Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006198.1

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Forward (+)

29013 .. 30326

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006198.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atggcttcatcacaaacacttccttctgacctctatttcgagatactgacccgagcatccttcgatactgttggccggtgcaggctcgtttcgaaacaatggaaccacctcacatacgattcaagtttcataaatcaactatctcagagaaccaaaacaacacacggggttttcattcaaagctcgatcagcagtaattatatatccacctttgttcaagctgtgggtaacaacgacgtctccaactccgaacagctgtccttaaatttcctgcctcagccggtgaagattgaagctgctcatcagggtatactcgtttgtgtgagccagaaacgtgttcctcaatactatgtctgcaagccaaccactagggaatgggagcagatacacaacccaaaaacgaggtatatgacggtaaaaattgccttaatggtgttacgatcaaacccgttaaggtacacgatcgtccggttctcagaaccaaagtctccatattccaagtacaagtcgcaggaacactgctacaaccttaggtgtgaggtatatgattccaaagctcgagcatggaaacagttgaacaatgtagctttacccaaagatgcttatatcttgaggtttcaacctgcagtatcggcatgcggtgcactccactggcttttgtcagacaaccgagtcggaatctttgcttttcatgtagatgaagagaactgggaaatatttgcaccaccgtgcttggcagtcgataatgtcaatgggaatcaggtggtggagtaccaaggccgccttgcatggatttgtgaagtagaggactcgatggagctatgggttatggaagactacaagaacaaagtatggagtaaaagacagatactaaggatcaaaggactggatcgtcttgcttcttttgcaactctttgcaataatgatgttgcactcatgagaggatttttcaagataatattttacaagtttggagattatagctccaagatagcaaatctagaggaaatttctcgaccagatgagatcttcatgtttcaatcagattcagagcctactagattgaagggtccattgaagtcttgggtaataataagatggtttcgttcgattaaaaagaagcggtctccaataactaagtatcgcctcaggactgttgggaaattctgcagtacatatgggacgtatgccatagagtttgtgtttctgtttttggctttgaggacacaattaatccaaagattgacacactatctatatggcgtaacacatgtattgcaaacgggcttggagtactggttagctggtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FBA_3

Protein Analysis

437

Amino Acids

50.77

Weight (kDa)

