Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007033

Physical Location & Seq

Genomic Coordinates Reverse (-)

92144340 .. 92145555

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGACGACGGCGATGCGGCCACGGCAGGGAGGAGGAGCTTCAAGCAGCGGCTGAGATTGACCGGAATCGGGTGCTGCGGCGCCGTCTGGGGATTTGGACGGACGGCCACGATTACCGTCGAGGACGATGAAGAACAACACCTACATCCGCCGCAACAACAACCGCGGCAGCAGCTGCCGAACCTATCGCAGCTGCTGATTCTGGGGCAGGCGGCCGGGTCCGATTCGGATCCGGGTTGCCTGGGTCCGGTCAACCCCGGGTCGGGGATGAACCTCGCCGCGGCTCTGGCTGCGGAACGGCATTATCGGGAGGCGGACGAGGCCGCGACGGGTGGTGGGGCGGCGCCGGGGACGCCGATGAGGGTGTCGCTGATGAGATTGCTGGAGGAGACGGAAATGGACGGGTGCGATGCGGCGGAGGAGAAAAATGAGAAGCAGCGGCGGCGACGACGGGGGTGGTGGGTTGTGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATACCATGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGGTGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

188

Amino Acids

20.26

Weight (kDa)

8.48

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62370
fragaria_vesca	FvH4_3g01290
malus_domestica	MD05G1353900.v1.1 MD10G1328000.v1.1
prunus_persica	Prupe.4G013900_v2.0.a1 Prupe.4G013900_v2.0.a1
pyrus_communis	pycom10g27790 pycom17g07310
rosa_chinensis	RchiOBHm_Chr5g0001841
rosa_laevigata	RLG00000030976
rosa_multiflora	Rmu_sc0000378.1_g000001 Rmu_ssc0000237.1_g000009
rosa_roxburghii	Rroxscaffold_1G00071270 Rroxscaffold_1G00074510
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh2DG441100 Rh3DG329300 Rh4DG083300 Rh5AG014700 Rh5BG018100 Rh5BG200200 Rh5CG015800 Rh5DG016200 Rh5DG553000
rosa_wichuraiana	Rw5G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 343
AccII	CGCG	4 cut(s)	166, 281, 326, 508
AclWI	GGATC	2 cut(s)	224, 237
AcoI	YGGCCR	3 cut(s)	18, 105, 213
AcyI	GRCGYC	3 cut(s)	81, 344, 353
AfiI	CCNNNNNNNGG	7 cut(s)	27, 69, 247, 262, 263, 264, 280
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	39, 175, 193
AluI	AGCT	3 cut(s)	39, 175, 193
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	2 cut(s)	224, 237
AlwNI	CAGNNNCTG	3 cut(s)	52, 175, 196
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	4 cut(s)	18, 105, 213, 321
AspLEI	GCGC	3 cut(s)	83, 346, 508
AspS9I	GGNCC	2 cut(s)	219, 245
AsuC2I	CCSGG	5 cut(s)	217, 234, 258, 259, 348
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	219, 245
BaeGI	GKGCMC	1 cut(s)	530
BamHI	GGATCC	1 cut(s)	229
BanI	GGYRCC	2 cut(s)	80, 343
BceAI	ACGGC	5 cut(s)	25, 39, 68, 120, 314
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	5 cut(s)	217, 234, 258, 259, 348
BcoDI	GTCTC	1 cut(s)	383
BfoI	RGCGCY	2 cut(s)	84, 347
Bme1390I	CCNGG	6 cut(s)	217, 234, 242, 258, 259, 348
Bme18I	GGWCC	2 cut(s)	219, 245
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	219, 245
BmiI	GGNNCC	5 cut(s)	82, 220, 231, 246, 345
BmrFI	CCNGG	6 cut(s)	217, 234, 242, 258, 259, 348
BmsI	GCATC	2 cut(s)	4, 400
BpmI	CTGGAG	1 cut(s)	404
BpuMI	CCSGG	5 cut(s)	217, 234, 258, 259, 348
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	3 cut(s)	81, 344, 353
BsaJI	CCNNGG	7 cut(s)	21, 164, 241, 256, 257, 279, 347
BsaWI	WCCGGW	2 cut(s)	62, 247
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 69, 247, 262, 263, 264, 280
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	7 cut(s)	21, 164, 241, 256, 257, 279, 347
BseGI	GGATG	2 cut(s)	145, 273
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	7 cut(s)	27, 69, 247, 262, 263, 264, 280
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	4 cut(s)	46, 49, 401, 434
BseSI	GKGCMC	1 cut(s)	530
BseX3I	CGGCCG	1 cut(s)	213
Bsh1236I	CGCG	4 cut(s)	166, 281, 326, 508
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	20, 107, 215, 323
BshNI	GGYRCC	2 cut(s)	80, 343
BsiEI	CGRYCG	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	6 cut(s)	63, 216, 233, 248, 258, 347
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	7 cut(s)	27, 69, 247, 262, 263, 264, 280
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	4 cut(s)	20, 107, 215, 323
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	4 cut(s)	20, 107, 215, 323
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	4 cut(s)	166, 281, 326, 508
BspLI	GGNNCC	5 cut(s)	82, 220, 231, 246, 345
BspPI	GGATC	2 cut(s)	224, 237
BspT107I	GGYRCC	2 cut(s)	80, 343
BssECI	CCNNGG	7 cut(s)	21, 164, 241, 256, 257, 279, 347
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	3 cut(s)	81, 344, 353
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	3 cut(s)	81, 344, 353
