Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

1956115 .. 1959303

Gene Structure 3189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGTTCTCCGGTGATGAATCAAGACATGATCCAAGAAGTTCTTTCTTATCTCCCGGCTTCAAAAAATGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTCATGGTTTCTCAATCTCAATTTCTATAGAACCAACTATATCTCCGGATACTTCCTAGAAAGCTACAAAGGAGGATACACAATTGATACCAGTTTTGTCCATGAGAGGAGAGATTTGGAAAACAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGAGAGAAAGATCAAAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTAATGATACAGGACTAATACCTGAATACATAGTCTGCAAACCAACCACAAAACAGTATCATATCATACCAACCCCAAAATTGTGTAGCCGTGATAAGTCACTCGGTATAACGGTAACTGGATTGGAGCCTTTCCGTTTCCCAGAGTTGGTCAGATACGAAGGGAAGCTAGGTGTTATTCTTCACTGGATAAACAAAGATCAAGAAGATGTTCACGGATTATGGGTTTTAAAGAGCAGTTGTGGAAAGGCGTGGATAAAAGTGAAAGATATTAAAAGCATTGGATTAGGTCAGATTGTGTGGACTCCAAGCAACGACGACCGAGGTTACTTGGCGAACCAAGGAAGCAAGAGAAGTCGGCTCTTGAAAGAAGGCCACACAAACAACAACATTCTCCAAGTCGGCATAGTACAAGTCGGCATAGTACAAGTTTGTCGACTACAAATCTGCTTACAAGAAGTTTGCTTTTGCCTTTATGAACTACTTCAGACTACAACTCTGCTAAGGTTACAAGTCAAAAGCAAAATTCTTACTGGCCCCTCCATAACGAACATGCAACACTTCTTCTTCCCTCTAGGCTCTCTCATACATCATGCTAAGATATTGTGTCGGTATATCTACGACATTAACGTGAACGTAAACACAAACATGAAGCTTAATCTAATTTCTCTTTACACAAATCTTAGCAATGCTTTCTCAAATAAAAGATTTTACAAAATCAACTATGACGGATCAAATACGCAAATAGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_3

Protein Analysis

358

Amino Acids

41.0

Weight (kDa)