9.35

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	671, 891
AatII	GACGTC	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	3 cut(s)	639, 781, 1123
AclWI	GGATC	2 cut(s)	884, 897
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	3 cut(s)	265, 1008, 1163
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	5 cut(s)	458, 503, 773, 1174, 1295
AflIII	ACRYGT	2 cut(s)	334, 1270
AleI	CACNNNNGTG	1 cut(s)	727
AluBI	AGCT	9 cut(s)	183, 221, 256, 296, 557, 587, 820, 984, 1304
AluI	AGCT	9 cut(s)	183, 221, 256, 296, 557, 587, 820, 984, 1304
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	3 cut(s)	244, 492, 1131
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	2 cut(s)	884, 897
Ama87I	CYCGRG	2 cut(s)	51, 558
AoxI	GGCC	2 cut(s)	73, 778
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	3 cut(s)	265, 1008, 1163
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AseI	ATTAAT	1 cut(s)	1232
AspS9I	GGNCC	1 cut(s)	1070
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	2 cut(s)	51, 558
AvaII	GGWCC	1 cut(s)	1070
AxyI	CCTNAGG	2 cut(s)	530, 1148
BaeGI	GKGCMC	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	646
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	808, 1092
BcoDI	GTCTC	3 cut(s)	244, 492, 1131
BfaI	CTAG	3 cut(s)	369, 1001, 1059
BfmI	CTRYAG	2 cut(s)	624, 1168
BfuAI	ACCTGC	1 cut(s)	631
BglII	AGATCT	1 cut(s)	1026
BisI	GCNGC	2 cut(s)	297, 781
BlsI	GCNGC	2 cut(s)	298, 782
BmcAI	AGTACT	1 cut(s)	1295
Bme18I	GGWCC	1 cut(s)	1070
BmeT110I	CYCGRG	2 cut(s)	51, 558
BmgT120I	GGNCC	1 cut(s)	1070
BmiI	GGNNCC	2 cut(s)	104, 1071
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	2 cut(s)	65, 589
BmuI	ACTGGG	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	840
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	1131
BsaJI	CCNNGG	1 cut(s)	775
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 1283, 1313
Bse118I	RCCGGY	2 cut(s)	75, 280
Bse1I	ACTGG	4 cut(s)	656, 713, 891, 1301
Bse21I	CCTNAGG	2 cut(s)	530, 1148
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	1 cut(s)	56
BseMII	CTCAG	4 cut(s)	158, 290, 489, 1162
BseNI	ACTGG	4 cut(s)	656, 713, 891, 1301
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	75, 780
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	2 cut(s)	51, 558
BsiSI	CCGG	3 cut(s)	76, 281, 469
BslFI	GGGAC	1 cut(s)	1195
BsmAI	GTCTC	3 cut(s)	244, 492, 1131
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	1195
BsnI	GGCC	2 cut(s)	75, 780
Bso31I	GGTCTC	1 cut(s)	1131
BsoBI	CYCGRG	2 cut(s)	51, 558
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
BspACI	CCGC	3 cut(s)	639, 781, 1123
BspANI	GGCC	2 cut(s)	75, 780
BspCNI	CTCAG	4 cut(s)	157, 289, 488, 1161
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	104, 1071
BspMAI	CTGCAG	2 cut(s)	628, 1172
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	884, 897
BspT104I	TTCGAA	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	1131
BsrFI	RCCGGY	2 cut(s)	75, 280
BsrI	ACTGG	4 cut(s)	656, 713, 891, 1301
BssAI	RCCGGY	2 cut(s)	75, 280
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
BssNAI	GTATAC	1 cut(s)	311
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	775
Bst1107I	GTATAC	1 cut(s)	311
Bst4CI	ACNGT	5 cut(s)	70, 415, 573, 729, 1156
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	83, 359, 637
BstDEI	CTNAG	7 cut(s)	144, 276, 475, 530, 872, 1137, 1148
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	6 cut(s)	189, 443, 465, 879, 892, 1029
BstMAI	GTCTC	3 cut(s)	244, 492, 1131
BstMBI	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 632, 641, 905
BstNSI	RCATGY	2 cut(s)	639, 1274
BstSFI	CTRYAG	2 cut(s)	624, 1168
BstSLI	GKGCMC	1 cut(s)	646
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	1 cut(s)	1026
BstYI	RGATCY	1 cut(s)	1026
BstZ17I	GTATAC	1 cut(s)	311
Bsu36I	CCTNAGG	2 cut(s)	530, 1148
BsuRI	GGCC	2 cut(s)	75, 780
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	517, 649
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	83, 359, 637
CciI	TCATGA	1 cut(s)	936
Cfr10I	RCCGGY	2 cut(s)	75, 280
Cfr13I	GGNCC	1 cut(s)	1070
Csp6I	GTAC	5 cut(s)	457, 502, 772, 1173, 1294
CspCI	CAANNNNNGTGG	2 cut(s)	714, 749
CviAII	CATG	7 cut(s)	564, 636, 692, 789, 937, 1033, 1271
CviQI	GTAC	5 cut(s)	457, 502, 772, 1173, 1294
DdeI	CTNAG	7 cut(s)	144, 276, 475, 530, 872, 1137, 1148
DpnI	GATC	6 cut(s)	188, 442, 464, 878, 891, 1028
DpnII	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
DrdI	GACNNNNNNGTC	2 cut(s)	671, 891
DseDI	GACNNNNNNGTC	2 cut(s)	671, 891
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	775
Eco31I	GGTCTC	1 cut(s)	1131
Eco47I	GGWCC	1 cut(s)	1070
Eco81I	CCTNAGG	2 cut(s)	530, 1148
Eco88I	CYCGRG	2 cut(s)	51, 558
EcoT14I	CCWWGG	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	7 cut(s)	567, 639, 695, 792, 940, 1036, 1274
