Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

23859554 .. 23860624

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64295.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAGTTCTCCGGTGATAAATCAGGACACGATCCAAGAGGTTCTTTCTTATCTTCGGGGGTCCGAAATCGGAAAATTGAGGCTCATCAATAAAGAGTGCAACAAGAGAAGCTACGAGTCTTGGTTTGTCAACCTAAATCTCCATCGAACCAACAATATCTCTGGATACTTCCTAGAACGCTACGAAAGAGGATACAAACTTGATACCAGTTTTTTCCATGAGAGGAGAGATTTGGATAACAAAGGAGTCTCCATCGATTTTCTGCCACAAGGAGAGGTAAAGATCAAAGCTTGTGATGCACGTCATGGGATATTGCTTTGTTATAATGATACAAGACCAATACCGGAATACATAGTCTGCAAACCAACAACAAAACAGTATCAGATCATACCAAACCCAAAAGTGAGGAGTTGTGATAAGTCATTAGGTCTAACGGTAACCGGATTGCAGCCTTTCCGGTATAAAATATTTAGGCTTTCGAAATCGCCTGGTATGACTCGGAATCTCAGAACTTTTGCGTGCGAAGTTTTTGATTCCGATTCGTTTATGTGGAAGAGATTAAAAAATTTGCGTCTACCGAGAACAGACGGTCTAATTCTTTCAAACCCGGTACAAGCTTCAGGGTTCTTGCATTGGAGATCATGGAACCACAATGTGATCCGGTTATGTCCCAAAACCGAAACTTGGTCTTTCTTACATACTCCAAACGTTGGTTTATTCCCAGAGTTAGTCAGCTACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAACAATCAAGAAGATGTTCACAGATTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATATTGAAAGCATTGGAGTAGAGCATATTACGTGGATACCAAGCAACGACGTCGTAATGCTTTCTAGTTGGGATCATGTTTGCCTCTACAACTTAAACACAGAGAAGTTAAACTTAGTTCATACAAACAAGGATTTTGCCTCTTACGTTTGTTTCCCCTTTTGTTCTGATTACGAGAGGGTTGATCTGGACGGAAGAAGAAATGGACCGACAAATGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_3

Protein Analysis

356

Amino Acids

41.57

Weight (kDa)

