Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Forward (+)

4325227 .. 4326832

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTTTAGTAAAAAAATTGCCAGATGACGCAGTCTTTGAGATTCTAACAAGATCATCCTTGGAAACTCTAGGGCGTTGCAGATCGATTTCAAAGGAGTGGAATAGGGTCACATACGAATCAACCTTCCATCAATTGCTTTGCCAGAGGAGTAACATAGTTTCTGGATTTTTCATTCAGAGCCTAGTTAACTCCCAACTCTCATCCACATTTGTGTCGCTGGACACTGATGCCAGCTCCACTTCTGCACTGTCTTTGGATTTTCTAAAAGTTCCTGTCCAGATTGAAGCTGCAAATCAAGGCCTACTAGTGTGTGTCAACCAGAACAACAGGTATTTGGTATGTAAGCCTACTACGAAACAATGGGTAAAGATACCGAATCCGAAAACTAAGTACCCTACTGCAAGCACTGCCCTGCTGGTGTTGAAGTCAAATCCTTTGAAGTACAAGATTATTCGATTCTCGCAAGCAAAGAAACCTGTCAAGCGTAAATCTGAATTTTGGCGCCATGTTAGGTGCGAGATATTTAATTCAACAACATGGGCATGGAAGAGGTTAAAGGATGTGATTCTACCTTGTAAGACTTTCTTTGCGAATAAAGAAGATTCTGTTGTAGCAGCAAATGGTGGTCTGCATTGGCTTCTGTCAGATAACCAAGTATTTGCTTTCTATGAAGATGCAGAGAATTGGGAAATGTTCTCATTGCCACCCTCCGCAGTCGATAATGGAGGTCACAAATCCAAGCCACTACTTGCGGAGTACCAAGGTCGGCTTGCAGTGATTCGAAGTGGAGAAGAATTCATGGACATGTGGGTGATGGAAGATTATGGCAGAAAGTTATGGAGTGCGACGCGGGCATGGAACATCAAAAAACTCTGTGGAGAAGAAATCTATCCTTCTCCATTAGCTTTCCATAATGGTGACGCTGCACTTTTTATGGCAGCTTTTGACAAAGTCATGTTTTATAATTTTCAGGAGGGAAAATCTCATAAAATAAGATTACAATATCACCCTCATCAAATTTTCAAGTTCCAGTCGGACATGGAGGAGGTTAATCTAGAGAGACCTGATCGTGTTTTGAAACTTCAGGCGAAATCAGAGGAGGTTAACATGGAGAACCATCCTGAAGATATCAGAGGTCTTACAAAGTTCCTGCTTCCACTTAAGGGTTTTAAACCCTATTTGTTTCTCCTCTTAGCGCCTATGCTTGGTGTCTTATACAGGTGCTGTTCTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

414

Amino Acids

47.46

Weight (kDa)

