Prokaryotic RING finger family 4
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G62370 |
| fragaria_vesca | FvH4_3g01290 |
| malus_domestica | MD05G1353900.v1.1 MD10G1328000.v1.1 |
| prunus_persica | Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1 |
| pyrus_communis | pycom10g27790 pycom17g07310 |
| rosa_chinensis | RchiOBHm_Chr5g0001841 |
| rosa_laevigata | RLG00000030976 |
| rosa_multiflora | Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00071270 Rroxscaffold_1G00074510 |
| rosa_rugosa | Rorug04G0393600 |
| rosa_samantha | Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000 |
| rosa_wichuraiana | Rw5G001420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 200, 341, 413, 461, 497 |
| AclWI | GGATC | 3 cut(s) | 266, 279, 452 |
| AcvI | CACGTG | 2 cut(s) | 308, 361 |
| AfaI | GTAC | 3 cut(s) | 280, 286, 393 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 281, 331 |
| AflIII | ACRYGT | 2 cut(s) | 305, 566 |
| AgsI | TTSAA | 1 cut(s) | 540 |
| AjiI | CACGTC | 2 cut(s) | 444, 567 |
| AjnI | CCWGG | 1 cut(s) | 252 |
| Alw26I | GTCTC | 3 cut(s) | 194, 197, 368 |
| AlwI | GGATC | 3 cut(s) | 266, 279, 452 |
| AspLEI | GCGC | 1 cut(s) | 358 |
| AsuC2I | CCSGG | 1 cut(s) | 276 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 375, 408 |
| BamHI | GGATCC | 1 cut(s) | 271 |
| BbrPI | CACGTG | 2 cut(s) | 308, 361 |
| BccI | CCATC | 1 cut(s) | 32 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BciT130I | CCWGG | 1 cut(s) | 254 |
| BcnI | CCSGG | 1 cut(s) | 276 |
| BcoDI | GTCTC | 3 cut(s) | 194, 197, 368 |
| BisI | GCNGC | 1 cut(s) | 498 |
| BlsI | GCNGC | 1 cut(s) | 499 |
| Bme1390I | CCNGG | 2 cut(s) | 254, 276 |
| BmgBI | CACGTC | 2 cut(s) | 444, 567 |
| BmiI | GGNNCC | 2 cut(s) | 273, 323 |
| BmrFI | CCNGG | 2 cut(s) | 254, 276 |
| BpuMI | CCSGG | 1 cut(s) | 276 |
| BsaAI | YACGTR | 3 cut(s) | 308, 361, 522 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 281, 331 |
| BseBI | CCWGG | 1 cut(s) | 254 |
| BseGI | GGATG | 1 cut(s) | 558 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 281, 331 |
| BseMII | CTCAG | 2 cut(s) | 134, 205 |
| BseRI | GAGGAG | 3 cut(s) | 359, 383, 386 |
| BsiSI | CCGG | 1 cut(s) | 275 |
| BslFI | GGGAC | 1 cut(s) | 577 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 281, 331 |
| BsmAI | GTCTC | 3 cut(s) | 194, 197, 368 |
| BsmBI | CGTCTC | 1 cut(s) | 194 |
| BsmFI | GGGAC | 1 cut(s) | 577 |
| Bsp143I | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| BspACI | CCGC | 5 cut(s) | 200, 341, 413, 461, 497 |
| BspCNI | CTCAG | 2 cut(s) | 135, 204 |
| BspLI | GGNNCC | 2 cut(s) | 273, 323 |
| BspPI | GGATC | 3 cut(s) | 266, 279, 452 |
| BssMI | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| Bst2UI | CCWGG | 1 cut(s) | 254 |
| Bst4CI | ACNGT | 4 cut(s) | 98, 396, 425, 584 |
| Bst6I | CTCTTC | 1 cut(s) | 478 |
| BstBAI | YACGTR | 3 cut(s) | 308, 361, 522 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 3 cut(s) | 23, 143, 191 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 329 |
| BstF5I | GGATG | 1 cut(s) | 558 |
| BstHHI | GCGC | 1 cut(s) | 358 |
| BstKTI | GATC | 5 cut(s) | 88, 274, 460, 591, 607 |
| BstMAI | GTCTC | 3 cut(s) | 194, 197, 368 |
| BstMBI | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| BstNI | CCWGG | 1 cut(s) | 254 |
| BstSCI | CCNGG | 2 cut(s) | 252, 274 |
| BstSNI | TACGTA | 1 cut(s) | 522 |
| BstX2I | RGATCY | 1 cut(s) | 271 |
| BstYI | RGATCY | 1 cut(s) | 271 |
| BtrI | CACGTC | 2 cut(s) | 444, 567 |
| BtsCI | GGATG | 1 cut(s) | 558 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| CfoI | GCGC | 1 cut(s) | 358 |
| CseI | GACGC | 1 cut(s) | 176 |
| CsiI | ACCWGGT | 1 cut(s) | 252 |
| Csp6I | GTAC | 3 cut(s) | 279, 285, 392 |
| CviJI | RGCY | 5 cut(s) | 142, 175, 312, 335, 500 |
| CviKI_1 | RGCY | 5 cut(s) | 142, 175, 312, 335, 500 |
| CviQI | GTAC | 3 cut(s) | 279, 285, 392 |
| DdeI | CTNAG | 3 cut(s) | 23, 143, 191 |
| DpnI | GATC | 5 cut(s) | 87, 273, 459, 590, 606 |
