Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

56344774 .. 56345493

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCAAAACGACGTCGCCTACTCCACCGCCTCAGCTCGCATCGGAACCTCCGCAATGTCATCATCGCAGCCTCAACCGTACGGCGGTGTTTACAGCTCCGTTTACTCCTCCTCGATCTTCGGTCCAAAGCCTTCTTCCGTCGCACCTTACGGCGTCCAATCAAACTCCGACACGTCGCAGGCCTACCGCAACAAACTCTACCAGTCTCTGCTGGTCCAAAACCGGCAGGAGATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATTCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACAGCAAGTCGTCGGCTCAAGAGGAAGAGGAATTGAGCAATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTGACCGCTGCTACCAACGCCGCCGCTCGGACTCGGACCGCGGCCAGATCTCGAATCGCCAAGGCAATCAGTGCTTCAGTAAGTCGATGCTATTTTACTTTTACATGTCATTCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

239

Amino Acids

26.08

Weight (kDa)

9.15

Isoelectric Point (pI)

63.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	626
AccII	CGCG	2 cut(s)	444, 641
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	2 cut(s)	278, 660
AcyI	GRCGYC	2 cut(s)	12, 153
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	4 cut(s)	83, 271, 274, 627
AflIII	ACRYGT	2 cut(s)	171, 704
AgsI	TTSAA	1 cut(s)	399
AhdI	GACNNNNNGTC	1 cut(s)	463
AjiI	CACGTC	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	6 cut(s)	35, 96, 337, 392, 402, 592
AluI	AGCT	6 cut(s)	35, 96, 337, 392, 402, 592
Alw26I	GTCTC	2 cut(s)	210, 359
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	2 cut(s)	208, 252
AoxI	GGCC	4 cut(s)	180, 445, 519, 642
ApeKI	GCWGC	3 cut(s)	67, 550, 608
ApoI	RAATTY	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	4 cut(s)	122, 214, 573, 636
AsuHPI	GGTGA	2 cut(s)	580, 613
AvaII	GGWCC	4 cut(s)	122, 214, 573, 636
BauI	CACGAG	1 cut(s)	269
BbvCI	CCTCAGC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	79, 537, 595
BccI	CCATC	2 cut(s)	226, 380
BceAI	ACGGC	5 cut(s)	97, 166, 285, 403, 595
BcoDI	GTCTC	2 cut(s)	210, 359
BfoI	RGCGCY	1 cut(s)	265
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	8 cut(s)	68, 276, 445, 551, 609, 621, 624, 642
BlsI	GCNGC	8 cut(s)	69, 277, 446, 552, 610, 622, 625, 643
Bme18I	GGWCC	4 cut(s)	122, 214, 573, 636
BmeRI	GACNNNNNGTC	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	4 cut(s)	122, 214, 573, 636
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	2 cut(s)	48, 677
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	586
BsaHI	GRCGYC	2 cut(s)	12, 153
BsaJI	CCNNGG	2 cut(s)	639, 660
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 271, 274, 627
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	639, 660
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	83, 271, 274, 627
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	45, 364
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	3 cut(s)	97, 100, 347
BseXI	GCAGC	3 cut(s)	79, 537, 595
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	2 cut(s)	444, 641
BshFI	GGCC	4 cut(s)	182, 447, 521, 644
BsiSI	CCGG	2 cut(s)	223, 599
BsiWI	CGTACG	1 cut(s)	78
BslI	CCNNNNNNNGG	4 cut(s)	83, 271, 274, 627
BsmAI	GTCTC	2 cut(s)	210, 359
BsnI	GGCC	4 cut(s)	182, 447, 521, 644
Bsp143I	GATC	4 cut(s)	114, 384, 426, 647
BspANI	GGCC	4 cut(s)	182, 447, 521, 644
BspCNI	CTCAG	2 cut(s)	44, 363
BspFNI	CGCG	2 cut(s)	444, 641
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	639, 660
BssMI	GATC	4 cut(s)	114, 384, 426, 647
BssNI	GRCGYC	2 cut(s)	12, 153
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	477, 510, 551
BstACI	GRCGYC	2 cut(s)	12, 153
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	37, 180
BstDEI	CTNAG	2 cut(s)	31, 350
BstDSI	CCRYGG	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	601
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	444, 641
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	4 cut(s)	117, 387, 429, 650
BstMAI	GTCTC	2 cut(s)	210, 359
BstMBI	GATC	4 cut(s)	114, 384, 426, 647
BstMWI	GCNNNNNNNGC	7 cut(s)	261, 284, 318, 343, 415, 617, 671
BstNSI	RCATGY	1 cut(s)	708
BstPI	GGTNACC	1 cut(s)	601
BstUI	CGCG	2 cut(s)	444, 641
BstV1I	GCAGC	3 cut(s)	79, 537, 595
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	4 cut(s)	182, 447, 521, 644
BtgI	CCRYGG	1 cut(s)	639
BtgZI	GCGATG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	37, 180
CaiI	CAGNNNCTG	2 cut(s)	208, 252
CfoI	GCGC	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	4 cut(s)	122, 214, 573, 636
Cfr42I	CCGCGG	1 cut(s)	642
CpoI	CGGWCCG	1 cut(s)	636
CseI	GACGC	2 cut(s)	142, 299
Csp6I	GTAC	1 cut(s)	79
CspI	CGGWCCG	1 cut(s)	636
CviAII	CATG	1 cut(s)	705
