Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000378.1

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Reverse (-)

1105 .. 1877

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgagtcaactcagtctggtgttgcaggaaacggtccggagaggaagggaggccaggacgatcctcgaggttctgagagagcaaatggacgacggcgatgcggcgacggccgggaggaggagcttcaagcagcggctgagattgaccggaatcgggtgctgcggcgccgtctggggatttggacggacggccacgattaccgtcgaggacgacgaagaacaacacctacatccgccgcaacaacaaccgcggcagcagctgccgaacctatcgcagctgctgattctggggcaggcggccgggtccgattcggatccgggttgcctgggtccggtcaaccccgggtcggggatgaacctcgccgcggctctggcggcggaacggcattatcgggaggcggacgaggccgcgtcgggcggtggggaggcgccggggacgccggtgagggtgtcgctgatgagattgctggaggagacggaaatggacgggtgcgatgcggcggaggagaaaaatgagaaagcggcggcggcggcgacgggggtggtgggttgtgattcgggtgtgttcgagggaggtgtggctgaatcgaggctcctgtcccctctgcaaccgtacgatcctcgagattctcgatatcttctgacgagcatggagattcgcgccgccgtggaattcagggacgacgatgacggggactgttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

234

Amino Acids

25.03

Weight (kDa)

4.58

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	65
AccB1I	GGYRCC	2 cut(s)	164, 427
AccII	CGCG	4 cut(s)	250, 365, 410, 660
AccIII	TCCGGA	1 cut(s)	36
AclWI	GGATC	4 cut(s)	55, 308, 321, 611
AcoI	YGGCCR	3 cut(s)	108, 189, 297
AcsI	RAATTY	1 cut(s)	671
AcyI	GRCGYC	3 cut(s)	165, 428, 437
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	7 cut(s)	117, 153, 331, 346, 347, 348, 364
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	53, 324
AluBI	AGCT	3 cut(s)	123, 259, 277
AluI	AGCT	3 cut(s)	123, 259, 277
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	4 cut(s)	55, 308, 321, 611
AlwNI	CAGNNNCTG	3 cut(s)	136, 259, 280
Ama87I	CYCGRG	3 cut(s)	65, 341, 621
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	5 cut(s)	51, 108, 189, 297, 405
ApeKI	GCWGC	7 cut(s)	130, 159, 253, 256, 259, 274, 277
ApoI	RAATTY	1 cut(s)	671
AspLEI	GCGC	3 cut(s)	167, 430, 662
AspS9I	GGNCC	3 cut(s)	34, 303, 329
AsuC2I	CCSGG	6 cut(s)	112, 301, 318, 342, 343, 432
AsuHPI	GGTGA	1 cut(s)	454
AvaI	CYCGRG	3 cut(s)	65, 341, 621
AvaII	GGWCC	3 cut(s)	34, 303, 329
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	164, 427
BbvI	GCAGC	7 cut(s)	142, 146, 246, 264, 265, 268, 286
BceAI	ACGGC	6 cut(s)	109, 123, 152, 204, 398, 650
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	2 cut(s)	55, 326
BcnI	CCSGG	6 cut(s)	112, 301, 318, 342, 343, 432
BcoDI	GTCTC	1 cut(s)	467
BfoI	RGCGCY	2 cut(s)	168, 431
Bme1390I	CCNGG	8 cut(s)	55, 112, 301, 318, 326, 342, 343, 432
Bme18I	GGWCC	3 cut(s)	34, 303, 329
BmeT110I	CYCGRG	3 cut(s)	65, 341, 621
BmgT120I	GGNCC	3 cut(s)	34, 303, 329
BmiI	GGNNCC	6 cut(s)	166, 304, 315, 330, 429, 593
BmrFI	CCNGG	8 cut(s)	55, 112, 301, 318, 326, 342, 343, 432
