Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Reverse (-)

648856 .. 650625

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACGATACGGATGGAGCGAGAGGCGGGAGGAGGACCTTCAAGCAACGGCTCAGATTGAATGGGTTTGGCTGCTGTGGGGCCGCCTGGGTTTTTGGACGAACGGCGGCCATAAGCGTAAGAGATGGCGATGAGGACGACCAAGAGCCACAAAACCATCATCTACCACTACCACCACAACAACGAGTTGTAAGTGTGGTGGGCCAGGCTCAACCGGTCAACAATTGGGATCCGGATTGCGTGGGTCCGATTTCGACCGGGTCTGGCATGAACTTGGCTGCCGCCTTAGCAGCCGAGCGTCAGTTTCGGGCACCGCAAGAATCGGACGGAGGAGGGTCGGTGGTGGGGCCTGCGGGTGACGGAAGTGCAGTAACAACGGCACCTGGCACGCCGACGAGAGTATCGTTGATGAGATTGCTGGAGGAAACGGAAGTGGACGGCTGTGATGCGTTTGGTGGTGCGACGACAGAGAGCGACAAAGCAGAGGGAGGGCTGGGCAATGATACGGTGTGCTGCGTGTGCATGAGCAGGAAGAAAGGTGCAGCTTTCATCCCATGTGGGCACACCTTTTGCAGAGTGTGTTCGAGGGAGGTGTGGTTGAATCGAGGGTCTTGTCCCCTCTGCAACCGTTCGATCCTCGAGATCCTCGATATATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

220

Amino Acids

23.1

Weight (kDa)

