Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

3291437 .. 3292461

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCAGAGTAGCTTAGCAGCAGCAGAAACAGTTGGTAACTACGAAGACCTCCTGAAACAGGTCCTCCTACGTTTACCAGCTCGATCACTCATCCGCTTCATATGCGTCTCTAAGCTTTGGCTCTCTCATCTCCAGCCCCAAATTCTGCGAATCTCACACCCTCTAAAACCCAATCCCAAGAATGGGGAGGTTGAGTCGGGTTTACTTGTGCTCTACTTTCTAATTGATGAGTTCGATGAAGCAACCGAAGAAGTTCTTCAGATGAATAACGTCCATGGTTATCTGCCTCTTCTGCATGCCTCCTTGTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FBA_3

Protein Analysis

104

Amino Acids

11.77

Weight (kDa)

5.72

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	58, 182, 183
AluBI	AGCT	3 cut(s)	12, 80, 115
AluI	AGCT	3 cut(s)	12, 80, 115
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	17, 20
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	252, 255
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	29, 32
BcoDI	GTCTC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	18, 21
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	2 cut(s)	19, 22
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 182, 183
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	58, 182, 183
BseXI	GCAGC	2 cut(s)	29, 32
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	3 cut(s)	58, 182, 183
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	83
Bsp1720I	GCTNAGC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	13, 111
BstDSI	CCRYGG	1 cut(s)	274
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 292
BstNSI	RCATGY	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	29, 32
BstV2I	GAAGAC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	275, 296
CviJI	RGCY	5 cut(s)	12, 80, 115, 121, 136
CviKI_1	RGCY	5 cut(s)	12, 80, 115, 121, 136
DdeI	CTNAG	2 cut(s)	13, 111
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	278, 299
FaiI	YATR	4 cut(s)	101, 103, 276, 297
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	2 cut(s)	274, 295
FauNDI	CATATG	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	18, 21
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	18, 21
GluI	GCNGC	2 cut(s)	18, 21
GsuI	CTGGAG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	278, 299
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	150, 194
Hpy166II	GTNNAC	2 cut(s)	74, 203
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	74, 203
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	70, 270
HpyCH4V	TGCA	2 cut(s)	4, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 292
HpyF3I	CTNAG	2 cut(s)	13, 111
HpySE526I	ACGT	2 cut(s)	70, 270
Hsp92II	CATG	2 cut(s)	278, 299
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	4 cut(s)	44, 65, 90, 146
Lsp1109I	GCAGC	2 cut(s)	29, 32
MaeII	ACGT	2 cut(s)	70, 270
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	56, 248, 260, 281
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	141, 222
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	59, 74, 171, 181, 297, 310
MroXI	GAANNNNTTC	2 cut(s)	252, 255
MwoI	GCNNNNNNNGC	2 cut(s)	102, 292
NcoI	CCATGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	278, 299
NspI	RCATGY	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	252, 255
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	19, 22
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
SatI	GCNGC	2 cut(s)	18, 21
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	8 cut(s)	14, 51, 63, 73, 82, 117, 192, 273
SinI	GGWCC	1 cut(s)	61
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	2 cut(s)	141, 222
SsiI	CCGC	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	73, 273
TaqI	TCGA	2 cut(s)	82, 234
TasI	AATT	2 cut(s)	141, 222
TfiI	GAWTC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	17, 20
TspDTI	ATGAA	3 cut(s)	88, 252, 278
VpaK11BI	GGWCC	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	2 cut(s)	252, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.