Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Reverse (-)

36334304 .. 36337607

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGTCAACTCAGTCTGGTGTTGCAGGAAGCGATCCGGAGAGGAAGGGAGGCCAAGATGATTCTTGAGGTTCTGAGGGAGCAAATGGACGATGGCGATGCAGCCAAGGCAGGGAGGAGGAGTTTCAAGCAGCGGCTGAGATTGACCGGAATCGGGTGCTGCGGCGCCGCCTGGGTTAGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAATTTGAGAATGGAATCCTTGTGGAATCCAACAATGCCAGTGGCATCACATTCCTCATGCTTGCACTAACTTGCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

99

Amino Acids

10.87

Weight (kDa)

9.3

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	3 cut(s)	133, 162, 168
AclWI	GGATC	2 cut(s)	28, 188
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	111, 153
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	170
AlwI	GGATC	2 cut(s)	28, 188
AlwNI	CAGNNNCTG	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	101, 130, 159
AspLEI	GCGC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	113, 142, 146
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	168
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
BlsI	GCNGC	6 cut(s)	103, 132, 135, 161, 164, 169
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	88, 270
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	105, 171
BsaWI	WCCGGW	2 cut(s)	36, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 153
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	105, 171
BseLI	CCNNNNNNNGG	2 cut(s)	111, 153
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	25, 65, 128
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	130, 133
BseXI	GCAGC	3 cut(s)	113, 142, 146
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	37, 147
BslI	CCNNNNNNNGG	2 cut(s)	111, 153
BsnI	GGCC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	33, 193, 210
BspACI	CCGC	3 cut(s)	133, 162, 168
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	24, 66, 129
BspEI	TCCGGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	2 cut(s)	28, 188
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	105, 171
BssMI	GATC	3 cut(s)	33, 193, 210
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	11, 74, 137
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	36, 196, 213
BstMBI	GATC	3 cut(s)	33, 193, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	113, 142, 146
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	167
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	3 cut(s)	53, 104, 136
CviKI_1	RGCY	3 cut(s)	53, 104, 136
DdeI	CTNAG	3 cut(s)	11, 74, 137
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	3 cut(s)	35, 195, 212
DpnII	GATC	3 cut(s)	33, 193, 210
Eco130I	CCWWGG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	105
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	277
FaiI	YATR	1 cut(s)	275
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
Fsp4HI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	37, 147
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	5 cut(s)	4, 61, 150, 231, 242
HpaII	CCGG	2 cut(s)	37, 147
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	37, 65
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	25, 101, 217, 281, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	11, 74, 137
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	33, 193, 210
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	2, 11, 50, 96, 157, 160, 184, 268
Lsp1109I	GCAGC	3 cut(s)	113, 142, 146
LweI	GCATC	2 cut(s)	88, 270
MalI	GATC	3 cut(s)	35, 195, 212
MboI	GATC	3 cut(s)	33, 193, 210
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	1 cut(s)	218
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	35, 43, 61, 69, 108, 111, 281
MroI	TCCGGA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	2 cut(s)	37, 147
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	107
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	3 cut(s)	33, 193, 210
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	61, 150, 231, 242
PkrI	GCNGC	6 cut(s)	103, 132, 135, 161, 164, 169
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	210
SatI	GCNGC	6 cut(s)	102, 131, 134, 160, 163, 168
Sau3AI	GATC	3 cut(s)	33, 193, 210
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	1 cut(s)	72
SfaNI	GCATC	2 cut(s)	88, 270
SfoI	GGCGCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	3 cut(s)	133, 162, 168
SspDI	GGCGCC	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	105
TasI	AATT	1 cut(s)	218
TauI	GCSGC	3 cut(s)	136, 165, 170
TfiI	GAWTC	4 cut(s)	61, 150, 231, 242
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	3 cut(s)	101, 130, 159
TspRI	CASTG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.