Rh6BG131300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005421
Physical Location & Seq
Forward (+)
20432099 .. 20434981
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG131300.1

Sequence Viewer

Length: 360 bp
ATGGATGCGTATCAATCCCTTCCAATAATTTTGCAGAGGGTGTATCTTTTGTGGGGAGCGAATGACAAGATCTTCGACATAGAATCTGCAAGCAACCTCAACAAAGTGATTCGCGGGCTTCCAGATTGGTGGGGTGTGGTCGGAGTAGGTTGGGTTCGTGGTGGCGTGGCTCGGAGATCGTACGCTTCCATGGCAAGGCAAGGATGGAAGGATGATGCTGGGGGATCGTGGTTACTGCAGAGGGGATGTGCTCTGTCCAGATCAGTCCGATCTGGATTGGGTCTCTTTGAATTGATCTGGGTATGGGTTTGTTCGGCTGGGTTGGAGTGGTTCCATGGTTCGGACGGGAGGATGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.27

Weight (kDa)

9.18

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 232
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 195, 340
AgsI TTSAA 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 354
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Bbv12I GWGCWC 1 cut(s) 253
BccI CCATC 2 cut(s) 198, 346
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 236
BglII AGATCT 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 189, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 340
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 189, 334
BseGI GGATG 5 cut(s) 10, 209, 217, 251, 357
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 195, 340
BseYI CCCAGC 2 cut(s) 218, 317
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 253
BsiWI CGTACG 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 195, 340
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 356
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 6 cut(s) 69, 176, 224, 260, 269, 294
Bsp19I CCATGG 2 cut(s) 189, 334
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 356
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 189, 334
BssMI GATC 6 cut(s) 69, 176, 224, 260, 269, 294
BssT1I CCWWGG 2 cut(s) 189, 334
BstC8I GCNNGC 2 cut(s) 91, 116
BstDSI CCRYGG 2 cut(s) 189, 334
BstF5I GGATG 5 cut(s) 10, 209, 217, 251, 357
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 6 cut(s) 72, 179, 227, 263, 272, 297
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 6 cut(s) 69, 176, 224, 260, 269, 294
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 236
BstUI CGCG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 129
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 2 cut(s) 189, 334
BtsCI GGATG 5 cut(s) 10, 209, 217, 251, 357
Cac8I GCNNGC 2 cut(s) 91, 116
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 190, 335
CviJI RGCY 4 cut(s) 118, 170, 317, 356
CviKI_1 RGCY 4 cut(s) 118, 170, 317, 356
CviQI GTAC 1 cut(s) 181
DpnI GATC 6 cut(s) 71, 178, 226, 262, 271, 296
DpnII GATC 6 cut(s) 69, 176, 224, 260, 269, 294
Eco130I CCWWGG 2 cut(s) 189, 334
Eco31I GGTCTC 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 189, 334
ErhI CCWWGG 2 cut(s) 189, 334
FaeI CATG 2 cut(s) 193, 338
FaiI YATR 4 cut(s) 80, 191, 304, 336
FatI CATG 2 cut(s) 189, 334
FauI CCCGC 1 cut(s) 107
FokI GGATG 4 cut(s) 17, 216, 224, 258
GsaI CCCAGC 2 cut(s) 222, 321
HaeIII GGCC 1 cut(s) 356
Hin1II CATG 2 cut(s) 193, 338
HinfI GANTC 2 cut(s) 83, 109
Hpy188I TCNGA 4 cut(s) 143, 174, 269, 343
Hpy188III TCNNGA 3 cut(s) 122, 258, 273
HpyAV CCTTC 2 cut(s) 29, 202
HpyCH4V TGCA 3 cut(s) 34, 89, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
Hsp92II CATG 2 cut(s) 193, 338
Kzo9I GATC 6 cut(s) 69, 176, 224, 260, 269, 294
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 135, 204, 258, 271, 283, 303
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 231
MalI GATC 6 cut(s) 71, 178, 226, 262, 271, 296
MboI GATC 6 cut(s) 69, 176, 224, 260, 269, 294
MboII GAAGA 1 cut(s) 64
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 27, 290
MmeI TCCRAC 2 cut(s) 121, 303
MnlI CCTC 4 cut(s) 30, 107, 234, 342
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 191
NcoI CCATGG 2 cut(s) 189, 334
NdeII GATC 6 cut(s) 69, 176, 224, 260, 269, 294
NlaIII CATG 2 cut(s) 193, 338
NlaIV GGNNCC 1 cut(s) 332
PfeI GAWTC 2 cut(s) 83, 109
Pfl23II CGTACG 1 cut(s) 180
PspFI CCCAGC 2 cut(s) 218, 317
PspLI CGTACG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 332
PsrI GAACNNNNNNTAC 2 cut(s) 138, 170
PstI CTGCAG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
Sau3AI GATC 6 cut(s) 69, 176, 224, 260, 269, 294
SduI GDGCHC 1 cut(s) 253
SetI ASST 2 cut(s) 99, 151
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 27, 290
SsiI CCGC 1 cut(s) 114
StyI CCWWGG 2 cut(s) 189, 334
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 27, 290
TfiI GAWTC 2 cut(s) 83, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.