Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006198.1

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

27479 .. 27787

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006198.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgttttctttgcaagtaaacaacattctgttgtggcgcgcagcaaatggtggtctccattggcttctgccaagtaaccaagtatttgctttctatgaagatgcagagaattgggaagtgttctcattgccacccttggcaatcgataatgcaggttacaactccaagctactacttgtggagtacaaaggtcagcttgcattgattcagagtggagaagaattcatggacatgtgggtgatggaaaattatgccagaaagtcatggagccagaggcggacatggaacatcaacaaactcaggggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

102

Amino Acids

11.96

Weight (kDa)

5.73

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	231
AluBI	AGCT	2 cut(s)	169, 196
AluI	AGCT	2 cut(s)	169, 196
Alw26I	GTCTC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	39, 41
AsuHPI	GGTGA	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	125
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	125
BsePI	GCGCGC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	269
BspMI	ACCTGC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	135
BssHII	GCGCGC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	39, 198
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	39, 41
BstMAI	GTCTC	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	235
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	39, 198
CfoI	GCGC	2 cut(s)	39, 41
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	226, 232, 264, 282
CviJI	RGCY	4 cut(s)	64, 169, 196, 270
CviKI_1	RGCY	4 cut(s)	64, 169, 196, 270
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	229, 235, 267, 285
FaiI	YATR	6 cut(s)	96, 227, 233, 252, 265, 283
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	4 cut(s)	225, 231, 263, 281
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
GlaI	GCGC	2 cut(s)	38, 40
GluI	GCNGC	1 cut(s)	42
HhaI	GCGC	2 cut(s)	39, 41
Hin1II	CATG	4 cut(s)	229, 235, 267, 285
Hin6I	GCGC	2 cut(s)	37, 39
HinP1I	GCGC	2 cut(s)	37, 39
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	13, 104, 152, 200
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	229, 235, 267, 285
HspAI	GCGC	2 cut(s)	37, 39
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	4 cut(s)	138, 268, 284, 286
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	74, 155
MboII	GAAGA	2 cut(s)	110, 230
MluCI	AATT	3 cut(s)	109, 221, 247
MnlI	CCTC	1 cut(s)	267
MslI	CAYNNNNRTG	2 cut(s)	230, 236
MvnI	CGCG	1 cut(s)	39
NlaIII	CATG	4 cut(s)	229, 235, 267, 285
NlaIV	GGNNCC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	235
PauI	GCGCGC	1 cut(s)	37
PciI	ACATGT	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	269
PteI	GCGCGC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	2 cut(s)	230, 236
SatI	GCNGC	1 cut(s)	42
SetI	ASST	4 cut(s)	157, 171, 193, 198
SfaNI	GCATC	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	230, 236
Sse9I	AATT	3 cut(s)	109, 221, 247
SsiI	CCGC	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	109, 221, 247
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	111, 214
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.