9.21

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	757
AccIII	TCCGGA	1 cut(s)	161
AclWI	GGATC	2 cut(s)	25, 1060
AcsI	RAATTY	2 cut(s)	74, 846
AcuI	CTGAAG	1 cut(s)	791
AfaI	GTAC	2 cut(s)	732, 747
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	63, 688
AluBI	AGCT	5 cut(s)	111, 180, 290, 490, 976
AluI	AGCT	5 cut(s)	111, 180, 290, 490, 976
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	2 cut(s)	25, 1060
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	694, 856
ApoI	RAATTY	2 cut(s)	74, 846
Asp700I	GAANNNNTTC	2 cut(s)	531, 804
AspS9I	GGNCC	1 cut(s)	857
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	25
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	396
BciVI	GTATCC	2 cut(s)	158, 185
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	3 cut(s)	173, 491, 896
BfmI	CTRYAG	1 cut(s)	142
BfuI	GTATCC	2 cut(s)	158, 185
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	857
BmiI	GGNNCC	3 cut(s)	83, 450, 859
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	643, 661
BsaWI	WCCGGW	2 cut(s)	10, 161
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	4 cut(s)	207, 445, 512, 859
Bse3DI	GCAATG	1 cut(s)	1015
BseAI	TCCGGA	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	643, 661
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	1015
BseNI	ACTGG	4 cut(s)	207, 445, 512, 859
BseRI	GAGGAG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	643
BshFI	GGCC	2 cut(s)	696, 858
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	11, 56, 162
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	696, 858
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	30, 282, 520, 1052
BspANI	GGCC	2 cut(s)	696, 858
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	3 cut(s)	83, 450, 859
BspPI	GGATC	2 cut(s)	25, 1060
BsrDI	GCAATG	1 cut(s)	1015
BsrI	ACTGG	4 cut(s)	207, 445, 512, 859
BssECI	CCNNGG	2 cut(s)	643, 661
BssMI	GATC	4 cut(s)	30, 282, 520, 1052
BssT1I	CCWWGG	1 cut(s)	661
Bst4CI	ACNGT	2 cut(s)	378, 436
BstDEI	CTNAG	3 cut(s)	824, 918, 1004
BstKTI	GATC	4 cut(s)	33, 285, 523, 1055
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	4 cut(s)	30, 282, 520, 1052
BstMCI	CGRYCG	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	255
BsuI	GTATCC	2 cut(s)	158, 185
BsuRI	GGCC	2 cut(s)	696, 858
BsuTUI	ATCGAT	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	857
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	731, 746
CviAII	CATG	7 cut(s)	28, 120, 218, 305, 874, 914, 970
CviQI	GTAC	2 cut(s)	731, 746
DdeI	CTNAG	3 cut(s)	824, 918, 1004
DpnI	GATC	4 cut(s)	32, 284, 522, 1054
DpnII	GATC	4 cut(s)	30, 282, 520, 1052
DraI	TTTAAA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	791
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	7 cut(s)	31, 123, 221, 308, 877, 917, 973
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	7 cut(s)	27, 119, 217, 304, 873, 913, 969
FblI	GTMKAC	1 cut(s)	757
FspBI	CTAG	3 cut(s)	173, 491, 896
HaeIII	GGCC	2 cut(s)	696, 858
HapII	CCGG	3 cut(s)	11, 56, 162
Hin1II	CATG	7 cut(s)	31, 123, 221, 308, 877, 917, 973
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HindIII	AAGCTT	2 cut(s)	288, 974
HinfI	GANTC	4 cut(s)	19, 116, 246, 625
HpaII	CCGG	3 cut(s)	11, 56, 162
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	5 cut(s)	535, 624, 758, 955, 961
Hpy188I	TCNGA	3 cut(s)	476, 615, 810
Hpy188III	TCNNGA	5 cut(s)	23, 85, 162, 524, 685
Hpy8I	GTNNAC	5 cut(s)	535, 624, 758, 955, 961
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	2 cut(s)	476, 686
HpyCH4III	ACNGT	2 cut(s)	378, 436
HpyCH4IV	ACGT	2 cut(s)	951, 957
HpyCH4V	TGCA	4 cut(s)	99, 299, 360, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	3 cut(s)	824, 918, 1004
HpySE526I	ACGT	2 cut(s)	951, 957
Hsp92II	CATG	7 cut(s)	31, 123, 221, 308, 877, 917, 973
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	30, 282, 520, 1052
LmnI	GCTCC	2 cut(s)	87, 448
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	173, 491, 896
MaeII	ACGT	2 cut(s)	951, 957
MaeIII	GTNAC	4 cut(s)	420, 436, 647, 828
MalI	GATC	4 cut(s)	32, 284, 522, 1054
MboI	GATC	4 cut(s)	30, 282, 520, 1052
MboII	GAAGA	4 cut(s)	494, 539, 877, 880
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	6 cut(s)	74, 136, 198, 401, 846, 984
MlyI	GAGTC	3 cut(s)	125, 255, 619
MnlI	CCTC	5 cut(s)	182, 216, 638, 871, 903
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	2 cut(s)	531, 804
MseI	TTAA	5 cut(s)	324, 551, 594, 948, 978
MslI	CAYNNNNRTG	2 cut(s)	950, 968
MspI	CCGG	3 cut(s)	11, 56, 162
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	30, 282, 520, 1052
NlaIII	CATG	7 cut(s)	31, 123, 221, 308, 877, 917, 973
NlaIV	GGNNCC	3 cut(s)	83, 450, 859
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	948
PdmI	GAANNNNTTC	2 cut(s)	531, 804
PfeI	GAWTC	1 cut(s)	19
PleI	GAGTC	3 cut(s)	124, 254, 619
PpsI	GAGTC	3 cut(s)	124, 254, 619
PspN4I	GGNNCC	3 cut(s)	83, 450, 859
PspPI	GGNCC	1 cut(s)	857
RsaI	GTAC	2 cut(s)	732, 747
RsaNI	GTAC	2 cut(s)	731, 746
RseI	CAYNNNNRTG	2 cut(s)	950, 968
SalI	GTCGAC	1 cut(s)	756
SaqAI	TTAA	5 cut(s)	324, 551, 594, 948, 978
Sau3AI	GATC	4 cut(s)	30, 282, 520, 1052
Sau96I	GGNCC	1 cut(s)	857
SchI	GAGTC	3 cut(s)	125, 255, 619
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	950, 968
Sse9I	AATT	6 cut(s)	74, 136, 198, 401, 846, 984
SspMI	CTAG	3 cut(s)	173, 491, 896
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	2 cut(s)	378, 436
TaiI	ACGT	2 cut(s)	954, 960
TaqI	TCGA	2 cut(s)	255, 757
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	6 cut(s)	74, 136, 198, 401, 846, 984
TatI	WGTACW	2 cut(s)	730, 745
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	5 cut(s)	324, 551, 594, 948, 978
Tru9I	TTAA	5 cut(s)	324, 551, 594, 948, 978
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	3 cut(s)	32, 813, 986
TspGWI	ACGGA	3 cut(s)	446, 552, 1065
TspRI	CASTG	1 cut(s)	512
XapI	RAATTY	2 cut(s)	74, 846
XceI	RCATGY	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	757
XmnI	GAANNNNTTC	2 cut(s)	531, 804
XspI	CTAG	3 cut(s)	173, 491, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.