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	31, 350
DpnI	GATC	4 cut(s)	116, 386, 428, 649
DpnII	GATC	4 cut(s)	114, 384, 426, 647
DriI	GACNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	3 cut(s)	477, 510, 551
Eam1105I	GACNNNNNGTC	1 cut(s)	463
EarI	CTCTTC	3 cut(s)	477, 510, 551
EciI	GGCGGA	2 cut(s)	287, 293
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	182
Eco47I	GGWCC	4 cut(s)	122, 214, 573, 636
Eco57I	CTGAAG	2 cut(s)	278, 660
Eco91I	GGTNACC	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	1 cut(s)	708
FaiI	YATR	2 cut(s)	563, 706
FatI	CATG	1 cut(s)	704
Fnu4HI	GCNGC	8 cut(s)	68, 276, 445, 551, 609, 621, 624, 642
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	8 cut(s)	68, 276, 445, 551, 609, 621, 624, 642
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	8 cut(s)	68, 276, 445, 551, 609, 621, 624, 642
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	182, 447, 521, 644
HapII	CCGG	2 cut(s)	223, 599
HgaI	GACGC	2 cut(s)	142, 299
HhaI	GCGC	1 cut(s)	264
Hin1I	GRCGYC	2 cut(s)	12, 153
Hin1II	CATG	1 cut(s)	708
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	3 cut(s)	238, 328, 433
HindII	GTYRAC	3 cut(s)	238, 328, 433
HindIII	AAGCTT	2 cut(s)	390, 590
HinfI	GANTC	3 cut(s)	502, 631, 654
HpaII	CCGG	2 cut(s)	223, 599
HphI	GGTGA	2 cut(s)	580, 613
Hpy166II	GTNNAC	5 cut(s)	91, 103, 238, 328, 433
Hpy188I	TCNGA	6 cut(s)	44, 169, 501, 507, 630, 636
Hpy188III	TCNNGA	3 cut(s)	376, 476, 651
Hpy8I	GTNNAC	5 cut(s)	91, 103, 238, 328, 433
Hpy99I	CGWCG	8 cut(s)	14, 17, 143, 178, 293, 335, 472, 511
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	5 cut(s)	12, 173, 324, 330, 585
HpyCH4V	TGCA	2 cut(s)	4, 409
HpyF10VI	GCNNNNNNNGC	7 cut(s)	261, 284, 318, 343, 415, 617, 671
HpyF3I	CTNAG	2 cut(s)	31, 350
HpySE526I	ACGT	5 cut(s)	12, 173, 324, 330, 585
Hsp92I	GRCGYC	2 cut(s)	12, 153
Hsp92II	CATG	1 cut(s)	708
HspAI	GCGC	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	114, 384, 426, 647
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	3 cut(s)	79, 537, 595
LweI	GCATC	2 cut(s)	48, 677
MaeII	ACGT	5 cut(s)	12, 173, 324, 330, 585
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	4 cut(s)	116, 386, 428, 649
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	4 cut(s)	114, 384, 426, 647
MboII	GAAGA	6 cut(s)	109, 126, 387, 494, 527, 568
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	647
MluCI	AATT	3 cut(s)	438, 453, 488
MlyI	GAGTC	2 cut(s)	511, 625
MmeI	TCCRAC	3 cut(s)	192, 530, 600
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	2 cut(s)	608, 641
MspI	CCGG	2 cut(s)	223, 599
MunI	CAATTG	1 cut(s)	453
MvnI	CGCG	2 cut(s)	444, 641
MwoI	GCNNNNNNNGC	7 cut(s)	261, 284, 318, 343, 415, 617, 671
NdeII	GATC	4 cut(s)	114, 384, 426, 647
NlaIII	CATG	1 cut(s)	708
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	1 cut(s)	708
PceI	AGGCCT	1 cut(s)	182
PciI	ACATGT	1 cut(s)	704
PciSI	GCTCTTC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	654
Pfl23II	CGTACG	1 cut(s)	78
PkrI	GCNGC	8 cut(s)	69, 277, 446, 552, 610, 622, 625, 643
PleI	GAGTC	2 cut(s)	510, 625
PpsI	GAGTC	2 cut(s)	510, 625
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	1 cut(s)	704
PspEI	GGTNACC	1 cut(s)	601
PspLI	CGTACG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	4 cut(s)	122, 214, 573, 636
PstNI	CAGNNNCTG	2 cut(s)	208, 252
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	566
Rsr2I	CGGWCCG	1 cut(s)	636
RsrII	CGGWCCG	1 cut(s)	636
SacII	CCGCGG	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	551
SatI	GCNGC	8 cut(s)	68, 276, 445, 551, 609, 621, 624, 642
Sau3AI	GATC	4 cut(s)	114, 384, 426, 647
Sau96I	GGNCC	4 cut(s)	122, 214, 573, 636
SchI	GAGTC	2 cut(s)	511, 625
SfaNI	GCATC	2 cut(s)	48, 677
Sfr303I	CCGCGG	1 cut(s)	642
SgrBI	CCGCGG	1 cut(s)	642
SinI	GGWCC	4 cut(s)	122, 214, 573, 636
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	3 cut(s)	438, 453, 488
SseBI	AGGCCT	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	5 cut(s)	15, 176, 327, 333, 588
TaqI	TCGA	5 cut(s)	113, 333, 387, 652, 685
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	438, 453, 488
TauI	GCSGC	5 cut(s)	278, 447, 623, 626, 644
TfiI	GAWTC	1 cut(s)	654
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	3 cut(s)	67, 550, 608
Tsp45I	GTSAC	1 cut(s)	601
TspGWI	ACGGA	3 cut(s)	88, 127, 450
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	4 cut(s)	122, 214, 573, 636
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	708
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.