Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

18842529 .. 18843890

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G202800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCCTCTCCACCATCTCTTCCTTCGGAAATATGGTTTGATCATATTCTAACGAGAGTTAAATCGCTCGACAGCCTAGGGTTGTGTAGGGTGGTTTCAAAGGACTGGAATCACATCACATACGAGTCAAGGTTCTGGCAATTGTTTTGCAAGAGAAGTGACGCAGTGTCTGGGTTTTTAATTCAGAATTTCTACGATTACAAACACTCATCAACGTTTGTGTCTGTCGATAACAAGGCCAACAAGACTTTGAATCTCTCAATACTAAACTTCTTGCCTGCCCCTGTCAAAGTTGAAGCTGTGAGTAGCCAAGGTGGCCTAGTATTTTGTGTGAACCAAAACCATCGTAGAGTACCCGAATATTTTGTGTGCAAGCCTACCACTCTACAATGGGAAACTTTACCCAATCCAAAGACTAGGTACTACACCCAAAGTAACGCCATAGTTGTGTTGAGTTCGAAACCTTTAAGGTACAAGATTATCCGGCTTTCGGAACCCAAATCTCCAGTCAAGTATCAACTACACCAAAACCTTATAAGGTGCGAAGTGTTTGATTCAAACACTTGGGCATGGAAGCAGTTGAAACATGTTAGTTTGCCCTATTCTGTGTGCTTGAGACTCCCCCGGCGGCCTTGTGTAACATCAGGTGGTGCGTGTTATTGGCATCTGACGAGCAACCAAGTGCTTGCTTTTTATTACGAAGACGATAAAGAGAGTTGGGAAATTTTTGATTCACCAGAGCCGATGAGTGATAGTGAGTACTGTGCCATGTACACCAAACTCGTAGAGTACCAAGGTCGTCTTGCCTTGATTTACTCTGAAGGAGAGTTGATGGAGCTATGGGTCATGGAAGATCACGAGAAAAAAGTATGGAAGAGACACAAACTGATTAGTCTTGATGGGCTTAAACAACTGGTGGGGCATTATCCTTCCCCTGGAGCATATTACAACAGTGATATTGCACTAATGGAAGCGTGGCCCAAAATAATTTTTTACAAATTCCAAGGAAGTTCAAGTAACAAAGTAGTCAAGCTAGAGCATAAACCCGATGAAATTTTCAAGCTGCAGTCTGATTTTGAGATAGTTAATCTGAGGGGTCCATGGAGATGGCGAGATTTTAGTTTCATCTTCTTTCTGTTTGTATTTAGTTTGTTTTGTTATTTTGTGCGCTTTGTTTTCGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FBA_3

Protein Analysis

396

Amino Acids

46.38

Weight (kDa)