9.09

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	85 - 343	7.6e-14	F-box associated beta propeller domain
FBA_1	PF07734	92 - 330	7e-14	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	96 - 308	1.3e-10	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
AccB1I	GGYRCC	1 cut(s)	504
AccII	CGCG	1 cut(s)	853
AciI	CCGC	3 cut(s)	714, 755, 853
AcsI	RAATTY	3 cut(s)	497, 797, 1020
AcuI	CTGAAG	2 cut(s)	1070, 1146
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	3 cut(s)	395, 446, 761
AfiI	CCNNNNNNNGG	2 cut(s)	1166, 1208
AflII	CTTAAG	1 cut(s)	1163
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	7 cut(s)	93, 287, 427, 442, 534, 1027, 1081
AhlI	ACTAGT	1 cut(s)	307
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	4 cut(s)	237, 290, 908, 944
AluI	AGCT	4 cut(s)	237, 290, 908, 944
Alw26I	GTCTC	1 cut(s)	1057
AlwNI	CAGNNNCTG	1 cut(s)	1227
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	290, 617, 926, 941
ApoI	RAATTY	3 cut(s)	497, 797, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AspLEI	GCGC	2 cut(s)	507, 1201
AsuHPI	GGTGA	3 cut(s)	826, 932, 1001
AsuII	TTCGAA	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	504
BbvI	GCAGC	4 cut(s)	277, 629, 913, 953
BccI	CCATC	3 cut(s)	138, 811, 1128
BcoDI	GTCTC	1 cut(s)	1057
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	4 cut(s)	71, 185, 308, 1058
BfoI	RGCGCY	2 cut(s)	508, 1202
BfrI	CTTAAG	1 cut(s)	1163
BisI	GCNGC	4 cut(s)	291, 618, 927, 942
BlsI	GCNGC	4 cut(s)	292, 619, 928, 943
BmiI	GGNNCC	1 cut(s)	506
BmsI	GCATC	3 cut(s)	220, 667, 1225
Bpu14I	TTCGAA	1 cut(s)	784
Bsa29I	ATCGAT	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	505
BsaI	GGTCTC	1 cut(s)	1057
BsaJI	CCNNGG	2 cut(s)	60, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	1166, 1208
Bse1I	ACTGG	1 cut(s)	1033
Bse3DI	GCAATG	1 cut(s)	701
BseCI	ATCGAT	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	60, 763
BseGI	GGATG	4 cut(s)	56, 203, 568, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	1166, 1208
BseMI	GCAATG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	1033
BseRI	GAGGAG	4 cut(s)	163, 1061, 1115, 1181
BseXI	GCAGC	4 cut(s)	277, 629, 913, 953
BsgI	GTGCAG	2 cut(s)	231, 912
Bsh1236I	CGCG	1 cut(s)	853
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	504
BshVI	ATCGAT	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	1166, 1208
BsmAI	GTCTC	1 cut(s)	1057
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	1057
Bsp119I	TTCGAA	1 cut(s)	784
Bsp143I	GATC	3 cut(s)	53, 83, 1069
BspACI	CCGC	3 cut(s)	714, 755, 853
BspANI	GGCC	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	853
BspLI	GGNNCC	1 cut(s)	506
BspT104I	TTCGAA	1 cut(s)	784
BspT107I	GGYRCC	1 cut(s)	504
BspTI	CTTAAG	1 cut(s)	1163
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	1033
BssECI	CCNNGG	2 cut(s)	60, 763
BssMI	GATC	3 cut(s)	53, 83, 1069
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	60, 763
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	505
BstAFI	CTTAAG	1 cut(s)	1163
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	5 cut(s)	235, 406, 468, 774, 855