BmsI	GCATC	2 cut(s)	88, 484
BpmI	CTGGAG	1 cut(s)	488
BpuMI	CCSGG	6 cut(s)	112, 301, 318, 342, 343, 432
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	3 cut(s)	165, 428, 437
BsaJI	CCNNGG	7 cut(s)	248, 325, 340, 341, 363, 431, 666
BsaWI	WCCGGW	3 cut(s)	36, 146, 331
Bsc4I	CCNNNNNNNGG	7 cut(s)	117, 153, 331, 346, 347, 348, 364
Bse118I	RCCGGY	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	55, 326
BseDI	CCNNGG	7 cut(s)	248, 325, 340, 341, 363, 431, 666
BseGI	GGATG	2 cut(s)	229, 357
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	7 cut(s)	117, 153, 331, 346, 347, 348, 364
BseMII	CTCAG	3 cut(s)	25, 65, 128
BseRI	GAGGAG	4 cut(s)	130, 133, 485, 518
BseX3I	CGGCCG	2 cut(s)	108, 297
BseXI	GCAGC	7 cut(s)	142, 146, 246, 264, 265, 268, 286
Bsh1236I	CGCG	4 cut(s)	250, 365, 410, 660
Bsh1285I	CGRYCG	2 cut(s)	111, 300
BshFI	GGCC	5 cut(s)	53, 110, 191, 299, 407
BshNI	GGYRCC	2 cut(s)	164, 427
BsiEI	CGRYCG	2 cut(s)	111, 300
BsiHKCI	CYCGRG	3 cut(s)	65, 341, 621
BsiSI	CCGG	9 cut(s)	37, 111, 147, 300, 317, 332, 342, 431, 440
BsiWI	CGTACG	1 cut(s)	612
BslFI	GGGAC	3 cut(s)	448, 583, 692
BslI	CCNNNNNNNGG	7 cut(s)	117, 153, 331, 346, 347, 348, 364
BsmAI	GTCTC	1 cut(s)	467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	3 cut(s)	448, 583, 692
BsnI	GGCC	5 cut(s)	53, 110, 191, 299, 407
BsoBI	CYCGRG	3 cut(s)	65, 341, 621
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	60, 313, 616
BspANI	GGCC	5 cut(s)	53, 110, 191, 299, 407
BspCNI	CTCAG	3 cut(s)	24, 66, 129
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	4 cut(s)	250, 365, 410, 660
BspLI	GGNNCC	6 cut(s)	166, 304, 315, 330, 429, 593
BspPI	GGATC	4 cut(s)	55, 308, 321, 611
BspT107I	GGYRCC	2 cut(s)	164, 427
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	7 cut(s)	248, 325, 340, 341, 363, 431, 666
BssMI	GATC	3 cut(s)	60, 313, 616
BssNI	GRCGYC	3 cut(s)	165, 428, 437
Bst2UI	CCWGG	2 cut(s)	55, 326
Bst4CI	ACNGT	4 cut(s)	34, 202, 612, 698
BstACI	GRCGYC	3 cut(s)	165, 428, 437
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	11, 74, 137
BstDSI	CCRYGG	3 cut(s)	248, 363, 666
BstF5I	GGATG	2 cut(s)	229, 357
BstFNI	CGCG	4 cut(s)	250, 365, 410, 660
BstH2I	RGCGCY	2 cut(s)	168, 431
BstHHI	GCGC	3 cut(s)	167, 430, 662
BstKTI	GATC	3 cut(s)	63, 316, 619
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	3 cut(s)	60, 313, 616
BstMCI	CGRYCG	2 cut(s)	111, 300
BstMWI	GCNNNNNNNGC	9 cut(s)	107, 256, 259, 371, 374, 404, 436, 527, 530
BstNI	CCWGG	2 cut(s)	55, 326
BstSCI	CCNGG	8 cut(s)	53, 110, 299, 316, 324, 340, 341, 430
BstUI	CGCG	4 cut(s)	250, 365, 410, 660
BstV1I	GCAGC	7 cut(s)	142, 146, 246, 264, 265, 268, 286