8.82

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	536, 1186
AciI	CCGC	1 cut(s)	628
AclI	AACGTT	1 cut(s)	215
AcsI	RAATTY	4 cut(s)	187, 723, 998, 1053
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	6 cut(s)	354, 422, 473, 761, 773, 791
AfiI	CCNNNNNNNGG	2 cut(s)	490, 935
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	7 cut(s)	99, 253, 296, 558, 583, 1014, 1060
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	4 cut(s)	299, 838, 1033, 1063
AluI	AGCT	4 cut(s)	299, 838, 1033, 1063
Alw26I	GTCTC	2 cut(s)	610, 871
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	5 cut(s)	3, 237, 316, 629, 977
ApeKI	GCWGC	1 cut(s)	1063
ApoI	RAATTY	4 cut(s)	187, 723, 998, 1053
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	1170
AspS9I	GGNCC	2 cut(s)	978, 1097
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	726
AsuII	TTCGAA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	1097
AvrII	CCTAGG	1 cut(s)	76
BauI	CACGAG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	708
BbvI	GCAGC	1 cut(s)	1050
BccI	CCATC	5 cut(s)	22, 351, 826, 893, 1101
BciT130I	CCWGG	1 cut(s)	936
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	610, 871
BfaI	CTAG	4 cut(s)	77, 320, 417, 1034
BfmI	CTRYAG	1 cut(s)	1064
BglI	GCCNNNNNGGC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	629, 1064
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	2 cut(s)	630, 1065
BmcAI	AGTACT	1 cut(s)	761
Bme1390I	CCNGG	2 cut(s)	625, 936
Bme18I	GGWCC	1 cut(s)	1097
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	978, 1097
BmiI	GGNNCC	2 cut(s)	495, 1098
BmrFI	CCNGG	2 cut(s)	625, 936
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	708
BpmI	CTGGAG	2 cut(s)	489, 957
Bpu14I	TTCGAA	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	625
BsaJI	CCNNGG	7 cut(s)	76, 310, 623, 793, 934, 1003, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 935
Bse1I	ACTGG	3 cut(s)	110, 506, 918
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	7 cut(s)	76, 310, 623, 793, 934, 1003, 1100
BseLI	CCNNNNNNNGG	2 cut(s)	490, 935
BseMII	CTCAG	1 cut(s)	1082
BseNI	ACTGG	3 cut(s)	110, 506, 918
BseXI	GCAGC	1 cut(s)	1050
BshFI	GGCC	5 cut(s)	5, 239, 318, 631, 979
BsiSI	CCGG	2 cut(s)	484, 625
BslI	CCNNNNNNNGG	2 cut(s)	490, 935
BsmAI	GTCTC	2 cut(s)	610, 871
BsnI	GGCC	5 cut(s)	5, 239, 318, 631, 979
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	2 cut(s)	40, 853
Bsp19I	CCATGG	1 cut(s)	1100
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	5 cut(s)	5, 239, 318, 631, 979
BspCNI	CTCAG	1 cut(s)	1083
BspLI	GGNNCC	2 cut(s)	495, 1098
BspMAI	CTGCAG	1 cut(s)	1068
BspT104I	TTCGAA	1 cut(s)	458
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	3 cut(s)	110, 506, 918
BssECI	CCNNGG	7 cut(s)	76, 310, 623, 793, 934, 1003, 1100
BssMI	GATC	2 cut(s)	40, 853
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	5 cut(s)	76, 310, 793, 1003, 1100
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	2 cut(s)	764, 953
Bst6I	CTCTTC	2 cut(s)	24, 869
BstAUI	TGTACA	1 cut(s)	771
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	279, 374, 687
BstDEI	CTNAG	1 cut(s)	1091
BstDSI	CCRYGG	1 cut(s)	1100
BstHHI	GCGC	1 cut(s)	1170
BstKTI	GATC	2 cut(s)	43, 856
BstMAI	GTCTC	2 cut(s)	610, 871
BstMBI	GATC	2 cut(s)	40, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	936
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	623, 934
BstSFI	CTRYAG	1 cut(s)	1064
BstV1I	GCAGC	1 cut(s)	1050
BstV2I	GAAGAC	1 cut(s)	708
BstXI	CCANNNNNNTGG	1 cut(s)	1107
BsuRI	GGCC	5 cut(s)	5, 239, 318, 631, 979
BtgI	CCRYGG	1 cut(s)	1100
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 958
Cac8I	GCNNGC	3 cut(s)	279, 374, 687
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	1170
Cfr13I	GGNCC	2 cut(s)	978, 1097
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	6 cut(s)	353, 421, 472, 760, 772, 790
CviAII	CATG	5 cut(s)	570, 587, 769, 847, 1101
CviQI	GTAC	6 cut(s)	353, 421, 472, 760, 772, 790
DdeI	CTNAG	1 cut(s)	1091
DpnI	GATC	2 cut(s)	42, 855
DpnII	GATC	2 cut(s)	40, 853
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	24, 869
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	2 cut(s)	24, 869
Eco130I	CCWWGG	5 cut(s)	76, 310, 793, 1003, 1100
Eco47I	GGWCC	1 cut(s)	1097
Eco57I	CTGAAG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	934
