Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Forward (+)

25561638 .. 25564272

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAAAACAAAATCGCGCCGTTTAGTTACAGCGGAAGCTCCGCCGGAAATTCATCCAGTGGCGGCGTCGTTTCGTCGTCTCTCTACTCTGATCAACTCTACAAGTCGACTCGCAACATAATGCAACAGCGTCAAGATATGGTGAATCGCGAGGCGTTGTGTTACACGCGTCTCCATGAGGCTTCGCTTGAAGCAGAAGCGCTTCGTCTAGAGAACACTGAACTCCGATCGATGAATCTTCGTCTCAAGAATGAGCTCAACAGTCTCATCAGATCTTCGATCCAGAACCGATTTGATCATCGATCTCCGCTTCGGATGCTTAGCAATCTTTCGATCGGAGGTAATGACGCCGACGAAGTGGAGAATCAGAACCGTACGGTTAATCGCGATGACGTCAATGATAAGAGTCCGACGAGTGTTATGGAGAATGAGGATCTGAATCGCTCTTCGCTTCCAAAGAGCATCTCTGTGAGATCTAATGGCTACTCTAAGGCAAGTCAGGGAGGTGGTGGTGCGGCTGCTCAAAGTGGAAAACCTCGTGGAACCGTCACTAAGCCTGGGACTTGTGGTCAAGTCAGTACTACGCAGAAGGTGTATGTGCGAGGAGGAGGGAAGAAAGAAGATCAGGAGGAAGAGATAGAAGTGGAGGTGTACAATCAAGGGATGACAAAGACAGAGCTGTGCAACAAATGGCAAGAGACAGGGACATGCCCATATGGTGACCATTGCCAGTTCGCTCACGGCATTAAGGAACTCCGTCCAGTGATCCGCCATCCCCGTTACAAGACTGAGGTTTGCAGAATGGTTCTTGCTGGTGATAACTGTCCTTATGGTCACCGTTGCCACTTCCGCCACTCACTATCTGAGCAGGAGAAGCTCGTTGCTGCTGGTTTCAAACCCAAGTCATCCCTCAAGCTGATCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

308

Amino Acids

34.23

Weight (kDa)

