FvH4_3g01290

Prokaryotic RING finger family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007033
Physical Location & Seq
Reverse (-)
664402 .. 665112
711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01290.t1

Sequence Viewer

Length: 711 bp
ATGAGTCAACTGAGTCTGGTGTTGCAGGAAACTGTCCGGAGGGGAAGGGAGGCCAGGACGATTCTGGAGGTTTTAAGAGAGCAAATGGACGACGGCGATGCGGTCACGGCAGGGAGGAGGAGTTTCAAGCAGCGGCTGAGATTGACCGGAATAGGATGCTGCGGCGCCGCGTGGGGATTCGGACGGACGGCCACGATTAACGTAGAGGAAGATGAGGTAGGACAACAGCAACCGCGGCAACAAGAGGAGCAGCAGCTGCAGATGCCGAACCTCTCGCAGTTGCTGATACTGGGCCAGGCAGCCGGGTCGGATTCGGATCCGGGTTGCTTGGGTCCGGTCAACTCCGGGTCGGGTATGAACCTCGCGGCGGCGCTGGCGGCGGAGAGGCATTACCGGGAGGCGGACGAGGCCGCGGCGTTGCAGACGACGGCGCCAGGGACGCCGATGAGGGTGTCGCTGATGAGGTTACTGGAGGAGACGGAAATGGACGGCTGCGATGTGGTGGCGGGGGAGAAGAGTGAGAAAGCGACGGGTGCGGGAGTGGTGGGGTGTGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATACCATGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGGTGTGGCTTAATCGAGGCTCCTGTCCCCTCTGCAACCGTACGATCCTCGAGATTCTCGATATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

237

Amino Acids

25.42

Weight (kDa)