BstDEI	CTNAG	2 cut(s)	390, 1195
BstF5I	GGATG	4 cut(s)	56, 203, 568, 1120
BstFNI	CGCG	1 cut(s)	853
BstH2I	RGCGCY	2 cut(s)	508, 1202
BstHHI	GCGC	2 cut(s)	507, 1201
BstKTI	GATC	3 cut(s)	56, 86, 1072
BstMAI	GTCTC	1 cut(s)	1057
BstMBI	GATC	3 cut(s)	53, 83, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 854
BstNSI	RCATGY	1 cut(s)	811
BstUI	CGCG	1 cut(s)	853
BstV1I	GCAGC	4 cut(s)	277, 629, 913, 953
Bsu15I	ATCGAT	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	86
BtsCI	GGATG	4 cut(s)	56, 203, 568, 1120
BtsI	GCAGTG	2 cut(s)	408, 783
BtsIMutI	CAGTG	4 cut(s)	225, 248, 408, 783
Cac8I	GCNNGC	5 cut(s)	235, 406, 468, 774, 855
CaiI	CAGNNNCTG	1 cut(s)	1227
CfoI	GCGC	2 cut(s)	507, 1201
ClaI	ATCGAT	1 cut(s)	86
CseI	GACGC	3 cut(s)	38, 859, 932
Csp6I	GTAC	3 cut(s)	394, 445, 760
CviAII	CATG	9 cut(s)	509, 540, 546, 802, 808, 858, 958, 1042, 1111
CviQI	GTAC	3 cut(s)	394, 445, 760
DdeI	CTNAG	2 cut(s)	390, 1195
DinI	GGCGCC	1 cut(s)	506
DpnI	GATC	3 cut(s)	55, 85, 1071
DpnII	GATC	3 cut(s)	53, 83, 1069
DraI	TTTAAA	1 cut(s)	1174
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	60, 763
Eco147I	AGGCCT	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	1057
Eco32I	GATATC	1 cut(s)	1132
Eco57I	CTGAAG	2 cut(s)	1070, 1146
EcoRI	GAATTC	1 cut(s)	797
EcoRV	GATATC	1 cut(s)	1132
EcoT14I	CCWWGG	2 cut(s)	60, 763
EcoT22I	ATGCAT	1 cut(s)	1240
EgeI	GGCGCC	1 cut(s)	506
EheI	GGCGCC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	60, 763
FaeI	CATG	9 cut(s)	512, 543, 549, 805, 811, 861, 961, 1045, 1114
FalI	AAGNNNNNCTT	4 cut(s)	572, 604, 756, 788
FatI	CATG	9 cut(s)	508, 539, 545, 801, 807, 857, 957, 1041, 1110
FauI	CCCGC	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	291, 618, 927, 942
FokI	GGATG	4 cut(s)	43, 190, 575, 1107
Fsp4HI	GCNGC	4 cut(s)	291, 618, 927, 942
FspBI	CTAG	4 cut(s)	71, 185, 308, 1058
GlaI	GCGC	2 cut(s)	506, 1200
GluI	GCNGC	4 cut(s)	291, 618, 927, 942
HaeII	RGCGCY	2 cut(s)	508, 1202
HaeIII	GGCC	1 cut(s)	303
HgaI	GACGC	3 cut(s)	38, 859, 932
HhaI	GCGC	2 cut(s)	507, 1201
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	9 cut(s)	512, 543, 549, 805, 811, 861, 961, 1045, 1114
Hin6I	GCGC	2 cut(s)	505, 1199
HinP1I	GCGC	2 cut(s)	505, 1199
HincII	GTYRAC	3 cut(s)	190, 319, 1108
HindII	GTYRAC	3 cut(s)	190, 319, 1108
HinfI	GANTC	7 cut(s)	43, 119, 379, 459, 568, 605, 781
HpaI	GTTAAC	2 cut(s)	190, 1108
HphI	GGTGA	3 cut(s)	826, 932, 1001
Hpy166II	GTNNAC	3 cut(s)	190, 319, 1108
Hpy188I	TCNGA	8 cut(s)	180, 384, 496, 649, 1039, 1099, 1136, 1234
Hpy188III	TCNNGA	5 cut(s)	165, 280, 974, 1058, 1124
Hpy8I	GTNNAC	3 cut(s)	190, 319, 1108
Hpy99I	CGWCG	1 cut(s)	853
HpyAV	CCTTC	2 cut(s)	136, 906
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	9 cut(s)	81, 248, 293, 404, 634, 680, 776, 929, 1238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 854
HpyF3I	CTNAG	2 cut(s)	390, 1195
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	9 cut(s)	512, 543, 549, 805, 811, 861, 961, 1045, 1114
HspAI	GCGC	2 cut(s)	505, 1199
KasI	GGCGCC	1 cut(s)	504
KspAI	GTTAAC	2 cut(s)	190, 1108
Kzo9I	GATC	3 cut(s)	53, 83, 1069
