Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005421

Physical Location & Seq

Genomic Coordinates Reverse (-)

4322732 .. 4324046

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCTAGTTTGTGTAACACAAAAACGTGTACCTCAATACTATGTCTGCAAGCCAACTACCAAGGAATGGGAGCAGATACATAATCCGAAAACGAGGTATATGACGGTGAAAATTGCCTTAATGGTGTTGAGATCAAACCCGTTAAGGTACAAGATTGTCCGATTATCAGAACCAAAGTGTCAATATTCCAAGAACAAGTACAACCTTAGGTGTGAGATATATGATTCCAAAGCTCGGGCATGGAAACAGTTGTTGAACAATGTAGCTCTACCCAAGGATGCCTTCTTGAGCTGTACACCAGCAGTATCAGCCTGCGGTGCACTCCATTGGCTTTTGTCCGACCACCAAGTTGGAGTCTTTGCTTTTCATGTAGAAGAAGAAAGCTGGGAAATATTTGCACCACCGTGCTCGGCGGTCGGTGATCGTAATAAGAATAAGGTGGTGGACTACCAAGGACGTCTTGCATGGATTTGTGAAGGAGAGGGCTCCATGGAGCTTTGGGTTATGGAGGACTACAAGAACAAAGTATGGAGTAAAAGACAGATAATAAGGATCAAGGTACTGGATCCTTTTGCTTCTTTTGCAACTCTTTGCAATAACGATGTTGCACTCATGAGAGGATTTTCAAATATCATATTTAACAAGTTTGGAGATTATAGTTCCAAGATGGCAAATCTAGAGGGTCTTACTCGAGCCGATGAGATCTTTAAGTTCCAATCAGATTCACAGGTTACTAACTTGAAAGGTCCATTGAAGGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FBA_3

Protein Analysis

255

Amino Acids

29.26

Weight (kDa)

