Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Forward (+)

8438441 .. 8439403

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCGGTATGTGAATTCTATTACTAAGGTGTTTCTTAGTTTTCTTAGTTTCTCTAGAGTGCTTCGCCGGATTAGGAGGGTCCAGATCGGTGGAACGTGGTCGGAGCATGCTAGGTCGTGCTGTGTCCGTGGTAGCGTGGCTTGTTGGTCGTGCTTTTACATGGCAAGACAAGGATGGAAGGATGATGTTGGGGATGTGCTTTTCCATAGCGGTGCGGATCTGTTTCTATCCAGATCGATCCGATCTGGTTTGGATCTCTTCGATCTGACCTGGGTATGGATTTATTTGGCTAGTCTGGTGTGGTTCCATGGTGCGGACAGGAGGATGGCATCCTGTGGATGGCGGCGGTCAGTAGGAGATGTTGTGGATTGGTCGGCGATGTTGGTTGACGGCGGTTGGGGTCTGACAGAGGTGGCGGCGAGGTGGGTTTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

9.33

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	4, 210, 215, 314, 343, 346, 393, 416
AclWI	GGATC	3 cut(s)	225, 232, 261
AcsI	RAATTY	1 cut(s)	13
AfiI	CCNNNNNNNGG	3 cut(s)	276, 313, 339
AjnI	CCWGG	1 cut(s)	269
AlwI	GGATC	3 cut(s)	225, 232, 261
ApoI	RAATTY	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	79
BccI	CCATC	3 cut(s)	168, 319, 333
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	271
BfaI	CTAG	3 cut(s)	54, 111, 291
BisI	GCNGC	2 cut(s)	344, 417
BlsI	GCNGC	2 cut(s)	345, 418
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	80, 305
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	127, 270, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 313, 339
BseBI	CCWGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	127, 270, 307
BseGI	GGATG	6 cut(s)	179, 187, 199, 329, 330, 344
BseLI	CCNNNNNNNGG	3 cut(s)	276, 313, 339
BshVI	ATCGAT	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	276, 313, 339
Bsp143I	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	8 cut(s)	4, 210, 215, 314, 343, 346, 393, 416
BspDI	ATCGAT	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	80, 305
BspPI	GGATC	3 cut(s)	225, 232, 261
BssECI	CCNNGG	3 cut(s)	127, 270, 307
BssMI	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	24, 35, 44
BstDSI	CCRYGG	2 cut(s)	127, 307
BstF5I	GGATG	6 cut(s)	179, 187, 199, 329, 330, 344
BstKTI	GATC	7 cut(s)	87, 220, 236, 240, 245, 256, 265
BstMBI	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	217, 253
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	2 cut(s)	217, 253
Bsu15I	ATCGAT	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	2 cut(s)	127, 307
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	6 cut(s)	179, 187, 199, 329, 330, 344
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	236
CviAII	CATG	3 cut(s)	107, 160, 308
CviJI	RGCY	2 cut(s)	140, 290
CviKI_1	RGCY	2 cut(s)	140, 290
DdeI	CTNAG	3 cut(s)	24, 35, 44
DpnI	GATC	7 cut(s)	86, 219, 235, 239, 244, 255, 264
DpnII	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	110, 163, 311
FaiI	YATR	6 cut(s)	9, 108, 161, 207, 277, 309
FatI	CATG	3 cut(s)	106, 159, 307
Fnu4HI	GCNGC	2 cut(s)	344, 417
FokI	GGATG	6 cut(s)	186, 194, 206, 316, 337, 351
Fsp4HI	GCNGC	2 cut(s)	344, 417
FspBI	CTAG	3 cut(s)	54, 111, 291
GluI	GCNGC	2 cut(s)	344, 417
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	3 cut(s)	110, 163, 311
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	103, 242, 267, 405
Hpy188III	TCNNGA	3 cut(s)	54, 82, 231
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	24, 35, 44
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	110, 163, 311
Kzo9I	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	80, 95, 231, 244, 256, 281, 283, 304, 346
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	3 cut(s)	54, 111, 291
MaeII	ACGT	1 cut(s)	95
MalI	GATC	7 cut(s)	86, 219, 235, 239, 244, 255, 264
MboI	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
MboII	GAAGA	1 cut(s)	250
MflI	RGATCY	2 cut(s)	217, 253
MluCI	AATT	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	69, 315, 403, 414
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
NlaIII	CATG	3 cut(s)	110, 163, 311
NlaIV	GGNNCC	2 cut(s)	80, 305
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	345, 418
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	80, 305
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	217, 253
RseI	CAYNNNNRTG	1 cut(s)	210
SatI	GCNGC	2 cut(s)	344, 417
Sau3AI	GATC	7 cut(s)	84, 217, 233, 237, 242, 253, 262
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	6 cut(s)	30, 98, 116, 272, 414, 425
SfaNI	GCATC	1 cut(s)	338
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	210
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	8 cut(s)	4, 210, 215, 314, 343, 346, 393, 416
SspMI	CTAG	3 cut(s)	54, 111, 291
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	307
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	236, 261
TasI	AATT	1 cut(s)	13
TauI	GCSGC	2 cut(s)	346, 419
TspGWI	ACGGA	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	3 cut(s)	54, 111, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.