Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Forward (+)

6888235 .. 6888940

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCGACTCCAAAAACCAAGTACGAGACTGCAAGCAGTGCGCTGCTCGTGTTGAAGTCGAAGCCTTTGAAATACAAGGTGATTCGATTCTCGGAACCCAAGGTATTAGTCAAGCACAACTCTGAATGGTGGCGCCATTTTAGGTGCGAGATTTTTGATTCAGTCACATGGGCATGGAAGCGGTCAAAGGATGTGATTCTACCTTCTAATGTTTTCTTTGCAAGTGAACAAAATTCTGTTGTGGCAGCAAATGGTGGTCTGCATTGGCTTCTGTCAAGTTACAACTCCAAGATACTACTTGTGGAGTACAAAGGTCAGCTTCCGTTGATTCAGAGTGGAGAAGAATTCATGGACATGTGGGTGATGGAAAATTATGCCAGAAAGTCATGGAGCCAGAGGCGGCCATGGAACATCAACAAACTCAGGGGAGAAGAAACCTACTATATTTCTCCATTAGCTTTCCATAATGGTGACACTGCACTTATGGAAGGTTTTCACAAAGTCATCTTCCATAACTTTCAAGAGAGAAAATCTCATCAAATAAGATTAGAGCATCCCCCTAGTCGTATTTTCAAGTTCCAGTCTGACATGGAGGAGGTCAATATATCTGATTGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

207

Amino Acids

24.4

Weight (kDa)

9.34

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	95 - 191	4.5e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	2 cut(s)	181, 400
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	232, 344
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	2 cut(s)	23, 308
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	4 cut(s)	55, 70, 521, 574
AluBI	AGCT	2 cut(s)	319, 458
AluI	AGCT	2 cut(s)	319, 458
Alw26I	GTCTC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	43, 245
ApoI	RAATTY	2 cut(s)	232, 344
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	43, 135
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	91, 373, 482
AvaII	GGWCC	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	30, 257
BccI	CCATC	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	3 cut(s)	44, 246, 401
BlsI	GCNGC	3 cut(s)	45, 247, 402
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	3 cut(s)	96, 134, 392
BmsI	GCATC	1 cut(s)	562
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	99, 404
Bse1I	ACTGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	99, 404
BseGI	GGATG	2 cut(s)	196, 553
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	30, 257
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	403
BshNI	GGYRCC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	403
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	2 cut(s)	181, 400
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	435
BspLI	GGNNCC	3 cut(s)	96, 134, 392
BspT107I	GGYRCC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	99, 404
BssNI	GRCGYC	1 cut(s)	133
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	99, 404
Bst2BI	CACGAG	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	196, 553
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	43, 135
BstMAI	GTCTC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	30, 257
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	196, 553
BtsI	GCAGTG	2 cut(s)	43, 474
BtsIMutI	CAGTG	2 cut(s)	43, 474
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	43, 135
Cfr13I	GGNCC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	22, 307
CviAII	CATG	7 cut(s)	168, 174, 349, 355, 387, 405, 589
CviJI	RGCY	6 cut(s)	64, 268, 319, 393, 403, 458
CviKI_1	RGCY	6 cut(s)	64, 268, 319, 393, 403, 458
CviQI	GTAC	2 cut(s)	22, 307
DdeI	CTNAG	1 cut(s)	422
DinI	GGCGCC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	401
Eco130I	CCWWGG	2 cut(s)	99, 404
Eco47I	GGWCC	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	99, 404
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
ErhI	CCWWGG	2 cut(s)	99, 404
FaeI	CATG	7 cut(s)	171, 177, 352, 358, 390, 408, 592
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	7 cut(s)	167, 173, 348, 354, 386, 404, 588
Fnu4HI	GCNGC	3 cut(s)	44, 246, 401
FokI	GGATG	2 cut(s)	203, 540
Fsp4HI	GCNGC	3 cut(s)	44, 246, 401
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	2 cut(s)	42, 134
GluI	GCNGC	3 cut(s)	44, 246, 401
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	403
HhaI	GCGC	2 cut(s)	43, 135
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	7 cut(s)	171, 177, 352, 358, 390, 408, 592
Hin6I	GCGC	2 cut(s)	41, 133
HinP1I	GCGC	2 cut(s)	41, 133
HinfI	GANTC	6 cut(s)	7, 82, 87, 158, 196, 328
HphI	GGTGA	3 cut(s)	91, 373, 482
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	5 cut(s)	94, 124, 333, 586, 610
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	213, 482
HpyCH4V	TGCA	4 cut(s)	32, 221, 262, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	422
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	7 cut(s)	171, 177, 352, 358, 390, 408, 592
HspAI	GCGC	2 cut(s)	41, 133
KasI	GGCGCC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	4 cut(s)	391, 407, 409, 593
Lsp1109I	GCAGC	2 cut(s)	30, 257
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	163, 278, 470
MboII	GAAGA	3 cut(s)	353, 443, 499
MluCI	AATT	3 cut(s)	232, 344, 370
Mly113I	GGCGCC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	390, 586, 589
MroXI	GAANNNNTTC	1 cut(s)	492
MslI	CAYNNNNRTG	4 cut(s)	172, 353, 359, 468
MwoI	GCNNNNNNNGC	1 cut(s)	38
NarI	GGCGCC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	404
NlaIII	CATG	7 cut(s)	171, 177, 352, 358, 390, 408, 592
NlaIV	GGNNCC	3 cut(s)	96, 134, 392
NmuCI	GTSAC	2 cut(s)	163, 470
NspI	RCATGY	1 cut(s)	358
PciI	ACATGT	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	5 cut(s)	82, 87, 158, 196, 328
PkrI	GCNGC	3 cut(s)	45, 247, 402
PluTI	GGCGCC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	96, 134, 392
PspPI	GGNCC	1 cut(s)	615
RsaI	GTAC	2 cut(s)	23, 308
RsaNI	GTAC	2 cut(s)	22, 307
RseI	CAYNNNNRTG	4 cut(s)	172, 353, 359, 468
SatI	GCNGC	3 cut(s)	44, 246, 401
Sau96I	GGNCC	1 cut(s)	615
SfaNI	GCATC	1 cut(s)	562
SfoI	GGCGCC	1 cut(s)	134
SinI	GGWCC	1 cut(s)	615
SmiMI	CAYNNNNRTG	4 cut(s)	172, 353, 359, 468
Sse9I	AATT	3 cut(s)	232, 344, 370
SsiI	CCGC	2 cut(s)	181, 400
SspDI	GGCGCC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	561
StyI	CCWWGG	2 cut(s)	99, 404
TaqI	TCGA	2 cut(s)	59, 85
TasI	AATT	3 cut(s)	232, 344, 370
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	5 cut(s)	82, 87, 158, 196, 328
TscAI	CASTG	2 cut(s)	43, 481
TseFI	GTSAC	2 cut(s)	163, 470
TseI	GCWGC	2 cut(s)	43, 245
Tsp45I	GTSAC	2 cut(s)	163, 470
TspDTI	ATGAA	1 cut(s)	337
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	43, 481
VpaK11BI	GGWCC	1 cut(s)	615
XapI	RAATTY	2 cut(s)	232, 344
XceI	RCATGY	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.