5.24

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 186 - 230 5.7e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 188 - 225 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 188 - 225 1.6e-06 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 188 - 229 7.2e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 164, 430
AccII CGCG 5 cut(s) 170, 235, 365, 413, 593
AccIII TCCGGA 1 cut(s) 36
AclWI GGATC 3 cut(s) 311, 324, 679
AcoI YGGCCR 1 cut(s) 189
AcyI GRCGYC 3 cut(s) 165, 431, 440
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 367, 400
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 3 cut(s) 53, 294, 433
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 3 cut(s) 311, 324, 679
AlwNI CAGNNNCTG 3 cut(s) 136, 256, 283
Ama87I CYCGRG 1 cut(s) 689
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 4 cut(s) 51, 189, 292, 408
ApeKI GCWGC 8 cut(s) 130, 159, 250, 253, 256, 299, 492, 564
AspLEI GCGC 4 cut(s) 167, 373, 433, 593
AspS9I GGNCC 2 cut(s) 292, 332
AsuC2I CCSGG 4 cut(s) 304, 321, 346, 395
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 615
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 2 cut(s) 164, 430
BbvI GCAGC 8 cut(s) 142, 146, 243, 262, 265, 311, 479, 551
BceAI ACGGC 5 cut(s) 109, 123, 204, 444, 505
BcgI CGANNNNNNTGC 4 cut(s) 80, 114, 288, 322
BciT130I CCWGG 3 cut(s) 55, 296, 435
BcnI CCSGG 4 cut(s) 304, 321, 346, 395
BcoDI GTCTC 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 257
BfoI RGCGCY 3 cut(s) 168, 374, 434
Bme1390I CCNGG 7 cut(s) 55, 296, 304, 321, 346, 395, 435
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 292, 332
BmiI GGNNCC 5 cut(s) 166, 318, 333, 432, 661
BmrFI CCNGG 7 cut(s) 55, 296, 304, 321, 346, 395, 435
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 3 cut(s) 88, 146, 252
BmuI ACTGGG 1 cut(s) 299
BpmI CTGGAG 2 cut(s) 86, 491
BpuMI CCSGG 4 cut(s) 304, 321, 346, 395
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 3 cut(s) 165, 431, 440
BsaJI CCNNGG 3 cut(s) 233, 411, 434
BsaWI WCCGGW 3 cut(s) 36, 146, 334
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 400
Bse1I ACTGG 2 cut(s) 294, 474
Bse8I GATNNNNATC 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 3 cut(s) 55, 296, 435
BseDI CCNNGG 3 cut(s) 233, 411, 434
BseGI GGATG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 367, 400
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 294, 474
BseRI GAGGAG 4 cut(s) 130, 133, 260, 488
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 8 cut(s) 142, 146, 243, 262, 265, 311, 479, 551
Bsh1236I CGCG 5 cut(s) 170, 235, 365, 413, 593
BshFI GGCC 4 cut(s) 53, 191, 294, 410
BshNI GGYRCC 2 cut(s) 164, 430
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 7 cut(s) 37, 147, 303, 320, 335, 345, 394
BsiWI CGTACG 1 cut(s) 680
BslFI GGGAC 2 cut(s) 451, 651
BslI CCNNNNNNNGG 2 cut(s) 367, 400
BsmAI GTCTC 1 cut(s) 470
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 2 cut(s) 451, 651
BsnI GGCC 4 cut(s) 53, 191, 294, 410
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 615
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 2 cut(s) 316, 684
BspANI GGCC 4 cut(s) 53, 191, 294, 410
BspCNI CTCAG 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 5 cut(s) 170, 235, 365, 413, 593
BspLI GGNNCC 5 cut(s) 166, 318, 333, 432, 661
BspMAI CTGCAG 1 cut(s) 261
BspPI GGATC 3 cut(s) 311, 324, 679
BspT107I GGYRCC 2 cut(s) 164, 430
BsrI ACTGG 2 cut(s) 294, 474
BssECI CCNNGG 3 cut(s) 233, 411, 434
BssMI GATC 2 cut(s) 316, 684
BssNI GRCGYC 3 cut(s) 165, 431, 440
Bst2UI CCWGG 3 cut(s) 55, 296, 435
Bst4CI ACNGT 2 cut(s) 34, 680
Bst6I CTCTTC 1 cut(s) 509
BstACI GRCGYC 3 cut(s) 165, 431, 440
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 11, 137
BstDSI CCRYGG 2 cut(s) 233, 411
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 5 cut(s) 170, 235, 365, 413, 593
BstH2I RGCGCY 3 cut(s) 168, 374, 434
BstHHI GCGC 4 cut(s) 167, 373, 433, 593
BstKTI GATC 2 cut(s) 319, 687
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 316, 684
BstNI CCWGG 3 cut(s) 55, 296, 435
BstSCI CCNGG 7 cut(s) 53, 294, 302, 319, 344, 393, 433
BstSFI CTRYAG 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 615
BstUI CGCG 5 cut(s) 170, 235, 365, 413, 593
BstV1I GCAGC 8 cut(s) 142, 146, 243, 262, 265, 311, 479, 551
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 4 cut(s) 53, 191, 294, 410
BtgI CCRYGG 2 cut(s) 233, 411
BtgZI GCGATG 2 cut(s) 111, 510
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 3 cut(s) 136, 256, 283
