Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

18846098 .. 18848737

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G202900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCCTCACCACTACCATCTCTTCCTTCAGAAATATTTTTTGATCACATTCTAACACGAACATCACTCGAAAGCCTAGGCCGGTGCAGGCTGGTTTCAAAGGACTGGAACCACATCACATATGACTCAAGGTTCTGGAAATCTTTTTGCAAGAGAAGCGACACAATAACAAGGGCCAACAAGAATTTGTCACACGCAATTCTCGACTTCTTGCCTGCCCCTGTCAAAATTGAAGCTGTGAGTCAAGGCCTAGTGTTTTGTGTGAACCAAAATGTCAGCGTGGTTCGTGATTATTTTGTGTGCAAACCTACCACTCTACAGTGGGAAAAGTTACCAAATCCAAAGACTAGGTTCTTGACTTCAATGACTGCCATGGCTGTGTTGAGTTCGAAGCCTTTAAGGTACAAGATTATTCGGTTCTCGAGCCACAAGTATCCTTTCTCCAAGTTCAAGTCAAGACAGTACTATAACATGACATGTGAGGTGTTTGATTCAAACACTTGGGCATGGAAGAGGTTGAAGAATGTTAGTTTACCCTATTGTGTTTTATTGGGCATCGACCAGCCTTATGTAACATCATGCGGCGCGTTCTACTGGCTTGTTCGGCTTGCGAGGAGCAACCAAGTGTTTGCTTTTTATTACGAAGATGATAAAGAGAGTTGGGAGATTTTCGATTTACCAACTCCGATGGAGGAGAGTGACCGTTTCGATTACAAAAAACTCGTGGAGTACCAAGGTAGGCTTGCATTGATCATCTGTGAAGGGGAGGTCATGGACTTGTGGGTTATGGAAAATCATGAGAAAAAGTTATGGAGCAAGAGGAAGACATGGACATGGAGCACTAAAGTGTTTAAACAAGTAGAGGGCTATATTCCTCCTCTTGCAGCACTTTACAACAGTGATATTGCACTTACAAAAGGGCGCGATGAAAAACTCATATTTTACAATTTTGAAGATTCTAGTGCTAATGTGGTTAGTCTTGGGAATCAGCCCCATCAACTTTCGAAGCTGCAATCGGATTCTGAGAGAGTTTCTAAACTTTTCCGGTCAGAGAGTCGGTGTAATTTCCAATTTGGATTAATTCAAACTCAGAGAATTGGTCCTCTGGAGGCAAAGGAACATAGAGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

378

Amino Acids

44.15

Weight (kDa)