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	4 cut(s)	277, 629, 913, 953
LweI	GCATC	3 cut(s)	220, 667, 1225
MaeI	CTAG	4 cut(s)	71, 185, 308, 1058
MaeIII	GTNAC	4 cut(s)	109, 152, 731, 920
MalI	GATC	3 cut(s)	55, 85, 1071
MboI	GATC	3 cut(s)	53, 83, 1069
MboII	GAAGA	7 cut(s)	562, 614, 686, 806, 833, 896, 1139
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	8 cut(s)	17, 134, 497, 529, 685, 797, 967, 1020
Mly113I	GGCGCC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	1017
Mph1103I	ATGCAT	1 cut(s)	1240
MseI	TTAA	7 cut(s)	189, 528, 557, 1053, 1107, 1164, 1173
MslI	CAYNNNNRTG	5 cut(s)	212, 544, 806, 812, 918
MspCI	CTTAAG	1 cut(s)	1163
MunI	CAATTG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	853
MwoI	GCNNNNNNNGC	2 cut(s)	410, 854
NarI	GGCGCC	1 cut(s)	505
NdeII	GATC	3 cut(s)	53, 83, 1069
NlaIII	CATG	9 cut(s)	512, 543, 549, 805, 811, 861, 961, 1045, 1114
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	3 cut(s)	109, 731, 920
NsiI	ATGCAT	1 cut(s)	1240
NspI	RCATGY	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	784
OliI	CACNNNNGTG	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	303
PciI	ACATGT	1 cut(s)	807
PfeI	GAWTC	7 cut(s)	43, 119, 379, 459, 568, 605, 781
PflFI	GACNNNGTC	2 cut(s)	32, 953
PkrI	GCNGC	4 cut(s)	292, 619, 928, 943
PluTI	GGCGCC	1 cut(s)	508
PscI	ACATGT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	966
PspN4I	GGNNCC	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	1227
PsyI	GACNNNGTC	2 cut(s)	32, 953
RsaI	GTAC	3 cut(s)	395, 446, 761
RsaNI	GTAC	3 cut(s)	394, 445, 760
RseI	CAYNNNNRTG	5 cut(s)	212, 544, 806, 812, 918
SaqAI	TTAA	7 cut(s)	189, 528, 557, 1053, 1107, 1164, 1173
SatI	GCNGC	4 cut(s)	291, 618, 927, 942
Sau3AI	GATC	3 cut(s)	53, 83, 1069
SfaNI	GCATC	3 cut(s)	220, 667, 1225
SfoI	GGCGCC	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	784
SmiMI	CAYNNNNRTG	5 cut(s)	212, 544, 806, 812, 918
SmlI	CTYRAG	1 cut(s)	1163
SmoI	CTYRAG	1 cut(s)	1163
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	8 cut(s)	17, 134, 497, 529, 685, 797, 967, 1020
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	3 cut(s)	714, 755, 853
SspDI	GGCGCC	1 cut(s)	504
SspMI	CTAG	4 cut(s)	71, 185, 308, 1058
StuI	AGGCCT	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	60, 763
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	4 cut(s)	86, 457, 720, 784
TasI	AATT	8 cut(s)	17, 134, 497, 529, 685, 797, 967, 1020
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	7 cut(s)	43, 119, 379, 459, 568, 605, 781
Tru1I	TTAA	7 cut(s)	189, 528, 557, 1053, 1107, 1164, 1173
Tru9I	TTAA	7 cut(s)	189, 528, 557, 1053, 1107, 1164, 1173
TscAI	CASTG	4 cut(s)	232, 255, 415, 783
TseFI	GTSAC	3 cut(s)	109, 731, 920
TseI	GCWGC	4 cut(s)	290, 617, 926, 941
Tsp45I	GTSAC	3 cut(s)	109, 731, 920
TspDTI	ATGAA	3 cut(s)	163, 687, 790
TspRI	CASTG	4 cut(s)	232, 255, 415, 783
Tth111I	GACNNNGTC	2 cut(s)	32, 953
Vha464I	CTTAAG	1 cut(s)	1163
XapI	RAATTY	3 cut(s)	497, 797, 1020
XbaI	TCTAGA	1 cut(s)	1057
XceI	RCATGY	1 cut(s)	811
XspI	CTAG	4 cut(s)	71, 185, 308, 1058
Zsp2I	ATGCAT	1 cut(s)	1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.