Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

16683165 .. 16683942

Gene Structure 778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATGATGAATTCTCCGTTGGATTACGATGTGTTGCTAGAGATCATGTCTTATTGTCCTGCAACGGAGATGGCAAAATTCCGTCTACTAAGCAAAGAATGCAACAAACGAAGTTATGAGATGAGTTTTATCAATCGTCATCTCCATAGAACCAACTCTTTCCTCGGCTATATATTTTATTACAAAGATAACAAGTGGTTTAGGAATCACTCATGTTTTGTCTCCGGCGTCGATGAGAAAGATAAAAACCGAATCAATCTTGCCTTTCTTCCTCCCCTTTGTAATGTATCCATCGAAGCTTGTGATACACATCATGGGATTTTGCTCTGTGTCGATGTTGTGTTTAAAGGTAGGCAAAAGATACCAGATTACATCGTCTGCAAACCGGCTACAAAACAGTACCGGATCATACCAAACCCAAAGACCAGGTTTGGCACTGTCGCAACCGGTTTAATGGTGATTTCGTCGAACCCGTTTCGGTATAAGATCATTAGGGTTTCTGATACATGGGCAAGAGTGGGTAGGGATGGTGTCTATAATCTACGAGAGAGTTTGTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_3

Protein Analysis

187

Amino Acids

21.86

Weight (kDa)

9.25

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	10, 77
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	401
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	10, 77
AsiGI	ACCGGT	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	469
BccI	CCATC	3 cut(s)	64, 299, 521
BciT130I	CCWGG	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	2 cut(s)	402, 446
Bse118I	RCCGGY	2 cut(s)	385, 446
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	309
BshTI	ACCGGT	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	225, 386, 403, 447
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	42, 405, 486
BspPI	GGATC	1 cut(s)	413
BsrFI	RCCGGY	2 cut(s)	385, 446
BssAI	RCCGGY	2 cut(s)	385, 446
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	42, 405, 486
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	2 cut(s)	399, 439
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	3 cut(s)	45, 408, 489
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	42, 405, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	435
Cfr10I	RCCGGY	2 cut(s)	385, 446
CseI	GACGC	1 cut(s)	217
CsiI	ACCWGGT	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	400
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	4 cut(s)	46, 213, 314, 507
CviJI	RGCY	3 cut(s)	168, 299, 389
CviKI_1	RGCY	3 cut(s)	168, 299, 389
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	3 cut(s)	44, 407, 488
DpnII	GATC	3 cut(s)	42, 405, 486
DraI	TTTAAA	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	425
FaeI	CATG	4 cut(s)	49, 216, 317, 510
FatI	CATG	4 cut(s)	45, 212, 313, 506
FblI	GTMKAC	1 cut(s)	85
FokI	GGATG	1 cut(s)	539
FspBI	CTAG	1 cut(s)	38
HapII	CCGG	4 cut(s)	225, 386, 403, 447
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	49, 216, 317, 510
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	205, 252
HpaII	CCGG	4 cut(s)	225, 386, 403, 447
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	502
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	2 cut(s)	233, 469
HpyCH4III	ACNGT	2 cut(s)	399, 439
HpyCH4V	TGCA	3 cut(s)	62, 102, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	49, 216, 317, 510
Kzo9I	GATC	3 cut(s)	42, 405, 486
LpnPI	CCDG	8 cut(s)	72, 238, 378, 399, 412, 416, 439, 460
MabI	ACCWGGT	1 cut(s)	425
MaeI	CTAG	1 cut(s)	38
MalI	GATC	3 cut(s)	44, 407, 488
MboI	GATC	3 cut(s)	42, 405, 486
MboII	GAAGA	1 cut(s)	260
MluCI	AATT	2 cut(s)	10, 77
MnlI	CCTC	2 cut(s)	173, 282
MseI	TTAA	2 cut(s)	345, 452
MspI	CCGG	4 cut(s)	225, 386, 403, 447
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	3 cut(s)	42, 405, 486
NlaIII	CATG	4 cut(s)	49, 216, 317, 510
NmeAIII	GCCGAG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	205, 252
PinAI	ACCGGT	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	345, 452
Sau3AI	GATC	3 cut(s)	42, 405, 486
ScrFI	CCNGG	1 cut(s)	427
SetI	ASST	3 cut(s)	301, 352, 431
SexAI	ACCWGGT	1 cut(s)	425
Sse9I	AATT	2 cut(s)	10, 77
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	399, 439
TaqI	TCGA	4 cut(s)	231, 294, 333, 467
TasI	AATT	2 cut(s)	10, 77
TfiI	GAWTC	2 cut(s)	205, 252
Tru1I	TTAA	2 cut(s)	345, 452
Tru9I	TTAA	2 cut(s)	345, 452
TscAI	CASTG	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	3 cut(s)	6, 71, 80
TspRI	CASTG	1 cut(s)	442
XapI	RAATTY	2 cut(s)	10, 77
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.