9.1

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	587, 924
AciI	CCGC	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	3 cut(s)	404, 464, 731
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	8 cut(s)	99, 233, 363, 451, 495, 520, 953, 1085
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	2 cut(s)	236, 1009
AluI	AGCT	2 cut(s)	236, 1009
Alw21I	GWGCWC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	4 cut(s)	3, 79, 174, 247
ApeKI	GCWGC	2 cut(s)	884, 1009
ApoI	RAATTY	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	1079
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	587, 924
AspS9I	GGNCC	2 cut(s)	174, 1100
AsuII	TTCGAA	2 cut(s)	389, 1004
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	1100
AvrII	CCTAGG	1 cut(s)	76
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	830
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	896, 996
BccI	CCATC	3 cut(s)	25, 682, 1002
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	2 cut(s)	43, 750
BfaI	CTAG	4 cut(s)	77, 251, 348, 960
BfmI	CTRYAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	3 cut(s)	583, 885, 1010
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	584, 886, 1011
BmcAI	AGTACT	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	1100
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	174, 1100
BmiI	GGNNCC	1 cut(s)	110
BmsI	GCATC	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	830
BpmI	CTGGAG	1 cut(s)	1127
Bpu14I	TTCGAA	2 cut(s)	389, 1004
BpuEI	CTTGAG	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	76, 372, 733
BsaWI	WCCGGW	1 cut(s)	1044
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	110, 599
BseDI	CCNNGG	3 cut(s)	76, 372, 733
BseMII	CTCAG	2 cut(s)	1014, 1103
BseNI	ACTGG	2 cut(s)	110, 599
BseRI	GAGGAG	3 cut(s)	628, 707, 867
BseXI	GCAGC	2 cut(s)	896, 996
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	2 cut(s)	587, 924
BshFI	GGCC	4 cut(s)	5, 81, 176, 249
BsiHKAI	GWGCWC	1 cut(s)	842
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	82, 1045
BsnI	GGCC	4 cut(s)	5, 81, 176, 249
BsoBI	CYCGRG	1 cut(s)	421
Bsp119I	TTCGAA	2 cut(s)	389, 1004
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp143I	GATC	2 cut(s)	43, 750
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	4 cut(s)	5, 81, 176, 249
BspCNI	CTCAG	2 cut(s)	1015, 1102
BspFNI	CGCG	2 cut(s)	587, 924
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	1 cut(s)	110
BspT104I	TTCGAA	2 cut(s)	389, 1004
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	110, 599
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	76, 372, 733
BssMI	GATC	2 cut(s)	43, 750
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	3 cut(s)	76, 372, 733
Bst2BI	CACGAG	1 cut(s)	722
Bst4CI	ACNGT	4 cut(s)	321, 462, 704, 899
Bst6I	CTCTTC	2 cut(s)	27, 506
BstBI	TTCGAA	2 cut(s)	389, 1004
BstC8I	GCNNGC	4 cut(s)	89, 216, 609, 744
BstDEI	CTNAG	2 cut(s)	1023, 1089
BstDSI	CCRYGG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	587, 924
BstHHI	GCGC	2 cut(s)	587, 924
BstKTI	GATC	2 cut(s)	46, 753
BstMBI	GATC	2 cut(s)	43, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 604
BstNSI	RCATGY	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	2 cut(s)	587, 924
BstV1I	GCAGC	2 cut(s)	896, 996
BstV2I	GAAGAC	1 cut(s)	830
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	5, 81, 176, 249
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	326, 904
Cac8I	GCNNGC	4 cut(s)	89, 216, 609, 744
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	2 cut(s)	587, 924
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	174, 1100
Csp6I	GTAC	3 cut(s)	403, 463, 730
CviQI	GTAC	3 cut(s)	403, 463, 730
DdeI	CTNAG	2 cut(s)	1023, 1089
DpnI	GATC	2 cut(s)	45, 752
DpnII	GATC	2 cut(s)	43, 750
DraI	TTTAAA	1 cut(s)	853
Eam1104I	CTCTTC	2 cut(s)	27, 506
EarI	CTCTTC	2 cut(s)	27, 506
Eco130I	CCWWGG	3 cut(s)	76, 372, 733
Eco147I	AGGCCT	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	1100