EcoT14I	CCWWGG	5 cut(s)	76, 310, 793, 1003, 1100
ErhI	CCWWGG	5 cut(s)	76, 310, 793, 1003, 1100
FaeI	CATG	5 cut(s)	573, 590, 772, 850, 1104
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	5 cut(s)	569, 586, 768, 846, 1100
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	629, 1064
Fsp4HI	GCNGC	2 cut(s)	629, 1064
FspBI	CTAG	4 cut(s)	77, 320, 417, 1034
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	2 cut(s)	629, 1064
GsuI	CTGGAG	2 cut(s)	489, 957
HaeIII	GGCC	5 cut(s)	5, 239, 318, 631, 979
HapII	CCGG	2 cut(s)	484, 625
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	1170
Hin1II	CATG	5 cut(s)	573, 590, 772, 850, 1104
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HinfI	GANTC	6 cut(s)	109, 125, 253, 554, 618, 731
HpaII	CCGG	2 cut(s)	484, 625
HphI	GGTGA	1 cut(s)	726
Hpy166II	GTNNAC	2 cut(s)	334, 774
Hpy188I	TCNGA	7 cut(s)	28, 186, 493, 669, 820, 1072, 1092
Hpy188III	TCNNGA	2 cut(s)	857, 896
Hpy8I	GTNNAC	2 cut(s)	334, 774
HpyAV	CCTTC	3 cut(s)	33, 815, 939
HpyCH4III	ACNGT	2 cut(s)	764, 953
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	150, 372, 962, 1066
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	1091
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	5 cut(s)	573, 590, 772, 850, 1104
HspAI	GCGC	1 cut(s)	1168
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	40, 853
LmnI	GCTCC	2 cut(s)	835, 938
Lsp1109I	GCAGC	1 cut(s)	1050
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	4 cut(s)	77, 320, 417, 1034
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	4 cut(s)	158, 434, 637, 1016
MalI	GATC	2 cut(s)	42, 855
MboI	GATC	2 cut(s)	40, 853
MboII	GAAGA	5 cut(s)	11, 713, 863, 886, 1120
MfeI	CAATTG	1 cut(s)	140
MluCI	AATT	7 cut(s)	140, 180, 187, 723, 987, 998, 1053
MlyI	GAGTC	2 cut(s)	134, 612
MnlI	CCTC	2 cut(s)	16, 1086
MseI	TTAA	5 cut(s)	60, 179, 467, 906, 1086
MslI	CAYNNNNRTG	2 cut(s)	446, 1105
MspI	CCGG	2 cut(s)	484, 625
MspR9I	CCNGG	2 cut(s)	625, 936
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	936
MwoI	GCNNNNNNNGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	1 cut(s)	1100
NdeII	GATC	2 cut(s)	40, 853
NlaIII	CATG	5 cut(s)	573, 590, 772, 850, 1104
NlaIV	GGNNCC	2 cut(s)	495, 1098
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	458
PciI	ACATGT	1 cut(s)	586
PfeI	GAWTC	4 cut(s)	109, 253, 554, 731
PkrI	GCNGC	2 cut(s)	630, 1065
PleI	GAGTC	2 cut(s)	133, 612
PpsI	GAGTC	2 cut(s)	133, 612
PscI	ACATGT	1 cut(s)	586
PsiI	TTATAA	2 cut(s)	536, 1186
Psp1406I	AACGTT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	2 cut(s)	495, 1098
PspPI	GGNCC	2 cut(s)	978, 1097
PstI	CTGCAG	1 cut(s)	1068
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	6 cut(s)	354, 422, 473, 761, 773, 791
RsaNI	GTAC	6 cut(s)	353, 421, 472, 760, 772, 790
RseI	CAYNNNNRTG	2 cut(s)	446, 1105
SaqAI	TTAA	5 cut(s)	60, 179, 467, 906, 1086
SatI	GCNGC	2 cut(s)	629, 1064
Sau3AI	GATC	2 cut(s)	40, 853
Sau96I	GGNCC	2 cut(s)	978, 1097
ScaI	AGTACT	1 cut(s)	761
SchI	GAGTC	2 cut(s)	134, 612
ScrFI	CCNGG	2 cut(s)	625, 936
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	1064
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	1 cut(s)	1097
SmiMI	CAYNNNNRTG	2 cut(s)	446, 1105
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	7 cut(s)	140, 180, 187, 723, 987, 998, 1053
SsiI	CCGC	1 cut(s)	628
SspI	AATATT	1 cut(s)	362
SspMI	CTAG	4 cut(s)	77, 320, 417, 1034
StyD4I	CCNGG	2 cut(s)	623, 934
StyI	CCWWGG	5 cut(s)	76, 310, 793, 1003, 1100
TaaI	ACNGT	2 cut(s)	764, 953
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	69, 228, 458
TasI	AATT	7 cut(s)	140, 180, 187, 723, 987, 998, 1053
TatI	WGTACW	2 cut(s)	759, 771
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	4 cut(s)	109, 253, 554, 731
Tru1I	TTAA	5 cut(s)	60, 179, 467, 906, 1086
Tru9I	TTAA	5 cut(s)	60, 179, 467, 906, 1086
TscAI	CASTG	2 cut(s)	171, 958
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	1063
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	1065, 1114
TspRI	CASTG	2 cut(s)	171, 958
VpaK11BI	GGWCC	1 cut(s)	1097
XapI	RAATTY	4 cut(s)	187, 723, 998, 1053
XceI	RCATGY	1 cut(s)	590
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	4 cut(s)	77, 320, 417, 1034
ZrmI	AGTACT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.