Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Forward (+)

17196007 .. 17197221

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1214200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTTCACCACCATCTCTTCCTTCTGAAATATTGTTTGATCAGATTTTAACGCGAATCAAATCACTCTATAGTCTAGGCCGTTGTAGGCTGGTTTCGAAGGACTGGAATCACATCACATATGACTCATGGTTCTGGCATTTGTTTTGTAAGAGGAGCGGCACAGTTTCTGGGCTTTTAATTCCGAACAAATATTCATCAACCTTGGCGTCTATTGATAGTAAGTCCAACAAGACTTTGATACTTTCATCGCTACTAAACTTCTTGCCTGTTCCTGTCAAGATCAAAGCTGTCAGTAGTACTCATGGCCTAGTGTTTTGCGTGAGCCAAAACCCTAGACCCTCCTCCGTGGCACCTGATTATTTTGTGTGCAAGCCGACTACTCTACAATATGAGATATTACCCAATCCAAAAACTAGGTACTTTAACAGAATAACTGCTATGGTTGTGTTGAGCTCGAAACCCTTAAGGTACAAGATTATTCGGTTCTCAGATCCCAAAACTCCAATCTCCGTCTACAAGCCTCATCATAAACTAAAAAGCTACAACAACCTAATGTGCGAGGTGTTTGATTCAAACACTTGGGCATGGAAGAAACTGAAGGATGTTACTAGTTTACCCTATTGTGTTTTCTTCGGTTTTCACCGGCCTTGTGTAACAGCATGCGGCGCGTGCTACTGGCTTCTAACAAACAACCAAGTATTCGCTTTTTATTACGGAGATAACGAAGATAGATGGGAAATATTTGATTTACCGCAGCCGGTACGTGATAGTGACTGTTTCAATTTTAACCAACTCGTGGAGTACCAAGGTCATCTTGGTTTGATTTATTTTGATAGAAGAGAGACGTTCATGAAGTTATGGGTAATGGAAGATCATGATAAAAAAGTATGGAGCAAGAGACAAGCATTGAACATTGATCTTGAAGTTCTTGAAGATTTGGAGGGCTATTGTGCTCCTTTTCCTGAAGCACTTTACAACAGTGATATTGCACTGATGAAAGGGTTCTACAAAGTTATCTTTTACAACTTTCAGGATTCTAGCTGTAAGGTGGCTCGGCTACGGGATCAACCTTATGAGATTTTCAAGCTGCAGTCGGATTTTGAGAAAGTTAATTTGAGGGGTCCGTGGAGATGGCAAGACTTTAGTTTCATCTTCTTCTTGTTTGCTTTTGCTCTGTTTAGTTATGGTTTATGTTTTGTGTTAGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FBA_3

Protein Analysis

405

Amino Acids

47.24

Weight (kDa)