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	421
EcoT14I	CCWWGG	3 cut(s)	76, 372, 733
ErhI	CCWWGG	3 cut(s)	76, 372, 733
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	2 cut(s)	43, 750
Fnu4HI	GCNGC	3 cut(s)	583, 885, 1010
Fsp4HI	GCNGC	3 cut(s)	583, 885, 1010
FspBI	CTAG	4 cut(s)	77, 251, 348, 960
GlaI	GCGC	2 cut(s)	586, 923
GluI	GCNGC	3 cut(s)	583, 885, 1010
GsuI	CTGGAG	1 cut(s)	1127
HaeIII	GGCC	4 cut(s)	5, 81, 176, 249
HapII	CCGG	2 cut(s)	82, 1045
HhaI	GCGC	2 cut(s)	587, 924
Hin6I	GCGC	2 cut(s)	585, 922
HinP1I	GCGC	2 cut(s)	585, 922
HinfI	GANTC	7 cut(s)	125, 241, 491, 956, 985, 1019, 1054
HpaII	CCGG	2 cut(s)	82, 1045
Hpy166II	GTNNAC	2 cut(s)	265, 533
Hpy188I	TCNGA	6 cut(s)	31, 687, 1018, 1024, 1051, 1092
Hpy188III	TCNNGA	8 cut(s)	136, 203, 287, 355, 421, 456, 797, 1106
Hpy8I	GTNNAC	2 cut(s)	265, 533
HpyAV	CCTTC	2 cut(s)	36, 755
HpyCH4III	ACNGT	4 cut(s)	321, 462, 704, 899
HpyCH4V	TGCA	7 cut(s)	87, 150, 303, 746, 884, 908, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 604
HpyF3I	CTNAG	2 cut(s)	1023, 1089
HspAI	GCGC	2 cut(s)	585, 922
Ksp22I	TGATCA	2 cut(s)	43, 750
Kzo9I	GATC	2 cut(s)	43, 750
LmnI	GCTCC	3 cut(s)	615, 813, 837
Lsp1109I	GCAGC	2 cut(s)	896, 996
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	4 cut(s)	77, 251, 348, 960
MaeIII	GTNAC	4 cut(s)	189, 330, 571, 698
MalI	GATC	2 cut(s)	45, 752
MboI	GATC	2 cut(s)	43, 750
MboII	GAAGA	6 cut(s)	14, 523, 532, 656, 835, 965
MhlI	GDGCHC	1 cut(s)	842
MluCI	AATT	8 cut(s)	184, 198, 228, 946, 1063, 1070, 1080, 1095
MlyI	GAGTC	3 cut(s)	119, 250, 1063
MseI	TTAA	3 cut(s)	398, 852, 1079
MslI	CAYNNNNRTG	3 cut(s)	377, 832, 845
MspI	CCGG	2 cut(s)	82, 1045
MssI	GTTTAAAC	1 cut(s)	853
MvnI	CGCG	2 cut(s)	587, 924
MwoI	GCNNNNNNNGC	2 cut(s)	156, 604
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	2 cut(s)	43, 750
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	2 cut(s)	189, 698
NspI	RCATGY	1 cut(s)	480
NspV	TTCGAA	2 cut(s)	389, 1004
OliI	CACNNNNGTG	1 cut(s)	845
PaeR7I	CTCGAG	1 cut(s)	421
PagI	TCATGA	1 cut(s)	796
PceI	AGGCCT	1 cut(s)	249
PciI	ACATGT	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	491, 956, 985, 1019
PkrI	GCNGC	3 cut(s)	584, 886, 1011
PleI	GAGTC	3 cut(s)	119, 249, 1062
PmeI	GTTTAAAC	1 cut(s)	853
PpsI	GAGTC	3 cut(s)	119, 249, 1062
PscI	ACATGT	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	1079
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	174, 1100
RsaI	GTAC	3 cut(s)	404, 464, 731
RsaNI	GTAC	3 cut(s)	403, 463, 730
RseI	CAYNNNNRTG	3 cut(s)	377, 832, 845
SaqAI	TTAA	3 cut(s)	398, 852, 1079
SatI	GCNGC	3 cut(s)	583, 885, 1010
Sau3AI	GATC	2 cut(s)	43, 750
Sau96I	GGNCC	2 cut(s)	174, 1100
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	3 cut(s)	119, 250, 1063
SduI	GDGCHC	1 cut(s)	842
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	421
SfuI	TTCGAA	2 cut(s)	389, 1004
SinI	GGWCC	1 cut(s)	1100
SlaI	CTCGAG	1 cut(s)	421
SmiMI	CAYNNNNRTG	3 cut(s)	377, 832, 845
SmlI	CTYRAG	2 cut(s)	127, 421
SmoI	CTYRAG	2 cut(s)	127, 421
Sse9I	AATT	8 cut(s)	184, 198, 228, 946, 1063, 1070, 1080, 1095
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	582
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	4 cut(s)	77, 251, 348, 960
StuI	AGGCCT	1 cut(s)	249
StyI	CCWWGG	3 cut(s)	76, 372, 733
TaaI	ACNGT	4 cut(s)	321, 462, 704, 899
TaqI	TCGA	8 cut(s)	69, 204, 389, 422, 558, 672, 708, 1004
TasI	AATT	8 cut(s)	184, 198, 228, 946, 1063, 1070, 1080, 1095
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	491, 956, 985, 1019
Tru1I	TTAA	3 cut(s)	398, 852, 1079
Tru9I	TTAA	3 cut(s)	398, 852, 1079
TscAI	CASTG	2 cut(s)	326, 904
TseFI	GTSAC	2 cut(s)	189, 698
TseI	GCWGC	2 cut(s)	884, 1009
Tsp45I	GTSAC	2 cut(s)	189, 698
TspDTI	ATGAA	1 cut(s)	942
TspRI	CASTG	2 cut(s)	326, 904
VpaK11BI	GGWCC	1 cut(s)	1100
VspI	ATTAAT	1 cut(s)	1079
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	4 cut(s)	77, 251, 348, 960
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.