8.82

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	224 - 248	5.2e-12	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	228 - 247	1.4e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	107
AccII	CGCG	4 cut(s)	17, 150, 169, 387
AciI	CCGC	7 cut(s)	33, 42, 63, 308, 515, 769, 850
AclWI	GGATC	3 cut(s)	274, 441, 760
AcsI	RAATTY	1 cut(s)	49
AcyI	GRCGYC	3 cut(s)	66, 348, 393
AfaI	GTAC	3 cut(s)	376, 580, 653
AfeI	AGCGCT	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	191, 895
AhdI	GACNNNNNGTC	1 cut(s)	567
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	5 cut(s)	39, 256, 679, 877, 916
AluI	AGCT	5 cut(s)	39, 256, 679, 877, 916
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	5 cut(s)	84, 176, 248, 269, 692
AlwI	GGATC	3 cut(s)	274, 441, 760
Aor51HI	AGCGCT	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	518, 884
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	19, 202
AsuHPI	GGTGA	4 cut(s)	154, 731, 827, 827
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	505, 871
BccI	CCATC	1 cut(s)	780
BceAI	ACGGC	2 cut(s)	4, 757
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	3 cut(s)	91, 295, 918
BcoDI	GTCTC	5 cut(s)	84, 176, 248, 269, 692
BfaI	CTAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	203
BglII	AGATCT	2 cut(s)	272, 473
BisI	GCNGC	4 cut(s)	64, 516, 519, 885
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	4 cut(s)	65, 517, 520, 886
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	558
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	2 cut(s)	306, 471
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	230, 896
Bsa29I	ATCGAT	2 cut(s)	230, 301
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	3 cut(s)	66, 348, 393
BsaJI	CCNNGG	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	57, 730, 761
Bse3DI	GCAATG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	558
BseCI	ATCGAT	2 cut(s)	230, 301
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	5 cut(s)	53, 321, 669, 772, 905
BseJI	GATNNNNATC	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	2 cut(s)	780, 855
BseNI	ACTGG	3 cut(s)	57, 730, 761
BseRI	GAGGAG	2 cut(s)	618, 621
BseXI	GCAGC	2 cut(s)	505, 871
Bsh1236I	CGCG	4 cut(s)	17, 150, 169, 387
Bsh1285I	CGRYCG	2 cut(s)	230, 336
BshVI	ATCGAT	2 cut(s)	230, 301
BsiEI	CGRYCG	2 cut(s)	230, 336
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	45
BsiWI	CGTACG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	574, 718
BsmAI	GTCTC	5 cut(s)	84, 176, 248, 269, 692
BsmBI	CGTCTC	3 cut(s)	84, 176, 248
BsmFI	GGGAC	2 cut(s)	574, 718
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	651
Bsp1720I	GCTNAGC	1 cut(s)	320
Bsp68I	TCGCGA	2 cut(s)	150, 387
BspACI	CCGC	7 cut(s)	33, 42, 63, 308, 515, 769, 850
BspCNI	CTCAG	2 cut(s)	781, 856
BspDI	ATCGAT	2 cut(s)	230, 301
BspFNI	CGCG	4 cut(s)	17, 150, 169, 387
BspLI	GGNNCC	1 cut(s)	544
BspPI	GGATC	3 cut(s)	274, 441, 760
BspQI	GCTCTTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	724
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	3 cut(s)	57, 730, 761
BssECI	CCNNGG	1 cut(s)	557
BssNI	GRCGYC	3 cut(s)	66, 348, 393
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	6 cut(s)	263, 374, 379, 547, 824, 839
Bst6I	CTCTTC	2 cut(s)	451, 627
BstACI	GRCGYC	3 cut(s)	66, 348, 393
BstAUI	TGTACA	1 cut(s)	651
BstDEI	CTNAG	5 cut(s)	320, 489, 552, 789, 864
BstEII	GGTNACC	2 cut(s)	719, 833
BstF5I	GGATG	5 cut(s)	53, 321, 669, 772, 905
BstFNI	CGCG	4 cut(s)	17, 150, 169, 387
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	19, 202
BstMAI	GTCTC	5 cut(s)	84, 176, 248, 269, 692
BstMCI	CGRYCG	2 cut(s)	230, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 849, 874
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	711
BstPI	GGTNACC	2 cut(s)	719, 833
BstSCI	CCNGG	1 cut(s)	556
BstUI	CGCG	4 cut(s)	17, 150, 169, 387
BstV1I	GCAGC	2 cut(s)	505, 871
BstX2I	RGATCY	3 cut(s)	272, 433, 473
BstYI	RGATCY	3 cut(s)	272, 433, 473
Bsu15I	ATCGAT	2 cut(s)	230, 301
BsuTUI	ATCGAT	2 cut(s)	230, 301
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	5 cut(s)	53, 321, 669, 772, 905
BtsIMutI	CAGTG	3 cut(s)	64, 216, 768
BtuMI	TCGCGA	2 cut(s)	150, 387
CfoI	GCGC	2 cut(s)	19, 202
ClaI	ATCGAT	2 cut(s)	230, 301
CseI	GACGC	4 cut(s)	55, 119, 158, 356
Csp6I	GTAC	3 cut(s)	375, 579, 652
CviAII	CATG	3 cut(s)	176, 708, 924
CviJI	RGCY	9 cut(s)	39, 182, 256, 483, 518, 556, 679, 877, 916
CviKI_1	RGCY	9 cut(s)	39, 182, 256, 483, 518, 556, 679, 877, 916
CviQI	GTAC	3 cut(s)	375, 579, 652
DdeI	CTNAG	5 cut(s)	320, 489, 552, 789, 864
DriI	GACNNNNNGTC	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	451, 627
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	2 cut(s)	451, 627