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	3 cut(s)	21, 164, 279
BstF5I	GGATG	2 cut(s)	145, 273
BstFNI	CGCG	4 cut(s)	166, 281, 326, 508
BstH2I	RGCGCY	2 cut(s)	84, 347
BstHHI	GCGC	3 cut(s)	83, 346, 508
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 172, 175, 287, 290, 320, 352, 442, 485
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	6 cut(s)	215, 232, 240, 256, 257, 346
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	4 cut(s)	166, 281, 326, 508
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	4 cut(s)	20, 107, 215, 323
BtgI	CCRYGG	3 cut(s)	21, 164, 279
BtgZI	GCGATG	2 cut(s)	27, 423
BtsCI	GGATG	2 cut(s)	145, 273
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	3 cut(s)	52, 175, 196
CfoI	GCGC	3 cut(s)	83, 346, 508
Cfr13I	GGNCC	2 cut(s)	219, 245
Cfr42I	CCGCGG	2 cut(s)	167, 282
Cfr9I	CCCGGG	1 cut(s)	257
CseI	GACGC	1 cut(s)	361
CviAII	CATG	2 cut(s)	489, 521
DdeI	CTNAG	1 cut(s)	53
DinI	GGCGCC	2 cut(s)	82, 345
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	3 cut(s)	18, 105, 213
EagI	CGGCCG	1 cut(s)	213
EciI	GGCGGA	3 cut(s)	138, 329, 431
EclXI	CGGCCG	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	219, 245
Eco52I	CGGCCG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	240
EgeI	GGCGCC	2 cut(s)	82, 345
EheI	GGCGCC	2 cut(s)	82, 345
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	492, 524
FaiI	YATR	3 cut(s)	490, 517, 522
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	2 cut(s)	488, 520
FokI	GGATG	2 cut(s)	132, 280
GlaI	GCGC	3 cut(s)	82, 345, 507
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	2 cut(s)	84, 347
HaeIII	GGCC	4 cut(s)	20, 107, 215, 323
HapII	CCGG	6 cut(s)	63, 216, 233, 248, 258, 347
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	3 cut(s)	83, 346, 508
Hin1I	GRCGYC	3 cut(s)	81, 344, 353
Hin1II	CATG	2 cut(s)	492, 524
Hin6I	GCGC	3 cut(s)	81, 344, 506
HinP1I	GCGC	3 cut(s)	81, 344, 506
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	66, 199, 224, 469
HpaII	CCGG	6 cut(s)	63, 216, 233, 248, 258, 347
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	223, 229
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	5 cut(s)	11, 122, 331, 450, 453
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	488, 539
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 172, 175, 287, 290, 320, 352, 442, 485
HpyF3I	CTNAG	1 cut(s)	53
Hsp92I	GRCGYC	3 cut(s)	81, 344, 353
Hsp92II	CATG	2 cut(s)	492, 524
HspAI	GCGC	3 cut(s)	81, 344, 506
KasI	GGCGCC	2 cut(s)	80, 343
KspI	CCGCGG	2 cut(s)	167, 282
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	36
LweI	GCATC	2 cut(s)	4, 400
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	143, 510
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	530
Mly113I	GGCGCC	2 cut(s)	81, 344
MspA1I	CMGCKG	6 cut(s)	49, 166, 175, 193, 281, 439
MspI	CCGG	6 cut(s)	63, 216, 233, 248, 258, 347
MspR9I	CCNGG	6 cut(s)	217, 234, 242, 258, 259, 348
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	4 cut(s)	166, 281, 326, 508
MwoI	GCNNNNNNNGC	9 cut(s)	23, 172, 175, 287, 290, 320, 352, 442, 485
NarI	GGCGCC	2 cut(s)	81, 344
NciI	CCSGG	5 cut(s)	217, 234, 258, 259, 348
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	492, 524
NlaIV	GGNNCC	5 cut(s)	82, 220, 231, 246, 345
PfeI	GAWTC	4 cut(s)	66, 199, 224, 469
PluTI	GGCGCC	2 cut(s)	84, 347
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	5 cut(s)	82, 220, 231, 246, 345
PspPI	GGNCC	2 cut(s)	219, 245
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PstNI	CAGNNNCTG	3 cut(s)	52, 175, 196
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	2 cut(s)	175, 193
SacII	CCGCGG	2 cut(s)	167, 282
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	219, 245
ScrFI	CCNGG	6 cut(s)	217, 234, 242, 258, 259, 348
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	7 cut(s)	41, 144, 177, 186, 195, 276, 560
SfaNI	GCATC	2 cut(s)	4, 400
SfoI	GGCGCC	2 cut(s)	82, 345
Sfr303I	CCGCGG	2 cut(s)	167, 282
SgrBI	CCGCGG	2 cut(s)	167, 282
SinI	GGWCC	2 cut(s)	219, 245
SmaI	CCCGGG	1 cut(s)	259
SspDI	GGCGCC	2 cut(s)	80, 343
StyD4I	CCNGG	6 cut(s)	215, 232, 240, 256, 257, 346
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	120, 550
TfiI	GAWTC	4 cut(s)	66, 199, 224, 469
TspDTI	ATGAA	3 cut(s)	144, 284, 504
TspGWI	ACGGA	2 cut(s)	115, 407
TspMI	CCCGGG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	219, 245
XmaI	CCCGGG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.