| DpnII | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| Eam1104I | CTCTTC | 1 cut(s) | 478 |
| EarI | CTCTTC | 1 cut(s) | 478 |
| Eco105I | TACGTA | 1 cut(s) | 522 |
| Eco72I | CACGTG | 2 cut(s) | 308, 361 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 329 |
| EcoRII | CCWGG | 1 cut(s) | 252 |
| Esp3I | CGTCTC | 1 cut(s) | 194 |
| FaiI | YATR | 2 cut(s) | 479, 519 |
| FaqI | GGGAC | 1 cut(s) | 577 |
| Fnu4HI | GCNGC | 1 cut(s) | 498 |
| FokI | GGATG | 1 cut(s) | 565 |
| Fsp4HI | GCNGC | 1 cut(s) | 498 |
| GlaI | GCGC | 1 cut(s) | 357 |
| GluI | GCNGC | 1 cut(s) | 498 |
| HapII | CCGG | 1 cut(s) | 275 |
| HgaI | GACGC | 1 cut(s) | 176 |
| HhaI | GCGC | 1 cut(s) | 358 |
| Hin6I | GCGC | 1 cut(s) | 356 |
| HinP1I | GCGC | 1 cut(s) | 356 |
| HincII | GTYRAC | 2 cut(s) | 8, 262 |
| HindII | GTYRAC | 2 cut(s) | 8, 262 |
| HinfI | GANTC | 5 cut(s) | 4, 29, 416, 431, 556 |
| HpaII | CCGG | 1 cut(s) | 275 |
| Hpy166II | GTNNAC | 3 cut(s) | 8, 262, 515 |
| Hpy188I | TCNGA | 5 cut(s) | 14, 34, 194, 271, 421 |
| Hpy188III | TCNNGA | 2 cut(s) | 540, 602 |
| Hpy8I | GTNNAC | 3 cut(s) | 8, 262, 515 |
| Hpy99I | CGWCG | 6 cut(s) | 218, 221, 236, 439, 442, 445 |
| HpyCH4III | ACNGT | 4 cut(s) | 98, 396, 425, 584 |
| HpyCH4IV | ACGT | 7 cut(s) | 128, 307, 360, 443, 521, 566, 597 |
| HpyCH4V | TGCA | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 143, 191 |
| HpySE526I | ACGT | 7 cut(s) | 128, 307, 360, 443, 521, 566, 597 |
| HspAI | GCGC | 1 cut(s) | 356 |
| Kzo9I | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| LpnPI | CCDG | 4 cut(s) | 239, 266, 288, 523 |
| MabI | ACCWGGT | 1 cut(s) | 252 |
| MaeII | ACGT | 7 cut(s) | 128, 307, 360, 443, 521, 566, 597 |
| MaeIII | GTNAC | 3 cut(s) | 361, 382, 578 |
| MalI | GATC | 5 cut(s) | 87, 273, 459, 590, 606 |
| MboI | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| MboII | GAAGA | 6 cut(s) | 47, 92, 95, 248, 251, 495 |
| MflI | RGATCY | 1 cut(s) | 271 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 273 |
| MnlI | CCTC | 9 cut(s) | 48, 186, 312, 325, 337, 361, 364, 396, 582 |
| MseI | TTAA | 1 cut(s) | 131 |
| MspA1I | CMGCKG | 1 cut(s) | 463 |
| MspI | CCGG | 1 cut(s) | 275 |
| MspR9I | CCNGG | 2 cut(s) | 254, 276 |
| MvaI | CCWGG | 1 cut(s) | 254 |
| NciI | CCSGG | 1 cut(s) | 276 |
| NdeII | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 323 |
| NmuCI | GTSAC | 1 cut(s) | 361 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 440 |
| PfeI | GAWTC | 4 cut(s) | 29, 416, 431, 556 |
| PkrI | GCNGC | 1 cut(s) | 499 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PmaCI | CACGTG | 2 cut(s) | 308, 361 |
| PmlI | CACGTG | 2 cut(s) | 308, 361 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| Ppu21I | YACGTR | 3 cut(s) | 308, 361, 522 |
| Psp6I | CCWGG | 1 cut(s) | 252 |
| PspCI | CACGTG | 2 cut(s) | 308, 361 |
| PspGI | CCWGG | 1 cut(s) | 252 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 323 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 520, 552 |
| PsuI | RGATCY | 1 cut(s) | 271 |
| RsaI | GTAC | 3 cut(s) | 280, 286, 393 |
| RsaNI | GTAC | 3 cut(s) | 279, 285, 392 |
| SaqAI | TTAA | 1 cut(s) | 131 |
| SatI | GCNGC | 1 cut(s) | 498 |
| Sau3AI | GATC | 5 cut(s) | 85, 271, 457, 588, 604 |
| SchI | GAGTC | 1 cut(s) | 13 |
| ScrFI | CCNGG | 2 cut(s) | 254, 276 |
| SexAI | ACCWGGT | 1 cut(s) | 252 |
| SnaBI | TACGTA | 1 cut(s) | 522 |
| SsiI | CCGC | 5 cut(s) | 200, 341, 413, 461, 497 |
| StyD4I | CCNGG | 2 cut(s) | 252, 274 |
| TaaI | ACNGT | 4 cut(s) | 98, 396, 425, 584 |
| TaiI | ACGT | 7 cut(s) | 131, 310, 363, 446, 524, 569, 600 |
| TaqI | TCGA | 4 cut(s) | 78, 219, 434, 587 |
| TauI | GCSGC | 1 cut(s) | 500 |
| TfiI | GAWTC | 4 cut(s) | 29, 416, 431, 556 |
| Tru1I | TTAA | 1 cut(s) | 131 |
| Tru9I | TTAA | 1 cut(s) | 131 |
| TseFI | GTSAC | 1 cut(s) | 361 |
| Tsp45I | GTSAC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 1 cut(s) | 569 |
| TspGWI | ACGGA | 2 cut(s) | 302, 380 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 329 |