RLG00000006696

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
9716543 .. 9718222
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006696

Sequence Viewer

Length: 951 bp
ATGTCATCATCGCAGCCTCAACCGTACGGCGGTGTTTACAGCTCCGTCTACTCCTCCTCGATCTTCGGTCCAACGCCTTCTTCCGTCTCACCTTACGGCGTCCAATCAAACTCCGACACGTCGCAGGCCTACCGCAACAAACTCTACCAGTCTCTGCTGGTCCAAAACCGCCAGGAGATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGAAATCGTCAACGGAATTCGCGGCCTGTCAATTGACGGCAAGTCGTCGGCTCAAGAGGAGGAGGAATTGAGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAAAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTGACCGCTGCTACTACCGCCGCCGCTCGGACTCGGACCGCGGCCAGATCTCGAATCGCCAAGGCAATCAGTGCTTCACAAAAGGTGTACGTTCAAGGAGGGAAGAAAGAGGAGGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGCGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCATCGCTGCCATTTTCGCCACGCGCTCACTGAGGAGGAGAAGGAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCAATCAGGTAA

Protein Analysis

317

Amino Acids

35.14

Weight (kDa)

7.65

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 233 - 258 8.1e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 661
AccB7I CCANNNNNTGG 1 cut(s) 178
AccBSI CCGCTC 1 cut(s) 572
AccI GTMKAC 1 cut(s) 48
AccII CGCG 4 cut(s) 390, 587, 808, 887
AcoI YGGCCR 2 cut(s) 588, 862
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 2 cut(s) 26, 635
AfiI CCNNNNNNNGG 5 cut(s) 29, 178, 217, 220, 573
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 6 cut(s) 345, 371, 641, 671, 685, 700
AhdI GACNNNNNGTC 1 cut(s) 409
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 171, 687
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 7 cut(s) 42, 283, 338, 348, 538, 784, 910
AluI AGCT 7 cut(s) 42, 283, 338, 348, 538, 784, 910
Alw26I GTCTC 3 cut(s) 91, 156, 305
AlwNI CAGNNNCTG 2 cut(s) 154, 198
AoxI GGCC 6 cut(s) 126, 391, 465, 588, 862, 938
ApeKI GCWGC 5 cut(s) 13, 496, 554, 784, 870
ApoI RAATTY 1 cut(s) 384
AspLEI GCGC 4 cut(s) 210, 789, 810, 889
AspS9I GGNCC 4 cut(s) 68, 160, 519, 582
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 6 cut(s) 81, 526, 559, 746, 805, 857
AsuNHI GCTAGC 1 cut(s) 838
AvaII GGWCC 4 cut(s) 68, 160, 519, 582
BalI TGGCCA 1 cut(s) 864
BanI GGYRCC 1 cut(s) 661
BauI CACGAG 1 cut(s) 215
BbvI GCAGC 5 cut(s) 25, 483, 541, 771, 857
BccI CCATC 3 cut(s) 172, 326, 873
BceAI ACGGC 7 cut(s) 43, 112, 231, 349, 421, 541, 787
BciT130I CCWGG 2 cut(s) 173, 689
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 3 cut(s) 91, 156, 305
BfaI CTAG 1 cut(s) 839
BfmI CTRYAG 1 cut(s) 826
BfoI RGCGCY 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 937
BglII AGATCT 1 cut(s) 593
Bme1390I CCNGG 3 cut(s) 173, 689, 791
Bme18I GGWCC 4 cut(s) 68, 160, 519, 582
BmeRI GACNNNNNGTC 1 cut(s) 409
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 4 cut(s) 68, 160, 519, 582
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 3 cut(s) 173, 689, 791
BmtI GCTAGC 1 cut(s) 842
BoxI GACNNNNGTC 1 cut(s) 821
BpmI CTGGAG 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 585, 606, 688, 819
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 178, 217, 220, 573
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 2 cut(s) 148, 678
BseBI CCWGG 2 cut(s) 173, 689
BseDI CCNNGG 4 cut(s) 585, 606, 688, 819
BseGI GGATG 2 cut(s) 306, 318
BseLI CCNNNNNNNGG 5 cut(s) 29, 178, 217, 220, 573
BseMII CTCAG 2 cut(s) 310, 885
BseNI ACTGG 2 cut(s) 148, 678
BseRI GAGGAG 9 cut(s) 43, 46, 293, 440, 443, 671, 794, 911, 914
BseXI GCAGC 5 cut(s) 25, 483, 541, 771, 857
BseYI CCCAGC 1 cut(s) 932
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 4 cut(s) 390, 587, 808, 887
BshFI GGCC 6 cut(s) 128, 393, 467, 590, 864, 940
BshNI GGYRCC 1 cut(s) 661
