Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Forward (+)

12570594 .. 12571417

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTCAATTCAGTCTGGTGTTGCAGGAAACGGTCCGGAGAGGAAGGGAGGCCAGGATGATTCTCGAGGTTCTGAGGGAGCAAATGGACGATGGCGATGCAGCCAAGGCAGGGAGGAGGAGTTTCAAGCAGCGGCTGAGATTGACCGGAATCGGGTGCTGCAGCGCTGCCTGGGTTAGGCACAAATGTCCTGCCTGTTACAAGCAATATAAGAAGAAAGAACATCTCATTGAGCACAAGAAGGTTGCTTTCCACTCAGCTCATGATCCTATTTGTGGAGTGTGCAGAAAGCCTTGCAAATCTTTTGAGTCATTGAGGGCGCATCTTACTGGTGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022607 GO:0022613 GO:0022618 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

113

Amino Acids

12.99

Weight (kDa)

9.67

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	4 cut(s)	111, 153, 177, 275
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	53, 170
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	65
Aor13HI	TCCGGA	1 cut(s)	36
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	5 cut(s)	101, 130, 159, 162, 167
AspLEI	GCGC	2 cut(s)	167, 322
AspS9I	GGNCC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	113, 142, 146, 154, 174
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	2 cut(s)	55, 172
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
BlsI	GCNGC	6 cut(s)	103, 132, 135, 161, 164, 169
Bme1390I	CCNGG	2 cut(s)	55, 172
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	55, 172
BmsI	GCATC	2 cut(s)	88, 331
BsaJI	CCNNGG	2 cut(s)	105, 171
BsaWI	WCCGGW	2 cut(s)	36, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 153, 177, 275
Bse1I	ACTGG	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	55, 172
BseDI	CCNNGG	2 cut(s)	105, 171
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	4 cut(s)	111, 153, 177, 275
BseMII	CTCAG	3 cut(s)	65, 128, 270
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	2 cut(s)	130, 133
BseXI	GCAGC	5 cut(s)	113, 142, 146, 154, 174
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	37, 147
BslI	CCNNNNNNNGG	4 cut(s)	111, 153, 177, 275
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	66, 129, 269
BspEI	TCCGGA	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	164
BspPI	GGATC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	105, 171
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	55, 172
Bst4CI	ACNGT	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	74, 137, 256
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 322
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	2 cut(s)	55, 172
BstSCI	CCNGG	2 cut(s)	53, 170
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	113, 142, 146, 154, 174
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	2 cut(s)	167, 322
Cfr13I	GGNCC	1 cut(s)	34
CpoI	CGGWCCG	1 cut(s)	34
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	5 cut(s)	53, 104, 136, 260, 292
CviKI_1	RGCY	5 cut(s)	53, 104, 136, 260, 292
DdeI	CTNAG	3 cut(s)	74, 137, 256
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	34
Eco47III	AGCGCT	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	53, 170
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	266
FaiI	YATR	2 cut(s)	210, 264
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
GlaI	GCGC	2 cut(s)	166, 321
GluI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	37, 147
HhaI	GCGC	2 cut(s)	167, 322
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	2 cut(s)	165, 320
HinP1I	GCGC	2 cut(s)	165, 320
HinfI	GANTC	4 cut(s)	4, 61, 150, 308
HpaII	CCGG	2 cut(s)	37, 147
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	3 cut(s)	37, 65, 263
HpyAV	CCTTC	2 cut(s)	39, 235
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	25, 101, 162, 285, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	74, 137, 256
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	2 cut(s)	165, 320
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	5 cut(s)	113, 142, 146, 154, 174
LweI	GCATC	2 cut(s)	88, 331
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	13, 317
MnlI	CCTC	7 cut(s)	35, 43, 61, 69, 108, 111, 309
MroI	TCCGGA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	2 cut(s)	37, 147
MspR9I	CCNGG	2 cut(s)	55, 172
MvaI	CCWGG	2 cut(s)	55, 172
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	61, 150
PkrI	GCNGC	6 cut(s)	103, 132, 135, 161, 164, 169
PleI	GAGTC	2 cut(s)	12, 316
PpsI	GAGTC	2 cut(s)	12, 316
Psp6I	CCWGG	2 cut(s)	53, 170
PspGI	CCWGG	2 cut(s)	53, 170
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	136
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SatI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	13, 317
ScrFI	CCNGG	2 cut(s)	55, 172
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	3 cut(s)	72, 246, 262
SfaNI	GCATC	2 cut(s)	88, 331
SfcI	CTRYAG	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	53, 170
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	8
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	61, 150
TseI	GCWGC	5 cut(s)	101, 130, 159, 162, 167
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.