Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Reverse (-)

22374760 .. 22376037

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATCCACATACCAGAGAGACCGCCAGTGAAGCGACCAGATTCTGACCAGGTCCCTACCATGGAGCAACTGGAGCATACCAGATTCTTTCTCAATCTCGCCGTTAATTTCAATAATCTTGAGAAGCCATCGCCACCACCAAGATCTCTCTCACTATCGCCACCGGTCTCGGGATCTCTCTCACTATCGCTGCAGGTTTCAGTGCCAAGGAAGATAAAGAGCCTCCTTCTTCTATTGGAGATGCCTCCGATAAGTCTGGTGTTGCAGGAAGCGGTCCGGAGAGGAAGGGAGGCCAAGATGATTCTCGAGGTTCTGAGGGAGCAAATGGACGATGGCGATGCAGCCAAGGCAGGGAGGAGGAGTTTCAAGCAGCGGCTGAGATTGACCGGAATCGGGTGCTGCGGCGCCGCCTGGGTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

140

Amino Acids

15.67

Weight (kDa)

10.12

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	276
AciI	CCGC	5 cut(s)	23, 272, 373, 402, 408
AclWI	GGATC	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	5 cut(s)	61, 170, 351, 393, 417
AgeI	ACCGGT	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	112, 367
AjnI	CCWGG	2 cut(s)	48, 410
Alw26I	GTCTC	2 cut(s)	13, 172
AlwI	GGATC	1 cut(s)	181
AlwNI	CAGNNNCTG	2 cut(s)	44, 376
Ama87I	CYCGRG	2 cut(s)	169, 305
Aor13HI	TCCGGA	1 cut(s)	276
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	4 cut(s)	190, 341, 370, 399
AsiGI	ACCGGT	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	52, 274
AvaI	CYCGRG	2 cut(s)	169, 305
AvaII	GGWCC	2 cut(s)	52, 274
BanI	GGYRCC	1 cut(s)	404
BbvI	GCAGC	4 cut(s)	177, 353, 382, 386
BccI	CCATC	2 cut(s)	136, 326
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	2 cut(s)	50, 412
BcoDI	GTCTC	2 cut(s)	13, 172
BfmI	CTRYAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	7 cut(s)	191, 342, 371, 374, 400, 403, 408
BlsI	GCNGC	7 cut(s)	192, 343, 372, 375, 401, 404, 409
Bme1390I	CCNGG	2 cut(s)	50, 412
Bme18I	GGWCC	2 cut(s)	52, 274
BmeT110I	CYCGRG	2 cut(s)	169, 305
BmgT120I	GGNCC	2 cut(s)	52, 274
BmiI	GGNNCC	2 cut(s)	54, 406
BmrFI	CCNGG	2 cut(s)	50, 412
BmsI	GCATC	2 cut(s)	231, 328
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	2 cut(s)	13, 172
BsaJI	CCNNGG	4 cut(s)	60, 206, 345, 411
BsaWI	WCCGGW	3 cut(s)	163, 276, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 170, 351, 393, 417
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	26, 75
BseAI	TCCGGA	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	50, 412
BseDI	CCNNGG	4 cut(s)	60, 206, 345, 411
BseLI	CCNNNNNNNGG	5 cut(s)	61, 170, 351, 393, 417
BseMII	CTCAG	2 cut(s)	305, 368
BseNI	ACTGG	2 cut(s)	26, 75
BseRI	GAGGAG	2 cut(s)	370, 373
BseXI	GCAGC	4 cut(s)	177, 353, 382, 386
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	163
BsiHKCI	CYCGRG	2 cut(s)	169, 305
BsiSI	CCGG	3 cut(s)	164, 277, 387
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	5 cut(s)	61, 170, 351, 393, 417
BsmAI	GTCTC	2 cut(s)	13, 172
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	2 cut(s)	13, 172
BsoBI	CYCGRG	2 cut(s)	169, 305
Bsp13I	TCCGGA	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	3, 143, 173
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	5 cut(s)	23, 272, 373, 402, 408
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	306, 369
BspEI	TCCGGA	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	54, 406
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	13, 172
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	26, 75
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	60, 206, 345, 411
BssMI	GATC	3 cut(s)	3, 143, 173
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	3 cut(s)	60, 206, 345
Bst2UI	CCWGG	2 cut(s)	50, 412
BstACI	GRCGYC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	314, 377
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	3 cut(s)	6, 146, 176
BstMAI	GTCTC	2 cut(s)	13, 172
BstMBI	GATC	3 cut(s)	3, 143, 173
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 73, 347
BstNI	CCWGG	2 cut(s)	50, 412
BstSCI	CCNGG	2 cut(s)	48, 410
BstSFI	CTRYAG	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	177, 353, 382, 386
BstX2I	RGATCY	2 cut(s)	143, 173
BstYI	RGATCY	2 cut(s)	143, 173
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	2 cut(s)	114, 351