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BstZI	CGGCCG	2 cut(s)	108, 297
BsuRI	GGCC	5 cut(s)	53, 110, 191, 299, 407
BtgI	CCRYGG	3 cut(s)	248, 363, 666
BtgZI	GCGATG	2 cut(s)	111, 507
BtsCI	GGATG	2 cut(s)	229, 357
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	3 cut(s)	136, 259, 280
CfoI	GCGC	3 cut(s)	167, 430, 662
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	34, 303, 329
Cfr42I	CCGCGG	2 cut(s)	251, 366
Cfr9I	CCCGGG	1 cut(s)	341
CpoI	CGGWCCG	1 cut(s)	34
CseI	GACGC	2 cut(s)	399, 445
Csp6I	GTAC	1 cut(s)	613
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	3 cut(s)	11, 74, 137
DinI	GGCGCC	2 cut(s)	166, 429
DpnI	GATC	3 cut(s)	62, 315, 618
DpnII	GATC	3 cut(s)	60, 313, 616
EaeI	YGGCCR	3 cut(s)	108, 189, 297
EagI	CGGCCG	2 cut(s)	108, 297
EciI	GGCGGA	4 cut(s)	222, 392, 413, 515
EclXI	CGGCCG	2 cut(s)	108, 297
Eco32I	GATATC	1 cut(s)	635
Eco47I	GGWCC	3 cut(s)	34, 303, 329
Eco52I	CGGCCG	2 cut(s)	108, 297
Eco88I	CYCGRG	3 cut(s)	65, 341, 621
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	53, 324
EcoRV	GATATC	1 cut(s)	635
EgeI	GGCGCC	2 cut(s)	166, 429
EheI	GGCGCC	2 cut(s)	166, 429
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	1 cut(s)	652
FaiI	YATR	1 cut(s)	650
FaqI	GGGAC	3 cut(s)	448, 583, 692
FatI	CATG	1 cut(s)	648
FokI	GGATG	2 cut(s)	216, 364
GlaI	GCGC	3 cut(s)	166, 429, 661
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	2 cut(s)	168, 431
HaeIII	GGCC	5 cut(s)	53, 110, 191, 299, 407
HapII	CCGG	9 cut(s)	37, 111, 147, 300, 317, 332, 342, 431, 440
HgaI	GACGC	2 cut(s)	399, 445
HhaI	GCGC	3 cut(s)	167, 430, 662
Hin1I	GRCGYC	3 cut(s)	165, 428, 437
Hin1II	CATG	1 cut(s)	652
Hin6I	GCGC	3 cut(s)	165, 428, 660
HinP1I	GCGC	3 cut(s)	165, 428, 660
HincII	GTYRAC	2 cut(s)	8, 337
HindII	GTYRAC	2 cut(s)	8, 337
HinfI	GANTC	8 cut(s)	4, 150, 283, 308, 554, 584, 626, 655
HpaII	CCGG	9 cut(s)	37, 111, 147, 300, 317, 332, 342, 431, 440
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	2 cut(s)	8, 337
Hpy188I	TCNGA	4 cut(s)	75, 307, 313, 642
Hpy188III	TCNNGA	4 cut(s)	37, 392, 623, 630
Hpy8I	GTNNAC	2 cut(s)	8, 337
Hpy99I	CGWCG	7 cut(s)	95, 109, 206, 215, 415, 538, 686
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	4 cut(s)	34, 202, 612, 698
HpyCH4V	TGCA	2 cut(s)	25, 607
HpyF10VI	GCNNNNNNNGC	9 cut(s)	107, 256, 259, 371, 374, 404, 436, 527, 530
HpyF3I	CTNAG	3 cut(s)	11, 74, 137
Hsp92I	GRCGYC	3 cut(s)	165, 428, 437
Hsp92II	CATG	1 cut(s)	652
HspAI	GCGC	3 cut(s)	165, 428, 660
KasI	GGCGCC	2 cut(s)	164, 427
Kpn2I	TCCGGA	1 cut(s)	36
KspI	CCGCGG	2 cut(s)	251, 366
Kzo9I	GATC	3 cut(s)	60, 313, 616
LmnI	GCTCC	2 cut(s)	120, 597
Lsp1109I	GCAGC	7 cut(s)	142, 146, 246, 264, 265, 268, 286
LweI	GCATC	2 cut(s)	88, 484
