Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Reverse (-)

85380895 .. 85386790

Gene Structure 5896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG553000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGTCAACTCAGTCTGGTGTTGCAGGAAACGGTCTGGAGAGGAAGGGAGGCCAGGACGATTCTCGAGGTTCTGAGGGAGCAAATGGACGACGGCGACGCGACCACGGGAGGGAGGAGGAGTTTCAAGCAGCGGCTGAGATTGACCGGAATCGGGTGCTGTGGCGCCGGCTGGGGATTTGGACGGACGACCACGATTACCGTCGAGGACGATGAAGAACAACACATACATCCACCGCAACAACAACCGCGGCAACAGTTGCCGAATCTATCGCAATTGCTGGGGCAGGCCGCCGGAGAATCTCCATATGGAGGAGATGGTATTACCGGACAACTTGGACCTTGTACGTATATGACCATGGTCCGTTTAACTATTTTGAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

128

Amino Acids

14.11

Weight (kDa)

5.63

Isoelectric Point (pI)

67.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	2 cut(s)	101, 250
AciI	CCGC	5 cut(s)	133, 236, 248, 250, 291
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	3 cut(s)	111, 153, 311
AgsI	TTSAA	2 cut(s)	127, 379
AjnI	CCWGG	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	51, 288
ApeKI	GCWGC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	338, 361
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	338, 361
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	55
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	4 cut(s)	131, 134, 251, 291
BlsI	GCNGC	4 cut(s)	132, 135, 252, 292
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	338, 361
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	338, 361
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	105, 248, 357
BsaWI	WCCGGW	2 cut(s)	146, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 153, 311
Bse118I	RCCGGY	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	3 cut(s)	105, 248, 357
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	111, 153, 311
BseMII	CTCAG	3 cut(s)	25, 65, 128
BseRI	GAGGAG	3 cut(s)	130, 133, 327
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	2 cut(s)	171, 280
Bsh1236I	CGCG	2 cut(s)	101, 250
BshFI	GGCC	2 cut(s)	53, 290
BshNI	GGYRCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	147, 168, 294, 327
BslI	CCNNNNNNNGG	3 cut(s)	111, 153, 311
BsnI	GGCC	2 cut(s)	53, 290
BsoBI	CYCGRG	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	5 cut(s)	133, 236, 248, 250, 291
BspANI	GGCC	2 cut(s)	53, 290
BspCNI	CTCAG	3 cut(s)	24, 66, 129
BspFNI	CGCG	2 cut(s)	101, 250
BspLI	GGNNCC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	105, 248, 357
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	34, 202, 258
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	169, 288
BstDEI	CTNAG	3 cut(s)	11, 74, 137
BstDSI	CCRYGG	3 cut(s)	105, 248, 357
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	101, 250
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	55
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	348
BstUI	CGCG	2 cut(s)	101, 250
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	53, 290
BtgI	CCRYGG	3 cut(s)	105, 248, 357
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	169, 288
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	338, 361
Cfr42I	CCGCGG	1 cut(s)	251
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	4 cut(s)	53, 136, 171, 290
CviKI_1	RGCY	4 cut(s)	53, 136, 171, 290
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	3 cut(s)	11, 74, 137
DinI	GGCGCC	1 cut(s)	166
Eco105I	TACGTA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	338, 361
Eco88I	CYCGRG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	357
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	361
FaiI	YATR	6 cut(s)	227, 307, 309, 351, 353, 359
FatI	CATG	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	4 cut(s)	131, 134, 251, 291
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	131, 134, 251, 291
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	131, 134, 251, 291
GsaI	CCCAGC	2 cut(s)	175, 284
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	53, 290
HapII	CCGG	4 cut(s)	147, 168, 294, 327
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	5 cut(s)	4, 61, 150, 265, 299
HpaII	CCGG	4 cut(s)	147, 168, 294, 327
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	37, 65
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	3 cut(s)	95, 101, 206
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	3 cut(s)	34, 202, 258
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	3 cut(s)	11, 74, 137
HpySE526I	ACGT	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	347
MboII	GAAGA	1 cut(s)	227
MfeI	CAATTG	1 cut(s)	275
MluCI	AATT	1 cut(s)	275
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	35, 43, 61, 69, 104, 108, 111, 199, 305
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	133, 250
MspI	CCGG	4 cut(s)	147, 168, 294, 327
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	2 cut(s)	101, 250
MwoI	GCNNNNNNNGC	1 cut(s)	259
NaeI	GCCGGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	307
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	4 cut(s)	61, 150, 265, 299
PkrI	GCNGC	4 cut(s)	132, 135, 252, 292
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	53
PspFI	CCCAGC	2 cut(s)	171, 280
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	338, 361
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SacII	CCGCGG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	4 cut(s)	131, 134, 251, 291
Sau96I	GGNCC	2 cut(s)	338, 361
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	3 cut(s)	72, 343, 350
SfoI	GGCGCC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	65
Sfr303I	CCGCGG	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	338, 361
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SnaBI	TACGTA	1 cut(s)	348
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	5 cut(s)	133, 236, 248, 250, 291
SspDI	GGCGCC	1 cut(s)	164
SspI	AATATT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	34, 202, 258
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	66, 204
TasI	AATT	1 cut(s)	275
TauI	GCSGC	3 cut(s)	136, 253, 293
TfiI	GAWTC	4 cut(s)	61, 150, 265, 299
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	2 cut(s)	199, 353
VpaK11BI	GGWCC	2 cut(s)	338, 361
XhoI	CTCGAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.