BsiSI CCGG 3 cut(s) 545, 791, 843
BsiWI CGTACG 1 cut(s) 24
BslI CCNNNNNNNGG 5 cut(s) 29, 178, 217, 220, 573
BsmAI GTCTC 3 cut(s) 91, 156, 305
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 6 cut(s) 128, 393, 467, 590, 864, 940
Bsp143I GATC 4 cut(s) 60, 330, 442, 593
BspANI GGCC 6 cut(s) 128, 393, 467, 590, 864, 940
BspCNI CTCAG 2 cut(s) 309, 886
BspFNI CGCG 4 cut(s) 390, 587, 808, 887
BspLI GGNNCC 1 cut(s) 663
BspMAI CTGCAG 1 cut(s) 830
BspOI GCTAGC 1 cut(s) 842
BspQI GCTCTTC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 661
BsrBI CCGCTC 1 cut(s) 572
BsrFI RCCGGY 1 cut(s) 842
BsrI ACTGG 2 cut(s) 148, 678
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 4 cut(s) 585, 606, 688, 819
BssMI GATC 4 cut(s) 60, 330, 442, 593
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 173, 689
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 456, 497
BstACI GRCGYC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 617
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 126, 840, 912, 938
BstDEI CTNAG 2 cut(s) 296, 894
BstDSI CCRYGG 1 cut(s) 585
BstEII GGTNACC 1 cut(s) 547
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 306, 318
BstFNI CGCG 4 cut(s) 390, 587, 808, 887
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 4 cut(s) 210, 789, 810, 889
BstKTI GATC 4 cut(s) 63, 333, 445, 596
BstMAI GTCTC 3 cut(s) 91, 156, 305
BstMBI GATC 4 cut(s) 60, 330, 442, 593
BstNI CCWGG 2 cut(s) 173, 689
BstPAI GACNNNNGTC 1 cut(s) 821
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 3 cut(s) 171, 687, 789
BstSFI CTRYAG 1 cut(s) 826
BstUI CGCG 4 cut(s) 390, 587, 808, 887
BstV1I GCAGC 5 cut(s) 25, 483, 541, 771, 857
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BsuRI GGCC 6 cut(s) 128, 393, 467, 590, 864, 940
BtgI CCRYGG 1 cut(s) 585
BtgZI GCGATG 1 cut(s) 851
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 306, 318
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 3 cut(s) 622, 754, 891
Cac8I GCNNGC 4 cut(s) 126, 840, 912, 938
CaiI CAGNNNCTG 2 cut(s) 154, 198
CfoI GCGC 4 cut(s) 210, 789, 810, 889
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 4 cut(s) 68, 160, 519, 582
Cfr42I CCGCGG 1 cut(s) 588
CpoI CGGWCCG 1 cut(s) 582
CseI GACGC 2 cut(s) 88, 245
Csp6I GTAC 2 cut(s) 25, 634
CspI CGGWCCG 1 cut(s) 582
CviQI GTAC 2 cut(s) 25, 634
DdeI CTNAG 2 cut(s) 296, 894
DpnI GATC 4 cut(s) 62, 332, 444, 595
DpnII GATC 4 cut(s) 60, 330, 442, 593
DraIII CACNNNGTG 1 cut(s) 775
DriI GACNNNNNGTC 1 cut(s) 409
EaeI YGGCCR 2 cut(s) 588, 862
Eam1104I CTCTTC 2 cut(s) 456, 497
Eam1105I GACNNNNNGTC 1 cut(s) 409
EarI CTCTTC 2 cut(s) 456, 497
EciI GGCGGA 2 cut(s) 233, 239
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 128
Eco47I GGWCC 4 cut(s) 68, 160, 519, 582
Eco57I CTGAAG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 547
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 171, 687
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 91
FaiI YATR 3 cut(s) 509, 859, 861
FauI CCCGC 1 cut(s) 813
FauNDI CATATG 1 cut(s) 859
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 293, 305
FspBI CTAG 1 cut(s) 839
GlaI GCGC 4 cut(s) 209, 788, 809, 888
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 6 cut(s) 128, 393, 467, 590, 864, 940
HapII CCGG 3 cut(s) 545, 791, 843
HgaI GACGC 2 cut(s) 88, 245
HhaI GCGC 4 cut(s) 210, 789, 810, 889
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 4 cut(s) 208, 787, 808, 887
HinP1I GCGC 4 cut(s) 208, 787, 808, 887
HincII GTYRAC 3 cut(s) 184, 274, 379
HindII GTYRAC 3 cut(s) 184, 274, 379
HindIII AAGCTT 2 cut(s) 336, 536
HinfI GANTC 5 cut(s) 448, 577, 600, 728, 796
HpaII CCGG 3 cut(s) 545, 791, 843