EciI	GGCGGA	3 cut(s)	31, 758, 839
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco47III	AGCGCT	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	256
Eco91I	GGTNACC	2 cut(s)	719, 833
EcoICRI	GAGCTC	1 cut(s)	256
EcoO65I	GGTNACC	2 cut(s)	719, 833
EcoRII	CCWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	3 cut(s)	84, 176, 248
FaeI	CATG	3 cut(s)	179, 711, 927
FaqI	GGGAC	2 cut(s)	574, 718
FatI	CATG	3 cut(s)	175, 707, 923
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	3 cut(s)	91, 295, 918
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	4 cut(s)	64, 516, 519, 885
FokI	GGATG	5 cut(s)	40, 328, 676, 759, 892
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	64, 516, 519, 885
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	2 cut(s)	18, 201
GluI	GCNGC	4 cut(s)	64, 516, 519, 885
HaeII	RGCGCY	1 cut(s)	203
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	4 cut(s)	55, 119, 158, 356
HhaI	GCGC	2 cut(s)	19, 202
Hin1I	GRCGYC	3 cut(s)	66, 348, 393
Hin1II	CATG	3 cut(s)	179, 711, 927
Hin6I	GCGC	2 cut(s)	17, 200
HinP1I	GCGC	2 cut(s)	17, 200
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	6 cut(s)	109, 145, 235, 364, 406, 439
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	4 cut(s)	154, 731, 827, 827
Hpy166II	GTNNAC	2 cut(s)	108, 652
Hpy188I	TCNGA	9 cut(s)	91, 227, 272, 315, 338, 369, 411, 438, 865
Hpy188III	TCNNGA	7 cut(s)	134, 149, 209, 247, 283, 386, 626
Hpy8I	GTNNAC	2 cut(s)	108, 652
Hpy99I	CGWCG	4 cut(s)	71, 79, 356, 415
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	6 cut(s)	263, 374, 379, 547, 824, 839
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	124, 684, 798
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 849, 874
HpyF3I	CTNAG	5 cut(s)	320, 489, 552, 789, 864
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	3 cut(s)	66, 348, 393
Hsp92II	CATG	3 cut(s)	179, 711, 927
HspAI	GCGC	2 cut(s)	17, 200
Ksp22I	TGATCA	3 cut(s)	91, 295, 918
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	2 cut(s)	505, 871
LweI	GCATC	2 cut(s)	306, 471
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	6 cut(s)	26, 161, 547, 719, 779, 833
MboII	GAAGA	6 cut(s)	230, 267, 438, 625, 632, 644
MflI	RGATCY	3 cut(s)	272, 433, 473
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	49
MluI	ACGCGT	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	103, 415
MmeI	TCCRAC	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	2 cut(s)	381, 747
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	4 cut(s)	17, 150, 169, 387
MwoI	GCNNNNNNNGC	3 cut(s)	316, 849, 874
NdeI	CATATG	1 cut(s)	715
NlaIII	CATG	3 cut(s)	179, 711, 927
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	3 cut(s)	547, 719, 833
NruI	TCGCGA	2 cut(s)	150, 387
NspI	RCATGY	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	145, 235, 364, 439
Pfl23II	CGTACG	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	65, 517, 520, 886
Ple19I	CGATCG	2 cut(s)	230, 336
PleI	GAGTC	2 cut(s)	103, 414
PpsI	GAGTC	2 cut(s)	103, 414
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	556
PspEI	GGTNACC	2 cut(s)	719, 833
PspGI	CCWGG	1 cut(s)	556
PspLI	CGTACG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	544
PsuI	RGATCY	3 cut(s)	272, 433, 473
PvuI	CGATCG	2 cut(s)	230, 336
RruI	TCGCGA	2 cut(s)	150, 387
RsaI	GTAC	3 cut(s)	376, 580, 653
RsaNI	GTAC	3 cut(s)	375, 579, 652
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	2 cut(s)	381, 747
SatI	GCNGC	4 cut(s)	64, 516, 519, 885
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	2 cut(s)	103, 415
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	2 cut(s)	306, 471
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	245, 911
SmoI	CTYRAG	2 cut(s)	245, 911
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	7 cut(s)	33, 42, 63, 308, 515, 769, 850
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	6 cut(s)	263, 374, 379, 547, 824, 839
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	5 cut(s)	107, 230, 278, 301, 332
TasI	AATT	1 cut(s)	49
TatI	WGTACW	2 cut(s)	578, 651
TauI	GCSGC	2 cut(s)	66, 518
TfiI	GAWTC	4 cut(s)	145, 235, 364, 439
Tru1I	TTAA	2 cut(s)	381, 747
Tru9I	TTAA	2 cut(s)	381, 747
TscAI	CASTG	3 cut(s)	64, 223, 768
TseFI	GTSAC	3 cut(s)	547, 719, 833
TseI	GCWGC	2 cut(s)	518, 884
Tsp45I	GTSAC	3 cut(s)	547, 719, 833
TspDTI	ATGAA	2 cut(s)	42, 248
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	3 cut(s)	64, 223, 768
XapI	RAATTY	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	208
XceI	RCATGY	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	209
ZraI	GACGTC	1 cut(s)	394
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.