8.88

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	6 - 51	2.8e-07	F-box-like
FBA_3	PF08268	93 - 304	8.7e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1213
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	2 cut(s)	55, 671
AciI	CCGC	3 cut(s)	159, 666, 755
AclWI	GGATC	2 cut(s)	488, 1074
AcuI	CTGAAG	2 cut(s)	620, 987
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	5 cut(s)	301, 422, 473, 765, 806
AfiI	CCNNNNNNNGG	1 cut(s)	799
AflII	CTTAAG	1 cut(s)	466
AgsI	TTSAA	6 cut(s)	576, 784, 913, 926, 935, 1087
AhlI	ACTAGT	1 cut(s)	611
AluBI	AGCT	5 cut(s)	290, 456, 543, 1044, 1090
AluI	AGCT	5 cut(s)	290, 456, 543, 1044, 1090
Alw21I	GWGCWC	2 cut(s)	458, 958
Alw26I	GTCTC	2 cut(s)	839, 895
AlwI	GGATC	2 cut(s)	488, 1074
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	79, 307, 647
ApeKI	GCWGC	2 cut(s)	757, 1090
Asp700I	GAANNNNTTC	1 cut(s)	1004
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	1 cut(s)	1124
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	1124
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	458
BauI	CACGAG	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	458, 958
BbvI	GCAGC	2 cut(s)	769, 1077
BccI	CCATC	3 cut(s)	22, 729, 1128
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	839, 895
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	6 cut(s)	77, 311, 336, 417, 612, 1041
BfmI	CTRYAG	2 cut(s)	70, 1091
BfrI	CTTAAG	1 cut(s)	466
BisI	GCNGC	4 cut(s)	160, 667, 758, 1091
BlsI	GCNGC	4 cut(s)	161, 668, 759, 1092
BmcAI	AGTACT	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	1124
BmgT120I	GGNCC	1 cut(s)	1124
BmiI	GGNNCC	2 cut(s)	354, 1125
Bpu14I	TTCGAA	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	767
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	204, 348, 808, 1127
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse118I	RCCGGY	2 cut(s)	645, 760
Bse1I	ACTGG	2 cut(s)	110, 683
BseDI	CCNNGG	4 cut(s)	204, 348, 808, 1127
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	110, 683
BseRI	GAGGAG	2 cut(s)	169, 334
BseXI	GCAGC	2 cut(s)	769, 1077
Bsh1236I	CGCG	2 cut(s)	55, 671
BshFI	GGCC	3 cut(s)	81, 309, 649
BshNI	GGYRCC	1 cut(s)	352
BsiHKAI	GWGCWC	2 cut(s)	458, 958
BsiSI	CCGG	2 cut(s)	646, 761
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	2 cut(s)	839, 895
BsmBI	CGTCTC	1 cut(s)	839
BsnI	GGCC	3 cut(s)	81, 309, 649
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	458, 958
Bsp143I	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
BspACI	CCGC	3 cut(s)	159, 666, 755
BspANI	GGCC	3 cut(s)	81, 309, 649
BspCNI	CTCAG	1 cut(s)	503
BspFNI	CGCG	2 cut(s)	55, 671
BspHI	TCATGA	2 cut(s)	852, 877
BspLI	GGNNCC	2 cut(s)	354, 1125
BspMAI	CTGCAG	1 cut(s)	1095
BspPI	GGATC	2 cut(s)	488, 1074
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	159
BsrFI	RCCGGY	2 cut(s)	645, 760
BsrI	ACTGG	2 cut(s)	110, 683
BssAI	RCCGGY	2 cut(s)	645, 760
BssECI	CCNNGG	4 cut(s)	204, 348, 808, 1127
BssMI	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
BssNI	GRCGYC	1 cut(s)	209
BssSI	CACGAG	1 cut(s)	797
BssT1I	CCWWGG	2 cut(s)	204, 808
Bst2BI	CACGAG	1 cut(s)	797
Bst4CI	ACNGT	3 cut(s)	166, 779, 983
Bst6I	CTCTTC	2 cut(s)	24, 835
BstACI	GRCGYC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	767
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	374, 664, 673
BstDEI	CTNAG	1 cut(s)	490
BstDSI	CCRYGG	2 cut(s)	348, 1127
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	2 cut(s)	55, 671
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	6 cut(s)	43, 285, 496, 877, 922, 1069
BstMAI	GTCTC	2 cut(s)	839, 895
BstMBI	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 672
BstNSI	RCATGY	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	70, 1091
BstUI	CGCG	2 cut(s)	55, 671
BstV1I	GCAGC	2 cut(s)	769, 1077
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	81, 309, 649
BtgI	CCRYGG	2 cut(s)	348, 1127
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	988, 992
Cac8I	GCNNGC	3 cut(s)	374, 664, 673
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	2 cut(s)	852, 877
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	2 cut(s)	645, 760
Cfr13I	GGNCC	1 cut(s)	1124
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	5 cut(s)	300, 421, 472, 764, 805
CviAII	CATG	6 cut(s)	129, 305, 588, 663, 853, 878
CviQI	GTAC	5 cut(s)	300, 421, 472, 764, 805
DdeI	CTNAG	1 cut(s)	490
DpnI	GATC	6 cut(s)	42, 284, 495, 876, 921, 1068
DpnII	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
Eam1104I	CTCTTC	2 cut(s)	24, 835
EarI	CTCTTC	2 cut(s)	24, 835
Ecl136II	GAGCTC	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	204, 808
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	1124
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	620, 987
