Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Forward (+)

17187609 .. 17188166

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCCTCGTCATCACTACCATCCCTTCCTTCAGAAATATGGTTTGATCAGATTCTAACACGAACATCGCTCGAAAGTCTAGGCCGGTGTAGGCTGGTTTCAAAGGAGTGGAATCACATCACGTATGACTCAAGGTTCTGGCAATTTCTTTGCGAGAGAAGTAGCACAGTTTCGGGGTTTCTAGTCGAGAATCGGGTCAAATATGGGAAAACTTTACAAACGTTCGTGTCTGTTGATAATAAGGCAAACAAAAATTTGACACACTCAGTTATGGACTTCATGCCTGTCCCAGTGCGCATTGAAGCTGTGAGTCGTCAAGGTCTAGTGTTTTGTATGAGCGAAAATAATTACCAACTTTTTGTCTGCAAACCTACCACTAGACAATGGGAAAAGTTACCGAATCCAAAGAACAGGTATTTCACTTCGACGACTGCCATAGTTGTGTTAAGTTCAAAGCCTCTAAGGTACAAGATTATTCAGATTTCAAGAGCCCAGTATCCCTTCTCCAAGGCCAAGTCAACACAGTACTTCAAGTGGAGATTTGAGGTGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

186

Amino Acids

21.68

Weight (kDa)

9.78

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 52	2.7e-08	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
AclI	AACGTT	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	2 cut(s)	467, 527
AgsI	TTSAA	5 cut(s)	102, 302, 453, 486, 532
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AoxI	GGCC	3 cut(s)	3, 82, 510
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	493
BccI	CCATC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	46
BfaI	CTAG	4 cut(s)	80, 182, 323, 378
BfuI	GTATCC	1 cut(s)	507
BmcAI	AGTACT	1 cut(s)	527
BmrI	ACTGGG	2 cut(s)	284, 487
BmuI	ACTGGG	2 cut(s)	284, 487
BpuEI	CTTGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	507
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	290, 493
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	290, 493
BshFI	GGCC	3 cut(s)	5, 84, 512
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	5, 84, 512
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	3 cut(s)	5, 84, 512
BspCNI	CTCAG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	290, 493
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	169, 525
BstBAI	YACGTR	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	265, 461
BstF5I	GGATG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	5, 84, 512
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	297
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	466, 526
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	7 cut(s)	5, 84, 94, 305, 457, 491, 512
CviKI_1	RGCY	7 cut(s)	5, 84, 94, 305, 457, 491, 512
CviQI	GTAC	2 cut(s)	466, 526
DdeI	CTNAG	2 cut(s)	265, 461
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	1 cut(s)	283
FaiI	YATR	7 cut(s)	40, 126, 204, 272, 281, 335, 437
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	46
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	493
FspAI	RTGCGCAY	1 cut(s)	296
FspBI	CTAG	4 cut(s)	80, 182, 323, 378
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	5, 84, 512
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	6 cut(s)	52, 112, 128, 190, 310, 400
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	3 cut(s)	34, 51, 480
Hpy188III	TCNNGA	2 cut(s)	187, 486
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	35, 39, 511
HpyCH4III	ACNGT	2 cut(s)	169, 525
HpyCH4IV	ACGT	2 cut(s)	122, 221
HpyCH4V	TGCA	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	265, 461
HpySE526I	ACGT	2 cut(s)	122, 221
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	80, 98, 124, 297, 303, 397, 506
MaeI	CTAG	4 cut(s)	80, 182, 323, 378
MaeII	ACGT	2 cut(s)	122, 221
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	3 cut(s)	143, 253, 346
MlyI	GAGTC	2 cut(s)	122, 319
MnlI	CCTC	3 cut(s)	16, 468, 538
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	283
NsbI	TGCGCA	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	52, 112, 190, 400
PleI	GAGTC	2 cut(s)	122, 318
PpsI	GAGTC	2 cut(s)	122, 318
Ppu21I	YACGTR	1 cut(s)	123
Psp1406I	AACGTT	1 cut(s)	221
RsaI	GTAC	2 cut(s)	467, 527
RsaNI	GTAC	2 cut(s)	466, 526
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	446
Sau3AI	GATC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	2 cut(s)	122, 319
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	9 cut(s)	125, 137, 224, 307, 322, 373, 416, 467, 549
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	3 cut(s)	143, 253, 346
SspMI	CTAG	4 cut(s)	80, 182, 323, 378
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	169, 525
TaiI	ACGT	2 cut(s)	125, 224
TaqI	TCGA	3 cut(s)	72, 186, 425
TasI	AATT	3 cut(s)	143, 253, 346
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	4 cut(s)	52, 112, 190, 400
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	253
XspI	CTAG	4 cut(s)	80, 182, 323, 378
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.