BtsIMutI	CAGTG	2 cut(s)	33, 207
BveI	ACCTGC	1 cut(s)	184
CaiI	CAGNNNCTG	2 cut(s)	44, 376
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	52, 274
CpoI	CGGWCCG	1 cut(s)	274
CsiI	ACCWGGT	1 cut(s)	48
CspAI	ACCGGT	1 cut(s)	163
CspI	CGGWCCG	1 cut(s)	274
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	127, 222, 293, 344, 376
CviKI_1	RGCY	5 cut(s)	127, 222, 293, 344, 376
DdeI	CTNAG	2 cut(s)	314, 377
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	3 cut(s)	5, 145, 175
DpnII	GATC	3 cut(s)	3, 143, 173
Eco130I	CCWWGG	3 cut(s)	60, 206, 345
Eco31I	GGTCTC	2 cut(s)	13, 172
Eco47I	GGWCC	2 cut(s)	52, 274
Eco88I	CYCGRG	2 cut(s)	169, 305
EcoNI	CCTNNNNNAGG	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	48, 410
EcoT14I	CCWWGG	3 cut(s)	60, 206, 345
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	3 cut(s)	60, 206, 345
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	11, 62, 78
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	7 cut(s)	191, 342, 371, 374, 400, 403, 408
Fsp4HI	GCNGC	7 cut(s)	191, 342, 371, 374, 400, 403, 408
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	7 cut(s)	191, 342, 371, 374, 400, 403, 408
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	3 cut(s)	164, 277, 387
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	4 cut(s)	41, 84, 301, 390
HpaII	CCGG	3 cut(s)	164, 277, 387
Hpy188I	TCNGA	3 cut(s)	46, 249, 315
Hpy188III	TCNNGA	4 cut(s)	119, 171, 277, 305
HpyAV	CCTTC	2 cut(s)	236, 279
HpyCH4V	TGCA	3 cut(s)	193, 265, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 73, 347
HpyF3I	CTNAG	2 cut(s)	314, 377
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
Kpn2I	TCCGGA	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	3, 143, 173
LmnI	GCTCC	3 cut(s)	64, 73, 319
Lsp1109I	GCAGC	4 cut(s)	177, 353, 382, 386
LweI	GCATC	2 cut(s)	231, 328
MabI	ACCWGGT	1 cut(s)	48
MalI	GATC	3 cut(s)	5, 145, 175
MboI	GATC	3 cut(s)	3, 143, 173
MboII	GAAGA	2 cut(s)	221, 223
MflI	RGATCY	2 cut(s)	143, 173
MluCI	AATT	1 cut(s)	106
Mly113I	GGCGCC	1 cut(s)	405
MnlI	CCTC	8 cut(s)	233, 255, 275, 283, 301, 309, 348, 351
MroI	TCCGGA	1 cut(s)	276
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	3 cut(s)	164, 277, 387
MspR9I	CCNGG	2 cut(s)	50, 412
MvaI	CCWGG	2 cut(s)	50, 412
MwoI	GCNNNNNNNGC	3 cut(s)	31, 73, 347
NarI	GGCGCC	1 cut(s)	405
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	3, 143, 173
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	54, 406
PaeR7I	CTCGAG	1 cut(s)	305
PfeI	GAWTC	4 cut(s)	41, 84, 301, 390
PflFI	GACNNNGTC	1 cut(s)	50
PinAI	ACCGGT	1 cut(s)	163
PkrI	GCNGC	7 cut(s)	192, 343, 372, 375, 401, 404, 409
PluTI	GGCGCC	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	48, 410
PspGI	CCWGG	2 cut(s)	48, 410
PspN4I	GGNNCC	2 cut(s)	54, 406
PspPI	GGNCC	2 cut(s)	52, 274
PspPPI	RGGWCCY	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	2 cut(s)	44, 376
PsuI	RGATCY	2 cut(s)	143, 173
PsyI	GACNNNGTC	1 cut(s)	50
Rsr2I	CGGWCCG	1 cut(s)	274
RsrII	CGGWCCG	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	7 cut(s)	191, 342, 371, 374, 400, 403, 408
Sau3AI	GATC	3 cut(s)	3, 143, 173
Sau96I	GGNCC	2 cut(s)	52, 274
ScrFI	CCNGG	2 cut(s)	50, 412
SetI	ASST	4 cut(s)	54, 198, 312, 422
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	2 cut(s)	231, 328
SfcI	CTRYAG	1 cut(s)	191
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	52, 274
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	119, 305
SmoI	CTYRAG	2 cut(s)	119, 305
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	5 cut(s)	23, 272, 373, 402, 408
SspDI	GGCGCC	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	48, 410
StyI	CCWWGG	3 cut(s)	60, 206, 345
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	106
TauI	GCSGC	3 cut(s)	376, 405, 410
TfiI	GAWTC	4 cut(s)	41, 84, 301, 390
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	33, 207
TseI	GCWGC	4 cut(s)	190, 341, 370, 399
TspRI	CASTG	2 cut(s)	33, 207
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	52, 274
XagI	CCTNNNNNAGG	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.