CfoI GCGC 4 cut(s) 167, 373, 433, 593
Cfr13I GGNCC 2 cut(s) 292, 332
Cfr42I CCGCGG 2 cut(s) 236, 414
CseI GACGC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 681
CviAII CATG 2 cut(s) 574, 606
CviQI GTAC 1 cut(s) 681
DdeI CTNAG 2 cut(s) 11, 137
DinI GGCGCC 2 cut(s) 166, 432
DpnI GATC 2 cut(s) 318, 686
DpnII GATC 2 cut(s) 316, 684
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
EciI GGCGGA 2 cut(s) 395, 416
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 689
EcoRII CCWGG 3 cut(s) 53, 294, 433
EcoRV GATATC 1 cut(s) 703
EgeI GGCGCC 2 cut(s) 166, 432
EheI GGCGCC 2 cut(s) 166, 432
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 2 cut(s) 577, 609
FaiI YATR 4 cut(s) 356, 575, 602, 607
FaqI GGGAC 2 cut(s) 451, 651
FatI CATG 2 cut(s) 573, 605
FauI CCCGC 2 cut(s) 499, 529
FokI GGATG 1 cut(s) 168
GlaI GCGC 4 cut(s) 166, 372, 432, 592
GsuI CTGGAG 2 cut(s) 86, 491
HaeII RGCGCY 3 cut(s) 168, 374, 434
HaeIII GGCC 4 cut(s) 53, 191, 294, 410
HapII CCGG 7 cut(s) 37, 147, 303, 320, 335, 345, 394
HgaI GACGC 1 cut(s) 448
HhaI GCGC 4 cut(s) 167, 373, 433, 593
Hin1I GRCGYC 3 cut(s) 165, 431, 440
Hin1II CATG 2 cut(s) 577, 609
Hin6I GCGC 4 cut(s) 165, 371, 431, 591
HinP1I GCGC 4 cut(s) 165, 371, 431, 591
HincII GTYRAC 2 cut(s) 8, 340
HindII GTYRAC 2 cut(s) 8, 340
HinfI GANTC 7 cut(s) 4, 13, 61, 177, 311, 554, 694
HpaII CCGG 7 cut(s) 37, 147, 303, 320, 335, 345, 394
Hpy166II GTNNAC 2 cut(s) 8, 340
Hpy188I TCNGA 4 cut(s) 182, 310, 316, 710
Hpy188III TCNNGA 4 cut(s) 37, 65, 691, 698
Hpy8I GTNNAC 2 cut(s) 8, 340
Hpy99I CGWCG 3 cut(s) 95, 430, 532
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 2 cut(s) 34, 680
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 6 cut(s) 25, 259, 421, 573, 624, 675
HpyF3I CTNAG 2 cut(s) 11, 137
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 3 cut(s) 165, 431, 440
Hsp92II CATG 2 cut(s) 577, 609
HspAI GCGC 4 cut(s) 165, 371, 431, 591
KasI GGCGCC 2 cut(s) 164, 430
Kpn2I TCCGGA 1 cut(s) 36
KspI CCGCGG 2 cut(s) 236, 414
Kzo9I GATC 2 cut(s) 316, 684
LmnI GCTCC 2 cut(s) 247, 665
Lsp1109I GCAGC 8 cut(s) 142, 146, 243, 262, 265, 311, 479, 551
LweI GCATC 3 cut(s) 88, 146, 252
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 103, 465
MalI GATC 2 cut(s) 318, 686
MboI GATC 2 cut(s) 316, 684
MboII GAAGA 4 cut(s) 221, 526, 595, 697
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 615
Mly113I GGCGCC 2 cut(s) 165, 431
MlyI GAGTC 2 cut(s) 13, 22
MmeI TCCRAC 1 cut(s) 288
MroI TCCGGA 1 cut(s) 36
MseI TTAA 3 cut(s) 74, 198, 651
MspA1I CMGCKG 4 cut(s) 133, 235, 256, 413
MspI CCGG 7 cut(s) 37, 147, 303, 320, 335, 345, 394
MspR9I CCNGG 7 cut(s) 55, 296, 304, 321, 346, 395, 435
MvaI CCWGG 3 cut(s) 55, 296, 435
MvnI CGCG 5 cut(s) 170, 235, 365, 413, 593
NarI GGCGCC 2 cut(s) 165, 431
NciI CCSGG 4 cut(s) 304, 321, 346, 395
NdeII GATC 2 cut(s) 316, 684
NlaIII CATG 2 cut(s) 577, 609
NlaIV GGNNCC 5 cut(s) 166, 318, 333, 432, 661
NmuCI GTSAC 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PfeI GAWTC 5 cut(s) 61, 177, 311, 554, 694
Pfl23II CGTACG 1 cut(s) 680
PleI GAGTC 2 cut(s) 12, 21
PluTI GGCGCC 2 cut(s) 168, 434
PpsI GAGTC 2 cut(s) 12, 21
Psp6I CCWGG 3 cut(s) 53, 294, 433
PspGI CCWGG 3 cut(s) 53, 294, 433
PspLI CGTACG 1 cut(s) 680
PspN4I GGNNCC 5 cut(s) 166, 318, 333, 432, 661
PspPI GGNCC 2 cut(s) 292, 332
PstI CTGCAG 1 cut(s) 261
PstNI CAGNNNCTG 3 cut(s) 136, 256, 283
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
SacII CCGCGG 2 cut(s) 236, 414
SaqAI TTAA 3 cut(s) 74, 198, 651
Sau3AI GATC 2 cut(s) 316, 684
Sau96I GGNCC 2 cut(s) 292, 332
SchI GAGTC 2 cut(s) 13, 22
ScrFI CCNGG 7 cut(s) 55, 296, 304, 321, 346, 395, 435
SduI GDGCHC 1 cut(s) 615
SetI ASST 8 cut(s) 72, 204, 219, 258, 273, 363, 467, 645
SfaNI GCATC 3 cut(s) 88, 146, 252
SfcI CTRYAG 1 cut(s) 257
SfoI GGCGCC 2 cut(s) 166, 432
Sfr274I CTCGAG 1 cut(s) 689
Sfr303I CCGCGG 2 cut(s) 236, 414
SgrBI CCGCGG 2 cut(s) 236, 414
SinI GGWCC 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SspDI GGCGCC 2 cut(s) 164, 430
StyD4I CCNGG 7 cut(s) 53, 294, 302, 319, 344, 393, 433
TaaI ACNGT 2 cut(s) 34, 680
TaiI ACGT 1 cut(s) 204
TaqI TCGA 4 cut(s) 635, 655, 690, 699
TfiI GAWTC 5 cut(s) 61, 177, 311, 554, 694
Tru1I TTAA 3 cut(s) 74, 198, 651
Tru9I TTAA 3 cut(s) 74, 198, 651
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 8 cut(s) 130, 159, 250, 253, 256, 299, 492, 564
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 371, 589
TspGWI ACGGA 2 cut(s) 199, 494
VpaK11BI GGWCC 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.