HphI GGTGA 6 cut(s) 81, 526, 559, 746, 805, 857
Hpy166II GTNNAC 6 cut(s) 37, 49, 184, 274, 379, 634
Hpy188I TCNGA 5 cut(s) 115, 447, 453, 576, 582
Hpy188III TCNNGA 4 cut(s) 322, 422, 597, 700
Hpy8I GTNNAC 6 cut(s) 37, 49, 184, 274, 379, 634
Hpy99I CGWCG 5 cut(s) 124, 239, 281, 418, 457
HpyAV CCTTC 2 cut(s) 87, 898
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 5 cut(s) 119, 270, 276, 531, 636
HpyCH4V TGCA 3 cut(s) 355, 714, 828
HpyF3I CTNAG 2 cut(s) 296, 894
HpySE526I ACGT 5 cut(s) 119, 270, 276, 531, 636
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 4 cut(s) 208, 787, 808, 887
KspI CCGCGG 1 cut(s) 588
Kzo9I GATC 4 cut(s) 60, 330, 442, 593
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 3 cut(s) 47, 781, 907
Lsp1109I GCAGC 5 cut(s) 25, 483, 541, 771, 857
MaeI CTAG 1 cut(s) 839
MaeII ACGT 5 cut(s) 119, 270, 276, 531, 636
MaeIII GTNAC 2 cut(s) 547, 734
MalI GATC 4 cut(s) 62, 332, 444, 595
MbiI CCGCTC 1 cut(s) 572
MboI GATC 4 cut(s) 60, 330, 442, 593
MboII GAAGA 6 cut(s) 55, 72, 333, 473, 514, 661
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 1 cut(s) 593
MlsI TGGCCA 1 cut(s) 864
MluCI AATT 4 cut(s) 384, 399, 434, 761
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 3 cut(s) 457, 571, 737
MmeI TCCRAC 4 cut(s) 95, 138, 476, 546
Mox20I TGGCCA 1 cut(s) 864
MscI TGGCCA 1 cut(s) 864
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 2 cut(s) 554, 587
MspI CCGG 3 cut(s) 545, 791, 843
MspR9I CCNGG 3 cut(s) 173, 689, 791
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 2 cut(s) 173, 689
MvnI CGCG 4 cut(s) 390, 587, 808, 887
NciI CCSGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 859
NdeII GATC 4 cut(s) 60, 330, 442, 593
NheI GCTAGC 1 cut(s) 838
NlaIV GGNNCC 1 cut(s) 663
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 547, 734
PceI AGGCCT 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 600, 796
Pfl23II CGTACG 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 178
PleI GAGTC 3 cut(s) 456, 571, 736
PpsI GAGTC 3 cut(s) 456, 571, 736
Ppu21I YACGTR 1 cut(s) 532
PshAI GACNNNNGTC 1 cut(s) 821
Psp6I CCWGG 2 cut(s) 171, 687
PspEI GGTNACC 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 2 cut(s) 171, 687
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 4 cut(s) 68, 160, 519, 582
PstI CTGCAG 1 cut(s) 830
PstNI CAGNNNCTG 2 cut(s) 154, 198
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 2 cut(s) 26, 635
RsaNI GTAC 2 cut(s) 25, 634
RseI CAYNNNNRTG 1 cut(s) 512
Rsr2I CGGWCCG 1 cut(s) 582
RsrII CGGWCCG 1 cut(s) 582
SacII CCGCGG 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 497
Sau3AI GATC 4 cut(s) 60, 330, 442, 593
Sau96I GGNCC 4 cut(s) 68, 160, 519, 582
SchI GAGTC 3 cut(s) 457, 571, 737
ScrFI CCNGG 3 cut(s) 173, 689, 791
SfcI CTRYAG 1 cut(s) 826
Sfr303I CCGCGG 1 cut(s) 588
SgrBI CCGCGG 1 cut(s) 588
SinI GGWCC 4 cut(s) 68, 160, 519, 582
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 4 cut(s) 384, 399, 434, 761
SseBI AGGCCT 1 cut(s) 128
SspMI CTAG 1 cut(s) 839
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 3 cut(s) 171, 687, 789
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 5 cut(s) 122, 273, 279, 534, 639
TaqI TCGA 4 cut(s) 59, 279, 333, 598
TaqII GACCGA 2 cut(s) 56, 833
TasI AATT 4 cut(s) 384, 399, 434, 761
TauI GCSGC 5 cut(s) 224, 393, 569, 572, 590
TfiI GAWTC 2 cut(s) 600, 796
TscAI CASTG 3 cut(s) 622, 761, 898
TseFI GTSAC 2 cut(s) 547, 734
TseI GCWGC 5 cut(s) 13, 496, 554, 784, 870
Tsp45I GTSAC 2 cut(s) 547, 734
TspGWI ACGGA 3 cut(s) 34, 73, 396
TspRI CASTG 3 cut(s) 622, 761, 898
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 4 cut(s) 68, 160, 519, 582
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.