8.98

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	93 - 281	2e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AatII	GACGTC	1 cut(s)	900
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	574
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	3 cut(s)	25, 652, 927
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	897
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	2 cut(s)	684, 710
AgsI	TTSAA	3 cut(s)	603, 824, 854
AjiI	CACGTC	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	5 cut(s)	111, 290, 617, 735, 748
AluI	AGCT	5 cut(s)	111, 290, 617, 735, 748
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	3 cut(s)	25, 652, 927
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	60, 1052
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	60, 1052
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	2 cut(s)	150, 260
BcgI	CGANNNNNNTGC	2 cut(s)	880, 914
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	3 cut(s)	158, 185, 876
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	4 cut(s)	173, 749, 912, 1069
BfuI	GTATCC	3 cut(s)	158, 185, 876
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	2 cut(s)	489, 608
Bme18I	GGWCC	2 cut(s)	60, 1052
BmgBI	CACGTC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	60, 1052
BmiI	GGNNCC	2 cut(s)	61, 647
BmrFI	CCNGG	2 cut(s)	489, 608
BmsI	GCATC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	879
BsaHI	GRCGYC	1 cut(s)	897
BsaWI	WCCGGW	5 cut(s)	10, 343, 440, 456, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	684, 710
Bse1I	ACTGG	2 cut(s)	207, 770
BseBI	CCWGG	1 cut(s)	489
BseCI	ATCGAT	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	684, 710
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	2 cut(s)	207, 770
BseRI	GAGGAG	2 cut(s)	238, 421
BseXI	GCAGC	1 cut(s)	460
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	6 cut(s)	11, 344, 441, 457, 608, 661
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	2 cut(s)	684, 710
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	479
Bsp143I	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
BspCNI	CTCAG	1 cut(s)	519
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	61, 647
BspPI	GGATC	3 cut(s)	25, 652, 927
BspT104I	TTCGAA	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	207, 770
BssMI	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
BssNI	GRCGYC	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	378, 436, 590
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	897
BstBAI	YACGTR	1 cut(s)	879
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	506, 961
BstEII	GGTNACC	1 cut(s)	436
BstKTI	GATC	7 cut(s)	33, 285, 387, 641, 660, 922, 1033
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	487, 606
BstV1I	GCAGC	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	255
BsuI	GTATCC	3 cut(s)	158, 185, 876
BsuTUI	ATCGAT	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	763
Cac8I	GCNNGC	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	60, 1052
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	4 cut(s)	218, 305, 642, 923
CviJI	RGCY	8 cut(s)	82, 111, 290, 451, 475, 617, 735, 748
CviKI_1	RGCY	8 cut(s)	82, 111, 290, 451, 475, 617, 735, 748
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	2 cut(s)	506, 961
DpnI	GATC	7 cut(s)	32, 284, 386, 640, 659, 921, 1032
DpnII	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
DraI	TTTAAA	1 cut(s)	810
DraIII	CACNNNGTG	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	60, 1052
Eco57I	CTGAAG	1 cut(s)	603
Eco91I	GGTNACC	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	4 cut(s)	221, 308, 645, 926
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 944, 976
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	4 cut(s)	217, 304, 641, 922
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	4 cut(s)	173, 749, 912, 1069
GluI	GCNGC	1 cut(s)	449
HapII	CCGG	6 cut(s)	11, 344, 441, 457, 608, 661
HgaI	GACGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	897
Hin1II	CATG	4 cut(s)	221, 308, 645, 926
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	288, 615
HinfI	GANTC	6 cut(s)	116, 246, 496, 502, 533, 539
HpaII	CCGG	6 cut(s)	11, 344, 441, 457, 608, 661
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	130, 575, 793
Hpy188I	TCNGA	7 cut(s)	64, 71, 384, 501, 509, 538, 1015
Hpy188III	TCNNGA	4 cut(s)	23, 162, 782, 1034
Hpy8I	GTNNAC	3 cut(s)	130, 575, 793
Hpy99I	CGWCG	2 cut(s)	899, 902
HpyAV	CCTTC	1 cut(s)	734
HpyCH4III	ACNGT	3 cut(s)	378, 436, 590
HpyCH4IV	ACGT	5 cut(s)	301, 708, 878, 897, 993
HpyCH4V	TGCA	6 cut(s)	99, 299, 360, 448, 631, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	506, 961
HpySE526I	ACGT	5 cut(s)	301, 708, 878, 897, 993
Hsp92I	GRCGYC	1 cut(s)	897
Hsp92II	CATG	4 cut(s)	221, 308, 645, 926
Kzo9I	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	4 cut(s)	173, 749, 912, 1069
MaeII	ACGT	5 cut(s)	301, 708, 878, 897, 993
MaeIII	GTNAC	2 cut(s)	436, 761
MalI	GATC	7 cut(s)	32, 284, 386, 640, 659, 921, 1032
MboI	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
MboII	GAAGA	5 cut(s)	44, 565, 797, 1053, 1056
MluCI	AATT	3 cut(s)	74, 565, 594
MlyI	GAGTC	3 cut(s)	125, 255, 490
MnlI	CCTC	9 cut(s)	31, 72, 182, 216, 268, 399, 941, 997, 1017
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	4 cut(s)	560, 809, 941, 956
MspI	CCGG	6 cut(s)	11, 344, 441, 457, 608, 661
MspR9I	CCNGG	2 cut(s)	489, 608
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	608
NdeII	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
NlaIII	CATG	4 cut(s)	221, 308, 645, 926
NlaIV	GGNNCC	2 cut(s)	61, 647
NmuCI	GTSAC	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	3 cut(s)	502, 533, 539
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	3 cut(s)	124, 254, 490
PpsI	GAGTC	3 cut(s)	124, 254, 490
Ppu21I	YACGTR	1 cut(s)	879
PsiI	TTATAA	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	487
PspEI	GGTNACC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	61, 647
PspPI	GGNCC	2 cut(s)	60, 1052
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	560, 809, 941, 956
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	7 cut(s)	30, 282, 384, 638, 657, 919, 1030
Sau96I	GGNCC	2 cut(s)	60, 1052
SchI	GAGTC	3 cut(s)	125, 255, 490
ScrFI	CCNGG	2 cut(s)	489, 608
SfaNI	GCATC	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	2 cut(s)	60, 1052
Sse9I	AATT	3 cut(s)	74, 565, 594
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	4 cut(s)	173, 749, 912, 1069
StyD4I	CCNGG	2 cut(s)	487, 606
TaaI	ACNGT	3 cut(s)	378, 436, 590
TaiI	ACGT	5 cut(s)	304, 711, 881, 900, 996
TaqI	TCGA	3 cut(s)	145, 255, 479
TaqII	GACCGA	1 cut(s)	1069
TasI	AATT	3 cut(s)	74, 565, 594
TfiI	GAWTC	3 cut(s)	502, 533, 539
Tru1I	TTAA	4 cut(s)	560, 809, 941, 956
Tru9I	TTAA	4 cut(s)	560, 809, 941, 956
TscAI	CASTG	1 cut(s)	770
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	1 cut(s)	956
TspGWI	ACGGA	1 cut(s)	1053
TspRI	CASTG	1 cut(s)	770
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	60, 1052
XapI	RAATTY	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	4 cut(s)	173, 749, 912, 1069
ZraI	GACGTC	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.