MalI	GATC	3 cut(s)	62, 315, 618
MboI	GATC	3 cut(s)	60, 313, 616
MboII	GAAGA	2 cut(s)	227, 629
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	1 cut(s)	671
Mly113I	GGCGCC	2 cut(s)	165, 428
MlyI	GAGTC	1 cut(s)	13
MroI	TCCGGA	1 cut(s)	36
MspA1I	CMGCKG	5 cut(s)	133, 250, 259, 277, 365
MspI	CCGG	9 cut(s)	37, 111, 147, 300, 317, 332, 342, 431, 440
MspR9I	CCNGG	8 cut(s)	55, 112, 301, 318, 326, 342, 343, 432
MvaI	CCWGG	2 cut(s)	55, 326
MvnI	CGCG	4 cut(s)	250, 365, 410, 660
MwoI	GCNNNNNNNGC	9 cut(s)	107, 256, 259, 371, 374, 404, 436, 527, 530
NarI	GGCGCC	2 cut(s)	165, 428
NciI	CCSGG	6 cut(s)	112, 301, 318, 342, 343, 432
NdeII	GATC	3 cut(s)	60, 313, 616
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	6 cut(s)	166, 304, 315, 330, 429, 593
PaeR7I	CTCGAG	2 cut(s)	65, 621
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 628
PfeI	GAWTC	7 cut(s)	150, 283, 308, 554, 584, 626, 655
Pfl23II	CGTACG	1 cut(s)	612
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	2 cut(s)	168, 431
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	53, 324
PspGI	CCWGG	2 cut(s)	53, 324
PspLI	CGTACG	1 cut(s)	612
PspN4I	GGNNCC	6 cut(s)	166, 304, 315, 330, 429, 593
PspPI	GGNCC	3 cut(s)	34, 303, 329
PspXI	VCTCGAGB	1 cut(s)	65
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
PstNI	CAGNNNCTG	3 cut(s)	136, 259, 280
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	2 cut(s)	259, 277
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SacII	CCGCGG	2 cut(s)	251, 366
Sau3AI	GATC	3 cut(s)	60, 313, 616
Sau96I	GGNCC	3 cut(s)	34, 303, 329
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	8 cut(s)	55, 112, 301, 318, 326, 342, 343, 432
SetI	ASST	8 cut(s)	72, 125, 228, 261, 270, 279, 360, 577
SfaNI	GCATC	2 cut(s)	88, 484
SfoI	GGCGCC	2 cut(s)	166, 429
Sfr274I	CTCGAG	2 cut(s)	65, 621
Sfr303I	CCGCGG	2 cut(s)	251, 366
SgrAI	CRCCGGYG	1 cut(s)	439
SgrBI	CCGCGG	2 cut(s)	251, 366
SinI	GGWCC	3 cut(s)	34, 303, 329
SlaI	CTCGAG	2 cut(s)	65, 621
SmaI	CCCGGG	1 cut(s)	343
SmlI	CTYRAG	2 cut(s)	65, 621
SmoI	CTYRAG	2 cut(s)	65, 621
Sse9I	AATT	1 cut(s)	671
SspDI	GGCGCC	2 cut(s)	164, 427
StyD4I	CCNGG	8 cut(s)	53, 110, 299, 316, 324, 340, 341, 430
TaaI	ACNGT	4 cut(s)	34, 202, 612, 698
TaqI	TCGA	6 cut(s)	66, 204, 567, 587, 622, 631
TasI	AATT	1 cut(s)	671
TfiI	GAWTC	7 cut(s)	150, 283, 308, 554, 584, 626, 655
TseI	GCWGC	7 cut(s)	130, 159, 253, 256, 259, 274, 277
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	2 cut(s)	199, 491
TspMI	CCCGGG	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	34, 303, 329
XapI	RAATTY	1 cut(s)	671
XhoI	CTCGAG	2 cut(s)	65, 621
XmaI	CCCGGG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.