9.2

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	1 - 180	1.7e-13	F-box associated beta propeller domain
FBA_3	PF08268	2 - 183	3.1e-13	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	2 - 161	5.1e-07	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64290 AT1G64295 AT2G05360 AT5G41720
fragaria_vesca	FvH4_1g08161 FvH4_1g08170
malus_domestica	MD02G1086300.v1.1 MD15G1214100.v1.1 MD15G1214200.v1.1
prunus_persica	Prupe.7G202800_v2.0.a1 Prupe.7G202900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094241
rosa_laevigata	RLG00000016469 RLG00000016470 RLG00000016636
rosa_multiflora	Rmu_sc0002193.1_g000015 Rmu_sc0002193.1_g000016 Rmu_sc0006198.1_g000007 Rmu_sc0006198.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147330 Rroxscaffold_2G00147340
rosa_rugosa	Rorug02G0042300 Rorug02G0042400
rosa_samantha	Rh2AG089900 Rh2AG090000 Rh2BG090000 Rh2CG092500 Rh2DG088800 Rh6BG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	460
AccB7I	CCANNNNNTGG	1 cut(s)	66
AciI	CCGC	2 cut(s)	315, 413
AclWI	GGATC	3 cut(s)	560, 560, 573
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	5 cut(s)	30, 149, 200, 295, 561
AfiI	CCNNNNNNNGG	3 cut(s)	66, 234, 755
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	256, 627, 742, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	5 cut(s)	233, 266, 291, 384, 496
AluI	AGCT	5 cut(s)	233, 266, 291, 384, 496
Alw21I	GWGCWC	2 cut(s)	322, 410
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	3 cut(s)	560, 560, 573
Ama87I	CYCGRG	2 cut(s)	234, 690
ApaLI	GTGCAC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	118, 431
AvaI	CYCGRG	2 cut(s)	234, 690
AvaII	GGWCC	1 cut(s)	746
AxyI	CCTNAGG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	322, 410
BccI	CCATC	1 cut(s)	661
BfaI	CTAG	2 cut(s)	5, 677
BglII	AGATCT	1 cut(s)	702
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	2 cut(s)	234, 690
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	2 cut(s)	487, 567
BmsI	GCATC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	4 cut(s)	60, 273, 451, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 234, 755
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	60, 273, 451, 489
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	66, 234, 755
BseNI	ACTGG	1 cut(s)	567
BseSI	GKGCMC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	322, 410
BsiHKCI	CYCGRG	2 cut(s)	234, 690
BslI	CCNNNNNNNGG	3 cut(s)	66, 234, 755
BsoBI	CYCGRG	2 cut(s)	234, 690
Bsp1286I	GDGCHC	3 cut(s)	322, 410, 488
Bsp1407I	TGTACA	1 cut(s)	293
Bsp143I	GATC	5 cut(s)	131, 421, 552, 565, 702
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	2 cut(s)	315, 413
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	487, 567
BspPI	GGATC	3 cut(s)	560, 560, 573
BsrGI	TGTACA	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	4 cut(s)	60, 273, 451, 489
BssMI	GATC	5 cut(s)	131, 421, 552, 565, 702
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	4 cut(s)	60, 273, 451, 489
Bst4CI	ACNGT	3 cut(s)	106, 249, 405
BstACI	GRCGYC	1 cut(s)	457
BstAUI	TGTACA	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	50, 313
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	134, 424, 555, 568, 705
BstMBI	GATC	5 cut(s)	131, 421, 552, 565, 702
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 317, 581
BstSLI	GKGCMC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	565, 702
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	2 cut(s)	565, 702
Bsu36I	CCTNAGG	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	50, 313
CciI	TCATGA	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	746
Csp6I	GTAC	5 cut(s)	29, 148, 199, 294, 560
CviAII	CATG	5 cut(s)	240, 368, 465, 490, 613
CviQI	GTAC	5 cut(s)	29, 148, 199, 294, 560
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	5 cut(s)	133, 423, 554, 567, 704
DpnII	GATC	5 cut(s)	131, 421, 552, 565, 702
Eco130I	CCWWGG	4 cut(s)	60, 273, 451, 489
Eco24I	GRGCYC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	746
Eco81I	CCTNAGG	1 cut(s)	206
Eco88I	CYCGRG	2 cut(s)	234, 690
EcoT14I	CCWWGG	4 cut(s)	60, 273, 451, 489
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	4 cut(s)	60, 273, 451, 489
FaeI	CATG	5 cut(s)	243, 371, 468, 493, 616
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 444, 476
FatI	CATG	5 cut(s)	239, 367, 464, 489, 612
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	488
FspBI	CTAG	2 cut(s)	5, 677
GsaI	CCCAGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	5 cut(s)	243, 371, 468, 493, 616
HinfI	GANTC	3 cut(s)	224, 354, 722
HphI	GGTGA	2 cut(s)	118, 431
Hpy166II	GTNNAC	4 cut(s)	29, 296, 320, 445
Hpy188I	TCNGA	5 cut(s)	87, 161, 169, 340, 721
Hpy188III	TCNNGA	3 cut(s)	286, 613, 677
Hpy8I	GTNNAC	4 cut(s)	29, 296, 320, 445
HpyAV	CCTTC	3 cut(s)	292, 470, 748
HpyCH4III	ACNGT	3 cut(s)	106, 249, 405
HpyCH4IV	ACGT	2 cut(s)	25, 457
HpyCH4V	TGCA	7 cut(s)	48, 320, 398, 464, 584, 594, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 317, 581
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	25, 457
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	5 cut(s)	243, 371, 468, 493, 616
Kzo9I	GATC	5 cut(s)	131, 421, 552, 565, 702
LmnI	GCTCC	3 cut(s)	70, 491, 493
LpnPI	CCDG	5 cut(s)	312, 325, 370, 548, 713
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	5, 677
MaeII	ACGT	2 cut(s)	25, 457
MaeIII	GTNAC	2 cut(s)	13, 730
MalI	GATC	5 cut(s)	133, 423, 554, 567, 704
MboI	GATC	5 cut(s)	131, 421, 552, 565, 702
MboII	GAAGA	2 cut(s)	386, 389
MflI	RGATCY	2 cut(s)	565, 702
MhlI	GDGCHC	3 cut(s)	322, 410, 488
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	2 cut(s)	331, 363
MnlI	CCTC	6 cut(s)	42, 87, 475, 502, 611, 673
MseI	TTAA	4 cut(s)	119, 143, 639, 708
MslI	CAYNNNNRTG	1 cut(s)	403
MwoI	GCNNNNNNNGC	3 cut(s)	308, 317, 581
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	5 cut(s)	131, 421, 552, 565, 702
NlaIII	CATG	5 cut(s)	243, 371, 468, 493, 616
NlaIV	GGNNCC	2 cut(s)	487, 567
NmeAIII	GCCGAG	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	690
PagI	TCATGA	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	224, 722
PflMI	CCANNNNNTGG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	487, 567
PspPI	GGNCC	1 cut(s)	746
PspXI	VCTCGAGB	1 cut(s)	690
PsuI	RGATCY	2 cut(s)	565, 702
RsaI	GTAC	5 cut(s)	30, 149, 200, 295, 561
RsaNI	GTAC	5 cut(s)	29, 148, 199, 294, 560
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	4 cut(s)	119, 143, 639, 708
Sau3AI	GATC	5 cut(s)	131, 421, 552, 565, 702
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	322, 410, 488
SfaNI	GCATC	1 cut(s)	268
Sfr274I	CTCGAG	1 cut(s)	690
SinI	GGWCC	1 cut(s)	746
SlaI	CTCGAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	286, 690
SmoI	CTYRAG	2 cut(s)	286, 690
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	2 cut(s)	315, 413
SspI	AATATT	2 cut(s)	185, 393
SspMI	CTAG	2 cut(s)	5, 677
StyI	CCWWGG	4 cut(s)	60, 273, 451, 489
TaaI	ACNGT	3 cut(s)	106, 249, 405
TaiI	ACGT	2 cut(s)	28, 460
TaqI	TCGA	1 cut(s)	691
TasI	AATT	1 cut(s)	111
TatI	WGTACW	2 cut(s)	198, 293
TfiI	GAWTC	2 cut(s)	224, 722
Tru1I	TTAA	4 cut(s)	119, 143, 639, 708
Tru9I	TTAA	4 cut(s)	119, 143, 639, 708
TspDTI	ATGAA	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	746
XbaI	TCTAGA	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	690
XspI	CTAG	2 cut(s)	5, 677
ZraI	GACGTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.