5.1

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	310, 379
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	6 cut(s)	27, 84, 107, 282, 314, 353
AclWI	GGATC	4 cut(s)	224, 237, 628, 637
AcoI	YGGCCR	1 cut(s)	108
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	43, 61, 601
AjnI	CCWGG	3 cut(s)	86, 204, 382
AluBI	AGCT	1 cut(s)	545
AluI	AGCT	1 cut(s)	545
AlwI	GGATC	4 cut(s)	224, 237, 628, 637
Ama87I	CYCGRG	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	4 cut(s)	81, 108, 202, 347
ApeKI	GCWGC	5 cut(s)	72, 278, 290, 513, 542
AsiGI	ACCGGT	1 cut(s)	214
AspS9I	GGNCC	5 cut(s)	36, 81, 202, 245, 347
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	36, 245
BaeGI	GKGCMC	2 cut(s)	313, 564
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BamHI	GGATCC	1 cut(s)	229
BanI	GGYRCC	2 cut(s)	310, 379
BbvI	GCAGC	5 cut(s)	59, 265, 302, 500, 554
BccI	CCATC	3 cut(s)	8, 119, 165
BceAI	ACGGC	4 cut(s)	65, 120, 393, 454
BciT130I	CCWGG	3 cut(s)	88, 206, 384
BcnI	CCSGG	1 cut(s)	259
BisI	GCNGC	8 cut(s)	73, 84, 108, 279, 282, 291, 514, 543
BlsI	GCNGC	8 cut(s)	74, 85, 109, 280, 283, 292, 515, 544
Bme1390I	CCNGG	4 cut(s)	88, 206, 259, 384
Bme18I	GGWCC	2 cut(s)	36, 245
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	5 cut(s)	36, 81, 202, 245, 347
BmiI	GGNNCC	6 cut(s)	82, 231, 246, 312, 348, 381
BmrFI	CCNGG	4 cut(s)	88, 206, 259, 384
BmsI	GCATC	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	2 cut(s)	214, 232
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 581, 611
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	88, 206, 384
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	19, 549
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	67
BseRI	GAGGAG	2 cut(s)	46, 345
BseSI	GKGCMC	2 cut(s)	313, 564
BseXI	GCAGC	5 cut(s)	59, 265, 302, 500, 554
BseYI	CCCAGC	1 cut(s)	493
BsgI	GTGCAG	2 cut(s)	387, 561
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	4 cut(s)	83, 110, 204, 349
BshNI	GGYRCC	2 cut(s)	310, 379
BshTI	ACCGGT	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	3 cut(s)	215, 233, 258
BslFI	GGGAC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	83, 110, 204, 349
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	2 cut(s)	313, 564
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	229, 633, 642
BspACI	CCGC	6 cut(s)	27, 84, 107, 282, 314, 353
BspANI	GGCC	4 cut(s)	83, 110, 204, 349
BspCNI	CTCAG	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	232
BspLI	GGNNCC	6 cut(s)	82, 231, 246, 312, 348, 381
BspPI	GGATC	4 cut(s)	224, 237, 628, 637
BspT107I	GGYRCC	2 cut(s)	310, 379
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	229, 633, 642
Bst2UI	CCWGG	3 cut(s)	88, 206, 384
Bst4CI	ACNGT	2 cut(s)	508, 629
BstC8I	GCNNGC	2 cut(s)	351, 389
BstDEI	CTNAG	2 cut(s)	53, 286
BstF5I	GGATG	2 cut(s)	19, 549
BstKTI	GATC	3 cut(s)	232, 636, 645
BstMBI	GATC	3 cut(s)	229, 633, 642
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 290, 519
BstNI	CCWGG	3 cut(s)	88, 206, 384
BstSCI	CCNGG	4 cut(s)	86, 204, 257, 382
BstSLI	GKGCMC	2 cut(s)	313, 564
BstV1I	GCAGC	5 cut(s)	59, 265, 302, 500, 554
BstX2I	RGATCY	2 cut(s)	229, 642
BstYI	RGATCY	2 cut(s)	229, 642
BsuRI	GGCC	4 cut(s)	83, 110, 204, 349
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	19, 549
Cac8I	GCNNGC	2 cut(s)	351, 389
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	5 cut(s)	36, 81, 202, 245, 347
CseI	GACGC	1 cut(s)	287
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	3 cut(s)	268, 523, 555
DdeI	CTNAG	2 cut(s)	53, 286
DpnI	GATC	3 cut(s)	231, 635, 644
DpnII	GATC	3 cut(s)	229, 633, 642
EaeI	YGGCCR	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	36, 245
Eco88I	CYCGRG	1 cut(s)	638
EcoO109I	RGGNCCY	2 cut(s)	36, 347
EcoRII	CCWGG	3 cut(s)	86, 204, 382
FaeI	CATG	3 cut(s)	271, 526, 558
FaiI	YATR	5 cut(s)	113, 269, 524, 556, 653
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	3 cut(s)	267, 522, 554
FauI	CCCGC	2 cut(s)	20, 346
Fnu4HI	GCNGC	8 cut(s)	73, 84, 108, 279, 282, 291, 514, 543
FokI	GGATG	2 cut(s)	26, 536
Fsp4HI	GCNGC	8 cut(s)	73, 84, 108, 279, 282, 291, 514, 543
GluI	GCNGC	8 cut(s)	73, 84, 108, 279, 282, 291, 514, 543
GsaI	CCCAGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	4 cut(s)	83, 110, 204, 349
HapII	CCGG	3 cut(s)	215, 233, 258
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	271, 526, 558
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	320, 601
HpaII	CCGG	3 cut(s)	215, 233, 258
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	220, 436
Hpy188I	TCNGA	3 cut(s)	56, 249, 325
Hpy188III	TCNNGA	2 cut(s)	233, 640
Hpy8I	GTNNAC	2 cut(s)	220, 436
Hpy99I	CGWCG	2 cut(s)	397, 466
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	508, 629
HpyCH4V	TGCA	5 cut(s)	368, 522, 542, 573, 624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 290, 519
HpyF3I	CTNAG	2 cut(s)	53, 286
Hsp92II	CATG	3 cut(s)	271, 526, 558
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	229, 633, 642
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	5 cut(s)	59, 265, 302, 500, 554
LweI	GCATC	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	356, 370
MalI	GATC	3 cut(s)	231, 635, 644
MboI	GATC	3 cut(s)	229, 633, 642
MboII	GAAGA	1 cut(s)	544
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	2 cut(s)	229, 642
MhlI	GDGCHC	2 cut(s)	313, 564
MluCI	AATT	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	232
MspI	CCGG	3 cut(s)	215, 233, 258
MspR9I	CCNGG	4 cut(s)	88, 206, 259, 384
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	3 cut(s)	88, 206, 384
MwoI	GCNNNNNNNGC	3 cut(s)	287, 290, 519
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	3 cut(s)	229, 633, 642
NlaIII	CATG	3 cut(s)	271, 526, 558
NlaIV	GGNNCC	6 cut(s)	82, 231, 246, 312, 348, 381
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 401, 645
PfeI	GAWTC	2 cut(s)	320, 601
PflFI	GACNNNGTC	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	8 cut(s)	74, 85, 109, 280, 283, 292, 515, 544
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	86, 204, 382
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	3 cut(s)	86, 204, 382
PspN4I	GGNNCC	6 cut(s)	82, 231, 246, 312, 348, 381
PspPI	GGNCC	5 cut(s)	36, 81, 202, 245, 347
PspPPI	RGGWCCY	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	229, 642
PsyI	GACNNNGTC	1 cut(s)	259
SatI	GCNGC	8 cut(s)	73, 84, 108, 279, 282, 291, 514, 543
Sau3AI	GATC	3 cut(s)	229, 633, 642
Sau96I	GGNCC	5 cut(s)	36, 81, 202, 245, 347
ScrFI	CCNGG	4 cut(s)	88, 206, 259, 384
SduI	GDGCHC	2 cut(s)	313, 564
SetI	ASST	6 cut(s)	41, 385, 541, 547, 569, 594
SfaNI	GCATC	1 cut(s)	436
Sfr274I	CTCGAG	1 cut(s)	638
SinI	GGWCC	2 cut(s)	36, 245
SlaI	CTCGAG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	6 cut(s)	27, 84, 107, 282, 314, 353
StyD4I	CCNGG	4 cut(s)	86, 204, 257, 382
TaaI	ACNGT	2 cut(s)	508, 629
TaqI	TCGA	6 cut(s)	254, 584, 604, 632, 639, 648
TasI	AATT	1 cut(s)	223
TauI	GCSGC	3 cut(s)	86, 110, 284
TfiI	GAWTC	2 cut(s)	320, 601
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	5 cut(s)	72, 278, 290, 513, 542
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	284, 538
TspGWI	ACGGA	4 cut(s)	26, 342, 375, 443
Tth111I	GACNNNGTC	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	36, 245
XhoI	CTCGAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.