EcoICRI	GAGCTC	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	204, 808
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	2 cut(s)	204, 808
Esp3I	CGTCTC	1 cut(s)	839
FaeI	CATG	6 cut(s)	132, 308, 591, 666, 856, 881
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FatI	CATG	6 cut(s)	128, 304, 587, 662, 852, 877
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	4 cut(s)	160, 667, 758, 1091
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	160, 667, 758, 1091
FspBI	CTAG	6 cut(s)	77, 311, 336, 417, 612, 1041
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	4 cut(s)	160, 667, 758, 1091
HaeIII	GGCC	3 cut(s)	81, 309, 649
HapII	CCGG	2 cut(s)	646, 761
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	671
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	6 cut(s)	132, 308, 591, 666, 856, 881
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HinfI	GANTC	5 cut(s)	57, 109, 125, 572, 1037
HpaII	CCGG	2 cut(s)	646, 761
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	517, 617
Hpy188I	TCNGA	5 cut(s)	28, 45, 186, 493, 1099
Hpy188III	TCNNGA	7 cut(s)	280, 853, 878, 923, 932, 965, 1034
Hpy8I	GTNNAC	2 cut(s)	517, 617
HpyAV	CCTTC	3 cut(s)	33, 94, 595
HpyCH4III	ACNGT	3 cut(s)	166, 779, 983
HpyCH4IV	ACGT	2 cut(s)	766, 848
HpyCH4V	TGCA	3 cut(s)	372, 992, 1093
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 672
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	2 cut(s)	766, 848
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	6 cut(s)	132, 308, 591, 666, 856, 881
HspAI	GCGC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
LmnI	GCTCC	3 cut(s)	156, 894, 961
Lsp1109I	GCAGC	2 cut(s)	769, 1077
MaeI	CTAG	6 cut(s)	77, 311, 336, 417, 612, 1041
MaeII	ACGT	2 cut(s)	766, 848
MaeIII	GTNAC	3 cut(s)	607, 655, 773
MalI	GATC	6 cut(s)	42, 284, 495, 876, 921, 1068
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
MboII	GAAGA	9 cut(s)	11, 604, 625, 740, 852, 884, 947, 1147, 1150
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	458, 958
MluCI	AATT	3 cut(s)	180, 784, 1114
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	252, 1077
MnlI	CCTC	7 cut(s)	147, 352, 355, 534, 556, 937, 1113
MroXI	GAANNNNTTC	1 cut(s)	1004
MseI	TTAA	6 cut(s)	50, 179, 426, 467, 789, 1113
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	2 cut(s)	646, 761
MvnI	CGCG	2 cut(s)	55, 671
MwoI	GCNNNNNNNGC	2 cut(s)	668, 672
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
NlaIII	CATG	6 cut(s)	132, 308, 591, 666, 856, 881
NlaIV	GGNNCC	2 cut(s)	354, 1125
NmeAIII	GCCGAG	1 cut(s)	1036
NmuCI	GTSAC	1 cut(s)	773
NspI	RCATGY	1 cut(s)	666
NspV	TTCGAA	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	666
PagI	TCATGA	2 cut(s)	852, 877
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	1004
PfeI	GAWTC	4 cut(s)	57, 109, 572, 1037
PflMI	CCANNNNNTGG	1 cut(s)	799
PkrI	GCNGC	4 cut(s)	161, 668, 759, 1092
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	767
PsiI	TTATAA	1 cut(s)	1213
Psp124BI	GAGCTC	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	354, 1125
PspPI	GGNCC	1 cut(s)	1124
PstI	CTGCAG	1 cut(s)	1095
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	5 cut(s)	301, 422, 473, 765, 806
RsaNI	GTAC	5 cut(s)	300, 421, 472, 764, 805
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	6 cut(s)	50, 179, 426, 467, 789, 1113
SatI	GCNGC	4 cut(s)	160, 667, 758, 1091
Sau3AI	GATC	6 cut(s)	40, 282, 493, 874, 919, 1066
Sau96I	GGNCC	1 cut(s)	1124
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	458, 958
SfcI	CTRYAG	2 cut(s)	70, 1091
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	1124
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SpeI	ACTAGT	1 cut(s)	611
SphI	GCATGC	1 cut(s)	666
Sse9I	AATT	3 cut(s)	180, 784, 1114
SsiI	CCGC	3 cut(s)	159, 666, 755
SspI	AATATT	3 cut(s)	33, 194, 744
SspMI	CTAG	6 cut(s)	77, 311, 336, 417, 612, 1041
SstI	GAGCTC	1 cut(s)	458
StyI	CCWWGG	2 cut(s)	204, 808
TaaI	ACNGT	3 cut(s)	166, 779, 983
TaiI	ACGT	2 cut(s)	769, 851
TaqI	TCGA	2 cut(s)	98, 458
TasI	AATT	3 cut(s)	180, 784, 1114
TatI	WGTACW	1 cut(s)	299
TauI	GCSGC	2 cut(s)	162, 669
TfiI	GAWTC	4 cut(s)	57, 109, 572, 1037
Tru1I	TTAA	6 cut(s)	50, 179, 426, 467, 789, 1113
Tru9I	TTAA	6 cut(s)	50, 179, 426, 467, 789, 1113
TscAI	CASTG	2 cut(s)	988, 999
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	2 cut(s)	757, 1090
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	6 cut(s)	186, 237, 841, 869, 1013, 1141
TspGWI	ACGGA	4 cut(s)	337, 502, 732, 1116
TspRI	CASTG	2 cut(s)	988, 999
Van91I	CCANNNNNTGG	1 cut(s)	799
Vha464I	CTTAAG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	1124
XceI	RCATGY	1 cut(s)	666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	1004
XspI	CTAG	6 cut(s)	77, 311, 336, 417, 612, 1041
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.