Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

23857178 .. 23858544

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAGTTCTCCGGTGATAAATCAAGACATGATCCAAGAATTTCTTTCTTATCTTCCGGCGTCAAAAATCGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTCATGGTTTGTCAATCTTAATCTCCTTAGAACCAATCGTATTTCGGGATACTTCATACAACACTACATAGTAAAAGGACACGAACTTCGAACCAGTTTTGTCCATGAGAGGAGTGATTTACAAAACAATGGAGTCTCCATCGACTTTCTGCCACCCGGAATGATAAAGATCGAAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTAAGTATACAAAACCATCACGTGGATACATAGTCTTCAAACCAACCACTAAACAGTATCAGGTCATACCAAAGCCAGAAGTGAAGGGTTGGGATATGTCATTGGGTTTAGCGGTAATCGGATTGAACCCTTTCCGGTATAAAATACAAAGGCTTTCGCAGTCTCGGCGTATGTGTATGTCTCGGGGTATCTACCATTTGAATCACAGAACTTTTATGTGCGAAGTTTTCGATTCTGATTCGTTTACCTGGAAGAGATTAGAAAATTTGCGTCTACCAAAAACAGACAGATTAATTTTTTCCAACCCGATACAAGTTTCGGGGTTCTTGCATTGGATATCACGGAACAACAATGTGATCCGGTTTTGTCTCAAAACCGAAACTTGGTCCTTCTTCCATACTCCGAACTCTGATGTTTTCTCAGGATTAGTCAGATACGAAGGGAAGCTAGGTGCTATTCGTCAGTGGACAAACAAAGATCAAGAAGATGTTCACGAGTTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGTTAAAGTGAAAGATATTAAAAGCATTGGAGTAGATTTGATTACGTGGACTCCAAGCAACGACGTTGTATTGTTTCGTAGTAGTGATCGTGGTTGCCTCTACAACATAAACGCAGAGAAGTTGAATTTAGTTTATGCAAAAAAAGAGGGATCTGATTGTTCTTTCGTTTGTTTTCCGTTTTGTTCTGATTACGAGAGGGTTGATCTGAACGGAAGAAGCAACGGGCCGACACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_3

Protein Analysis

364

Amino Acids

42.32

Weight (kDa)

