697
BstUI	CGCG	2 cut(s)	116, 396
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	253, 405, 564, 768
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	3 cut(s)	394, 477, 490
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	247
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	6 cut(s)	121, 244, 305, 425, 632, 814
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	5 cut(s)	263, 404, 480, 758, 794
DpnI	GATC	2 cut(s)	456, 660
DpnII	GATC	2 cut(s)	454, 658
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	535, 697
FaeI	CATG	6 cut(s)	124, 247, 308, 428, 635, 817
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	6 cut(s)	120, 243, 304, 424, 631, 813
FauI	CCCGC	4 cut(s)	301, 389, 401, 818
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	114, 172, 562
FokI	GGATG	4 cut(s)	240, 412, 551, 755
Fsp4HI	GCNGC	3 cut(s)	114, 172, 562
FspBI	CTAG	3 cut(s)	36, 96, 326
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	114, 172, 562
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	783
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	6 cut(s)	124, 247, 308, 428, 635, 817
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	133, 140, 754
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	3 cut(s)	74, 428, 815
Hpy166II	GTNNAC	2 cut(s)	232, 442
Hpy188I	TCNGA	4 cut(s)	145, 529, 643, 663
Hpy188III	TCNNGA	3 cut(s)	137, 568, 772
Hpy8I	GTNNAC	2 cut(s)	232, 442
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	4 cut(s)	463, 496, 622, 699
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	358, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 485, 570
HpyF3I	CTNAG	5 cut(s)	263, 404, 480, 758, 794
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	124, 247, 308, 428, 635, 817
HspAI	GCGC	1 cut(s)	390
Ksp22I	TGATCA	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	454, 658
LmnI	GCTCC	4 cut(s)	113, 343, 472, 733
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	4 cut(s)	175, 390, 573, 777
MaeI	CTAG	3 cut(s)	36, 96, 326
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	605, 710
MalI	GATC	2 cut(s)	456, 660
MboI	GATC	2 cut(s)	454, 658
MboII	GAAGA	2 cut(s)	158, 216
MluCI	AATT	5 cut(s)	275, 353, 420, 617, 645
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	177, 686
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	2 cut(s)	537, 699
MvaI	CCWGG	2 cut(s)	537, 699
MvnI	CGCG	2 cut(s)	116, 396
MwoI	GCNNNNNNNGC	3 cut(s)	92, 485, 570
NdeII	GATC	2 cut(s)	454, 658
NlaIII	CATG	6 cut(s)	124, 247, 308, 428, 635, 817
NspI	RCATGY	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	140, 754
Pfl23II	CGTACG	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	115, 173, 563
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	535, 697
PspEI	GGTNACC	1 cut(s)	710
PspGI	CCWGG	2 cut(s)	535, 697
PspLI	CGTACG	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	3 cut(s)	114, 172, 562
Sau3AI	GATC	2 cut(s)	454, 658
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	537, 699
SfaNI	GCATC	4 cut(s)	175, 390, 573, 777
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	5 cut(s)	275, 353, 420, 617, 645
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	8 cut(s)	111, 114, 308, 394, 396, 514, 561, 811
SspMI	CTAG	3 cut(s)	36, 96, 326
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	535, 697
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	138, 330, 519
TasI	AATT	5 cut(s)	275, 353, 420, 617, 645
TauI	GCSGC	2 cut(s)	116, 564
TfiI	GAWTC	2 cut(s)	140, 754
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	240, 287, 413
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	4 cut(s)	275, 420, 617, 645
XceI	RCATGY	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	36, 96, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.