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FaqI	GGGAC	1 cut(s)	1195
FatI	CATG	7 cut(s)	563, 635, 691, 788, 936, 1032, 1270
FauNDI	CATATG	1 cut(s)	1177
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	297, 781
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	297, 781
FspBI	CTAG	3 cut(s)	369, 1001, 1059
GluI	GCNGC	2 cut(s)	297, 781
HaeIII	GGCC	2 cut(s)	75, 780
HapII	CCGG	3 cut(s)	76, 281, 469
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	7 cut(s)	567, 639, 695, 792, 940, 1036, 1274
HinfI	GANTC	7 cut(s)	119, 548, 672, 678, 757, 809, 1046
HpaII	CCGG	3 cut(s)	76, 281, 469
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	311, 459, 644
Hpy188I	TCNGA	8 cut(s)	28, 147, 250, 478, 664, 677, 1045, 1051
Hpy188III	TCNNGA	7 cut(s)	40, 610, 937, 952, 1001, 1014, 1150
Hpy8I	GTNNAC	3 cut(s)	311, 459, 644
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	33, 70, 1060
HpyCH4III	ACNGT	5 cut(s)	70, 415, 573, 729, 1156
HpyCH4IV	ACGT	3 cut(s)	237, 334, 1184
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 632, 641, 905
HpyF3I	CTNAG	7 cut(s)	144, 276, 475, 530, 872, 1137, 1148
HpySE526I	ACGT	3 cut(s)	237, 334, 1184
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	7 cut(s)	567, 639, 695, 792, 940, 1036, 1274
Kzo9I	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
LmnI	GCTCC	3 cut(s)	379, 817, 989
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	2 cut(s)	65, 589
MaeI	CTAG	3 cut(s)	369, 1001, 1059
MaeII	ACGT	3 cut(s)	237, 334, 1184
MaeIII	GTNAC	3 cut(s)	227, 435, 1264
MalI	GATC	6 cut(s)	188, 442, 464, 878, 891, 1028
MboI	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
MboII	GAAGA	4 cut(s)	298, 713, 845, 1021
MflI	RGATCY	1 cut(s)	1026
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	6 cut(s)	196, 265, 420, 1008, 1163, 1229
MlyI	GAGTC	2 cut(s)	681, 803
MmeI	TCCRAC	2 cut(s)	267, 655
MseI	TTAA	5 cut(s)	263, 428, 452, 1113, 1232
MslI	CAYNNNNRTG	2 cut(s)	696, 727
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	3 cut(s)	76, 281, 469
MwoI	GCNNNNNNNGC	4 cut(s)	189, 632, 641, 905
NdeI	CATATG	1 cut(s)	1177
NdeII	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
NlaIII	CATG	7 cut(s)	567, 639, 695, 792, 940, 1036, 1274
NlaIV	GGNNCC	2 cut(s)	104, 1071
NspI	RCATGY	2 cut(s)	639, 1274
NspV	TTCGAA	1 cut(s)	92
OliI	CACNNNNGTG	1 cut(s)	727
PaeI	GCATGC	1 cut(s)	639
PaeR7I	CTCGAG	1 cut(s)	558
PagI	TCATGA	1 cut(s)	936
PciI	ACATGT	1 cut(s)	1270
PfeI	GAWTC	5 cut(s)	119, 548, 678, 757, 1046
PkrI	GCNGC	2 cut(s)	298, 782
Ple19I	CGATCG	1 cut(s)	465
PleI	GAGTC	2 cut(s)	680, 803
PpsI	GAGTC	2 cut(s)	680, 803
PscI	ACATGT	1 cut(s)	1270
PshBI	ATTAAT	1 cut(s)	1232
PspN4I	GGNNCC	2 cut(s)	104, 1071
PspPI	GGNCC	1 cut(s)	1070
PspXI	VCTCGAGB	1 cut(s)	558
PstI	CTGCAG	2 cut(s)	628, 1172
PsuI	RGATCY	1 cut(s)	1026
PvuI	CGATCG	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	5 cut(s)	458, 503, 773, 1174, 1295
RsaNI	GTAC	5 cut(s)	457, 502, 772, 1173, 1294
RseI	CAYNNNNRTG	2 cut(s)	696, 727
SaqAI	TTAA	5 cut(s)	263, 428, 452, 1113, 1232
SatI	GCNGC	2 cut(s)	297, 781
Sau3AI	GATC	6 cut(s)	186, 440, 462, 876, 889, 1026
Sau96I	GGNCC	1 cut(s)	1070
ScaI	AGTACT	1 cut(s)	1295
SchI	GAGTC	2 cut(s)	681, 803
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	65, 589
SfcI	CTRYAG	2 cut(s)	624, 1168
Sfr274I	CTCGAG	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	1070
SlaI	CTCGAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	2 cut(s)	696, 727
SmlI	CTYRAG	2 cut(s)	558, 610
SmoI	CTYRAG	2 cut(s)	558, 610
SphI	GCATGC	1 cut(s)	639
Sse9I	AATT	6 cut(s)	196, 265, 420, 1008, 1163, 1229
SsiI	CCGC	3 cut(s)	639, 781, 1123
SspI	AATATT	2 cut(s)	717, 960
SspMI	CTAG	3 cut(s)	369, 1001, 1059
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	5 cut(s)	70, 415, 573, 729, 1156
TaiI	ACGT	3 cut(s)	240, 337, 1187
TaqI	TCGA	9 cut(s)	39, 63, 92, 185, 559, 741, 812, 1015, 1109
TasI	AATT	6 cut(s)	196, 265, 420, 1008, 1163, 1229
TatI	WGTACW	3 cut(s)	501, 1172, 1293
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	5 cut(s)	119, 548, 678, 757, 1046
Tru1I	TTAA	5 cut(s)	263, 428, 452, 1113, 1232
Tru9I	TTAA	5 cut(s)	263, 428, 452, 1113, 1232
TscAI	CASTG	2 cut(s)	524, 656
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	5 cut(s)	118, 163, 680, 714, 1021
TspRI	CASTG	2 cut(s)	524, 656
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	1070
VspI	ATTAAT	1 cut(s)	1232
XapI	RAATTY	3 cut(s)	265, 1008, 1163
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	2 cut(s)	639, 1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1080
XhoI	CTCGAG	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	3 cut(s)	369, 1001, 1059
ZraI	GACGTC	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.