9.35

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	91 - 289	4.2e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	2 cut(s)	332, 598
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	3 cut(s)	25, 676, 1015
AcsI	RAATTY	4 cut(s)	38, 74, 589, 982
AcvI	CACGTG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	347, 708
AgsI	TTSAA	5 cut(s)	364, 451, 526, 848, 982
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	111, 293, 772
AluI	AGCT	3 cut(s)	111, 293, 772
Alw26I	GTCTC	4 cut(s)	256, 492, 510, 698
AlwI	GGATC	3 cut(s)	25, 676, 1015
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	1 cut(s)	1082
ApoI	RAATTY	4 cut(s)	38, 74, 589, 982
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AseI	ATTAAT	1 cut(s)	617
Asp700I	GAANNNNTTC	2 cut(s)	455, 813
AspS9I	GGNCC	2 cut(s)	711, 1082
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	818
BbrPI	CACGTG	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	352
BccI	CCATC	2 cut(s)	263, 349
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	2 cut(s)	158, 344
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	4 cut(s)	256, 492, 510, 698
BfaI	CTAG	1 cut(s)	773
BfuI	GTATCC	2 cut(s)	158, 344
Bme1390I	CCNGG	2 cut(s)	273, 574
Bme18I	GGWCC	1 cut(s)	711
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	711, 1082
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	273, 574
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	2 cut(s)	347, 903
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	59
BsaWI	WCCGGW	3 cut(s)	10, 459, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 708
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	574
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	347, 708
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	1084
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	5 cut(s)	11, 56, 273, 460, 685
BslI	CCNNNNNNNGG	2 cut(s)	347, 708
BsmAI	GTCTC	4 cut(s)	256, 492, 510, 698
BsnI	GGCC	1 cut(s)	1084
BsoBI	CYCGRG	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	1 cut(s)	1084
BspCNI	CTCAG	1 cut(s)	758
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	25, 676, 1015
BspT104I	TTCGAA	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
BssNAI	GTATAC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	818
Bst1107I	GTATAC	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	347, 903
BstBI	TTCGAA	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	143, 745
BstKTI	GATC	7 cut(s)	33, 288, 684, 805, 946, 1010, 1063
BstMAI	GTCTC	4 cut(s)	256, 492, 510, 698
BstMBI	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 490
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	271, 572
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
BstZ17I	GTATAC	1 cut(s)	333
BsuI	GTATCC	2 cut(s)	158, 344
BsuRI	GGCC	1 cut(s)	1084
BtsIMutI	CAGTG	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	711, 1082
CseI	GACGC	2 cut(s)	48, 584
CviAII	CATG	4 cut(s)	28, 120, 221, 308
CviJI	RGCY	7 cut(s)	82, 111, 293, 400, 478, 772, 1084
CviKI_1	RGCY	7 cut(s)	82, 111, 293, 400, 478, 772, 1084
DdeI	CTNAG	2 cut(s)	143, 745
DpnI	GATC	7 cut(s)	32, 287, 683, 804, 945, 1009, 1062
DpnII	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	711
Eco72I	CACGTG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	572
EcoRV	GATATC	1 cut(s)	663
FaeI	CATG	4 cut(s)	31, 123, 224, 311
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	4 cut(s)	27, 119, 220, 307
FblI	GTMKAC	2 cut(s)	332, 598
FspBI	CTAG	1 cut(s)	773
HaeIII	GGCC	1 cut(s)	1084
HapII	CCGG	5 cut(s)	11, 56, 273, 460, 685
HgaI	GACGC	2 cut(s)	48, 584
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	31, 123, 224, 311
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	6 cut(s)	116, 249, 526, 557, 563, 907
HpaII	CCGG	5 cut(s)	11, 56, 273, 460, 685
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	6 cut(s)	333, 570, 599, 792, 817, 906
Hpy188I	TCNGA	9 cut(s)	71, 446, 562, 729, 736, 758, 1012, 1045, 1065
Hpy188III	TCNNGA	6 cut(s)	23, 85, 162, 747, 806, 818
Hpy8I	GTNNAC	6 cut(s)	333, 570, 599, 792, 817, 906
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	3 cut(s)	403, 724, 758
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	3 cut(s)	346, 902, 921
HpyCH4V	TGCA	4 cut(s)	99, 302, 655, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 490
HpyF3I	CTNAG	2 cut(s)	143, 745
HpySE526I	ACGT	3 cut(s)	346, 902, 921
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	31, 123, 224, 311
Kzo9I	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
LmnI	GCTCC	1 cut(s)	87
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	3 cut(s)	346, 902, 921
MalI	GATC	7 cut(s)	32, 287, 683, 804, 945, 1009, 1062
MboI	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
MboII	GAAGA	6 cut(s)	44, 352, 589, 709, 821, 1083
MflI	RGATCY	1 cut(s)	1007
MluCI	AATT	5 cut(s)	38, 74, 589, 618, 982
MlyI	GAGTC	3 cut(s)	125, 258, 901
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	4 cut(s)	219, 965, 997, 1047
MroXI	GAANNNNTTC	2 cut(s)	455, 813
MseI	TTAA	7 cut(s)	135, 327, 617, 833, 861, 876, 1093
MspI	CCGG	5 cut(s)	11, 56, 273, 460, 685
MspR9I	CCNGG	2 cut(s)	273, 574
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	299, 490
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
NlaIII	CATG	4 cut(s)	31, 123, 224, 311
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	455, 813
PfeI	GAWTC	3 cut(s)	526, 557, 563
PflMI	CCANNNNNTGG	1 cut(s)	347
PleI	GAGTC	3 cut(s)	124, 257, 901
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
PpsI	GAGTC	3 cut(s)	124, 257, 901
Ppu21I	YACGTR	2 cut(s)	347, 903
PshBI	ATTAAT	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	572
PspCI	CACGTG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	2 cut(s)	711, 1082
PsuI	RGATCY	1 cut(s)	1007
SaqAI	TTAA	7 cut(s)	135, 327, 617, 833, 861, 876, 1093
Sau3AI	GATC	7 cut(s)	30, 285, 681, 802, 943, 1007, 1060
Sau96I	GGNCC	2 cut(s)	711, 1082
SchI	GAGTC	3 cut(s)	125, 258, 901
ScrFI	CCNGG	2 cut(s)	273, 574
SetI	ASST	9 cut(s)	113, 295, 349, 390, 575, 774, 778, 905, 924
SfaNI	GCATC	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	711
Sse9I	AATT	5 cut(s)	38, 74, 589, 618, 982
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	2 cut(s)	271, 572
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	3 cut(s)	349, 905, 924
TaqI	TCGA	4 cut(s)	205, 258, 288, 555
TasI	AATT	5 cut(s)	38, 74, 589, 618, 982
TfiI	GAWTC	3 cut(s)	526, 557, 563
Tru1I	TTAA	7 cut(s)	135, 327, 617, 833, 861, 876, 1093
Tru9I	TTAA	7 cut(s)	135, 327, 617, 833, 861, 876, 1093
TscAI	CASTG	1 cut(s)	794
TspDTI	ATGAA	1 cut(s)	160
TspGWI	ACGGA	3 cut(s)	682, 1023, 1083
TspRI	CASTG	1 cut(s)	794
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	711
VspI	ATTAAT	1 cut(s)	617
XapI	RAATTY	4 cut(s)	38, 74, 589, 982
XmiI	GTMKAC	2 cut(s)	332, 598
XmnI	GAANNNNTTC	2 cut(s)	455, 813
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.