Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

2028373 .. 2029635

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCAAAACGACACTTCCTCCACCGCCTATGGCGGCCACGCCACATCTGCAATGCCGAAATCGCCACTCAAATCGCAATCTAGCGCAGACGATGCCGTGTTCGCTTCCCTCTACTCCGCTATATTCGATAGCAAGCCTTCGGTAAGTCGATACGACGTCGAAGAATCGGACCACGACTCGTCTTCAGCTCACCGCCACCGCCAACTCTACCATTCGATCCTCGTTCAAGATCATCAGGAGATGGTGAACCGCCACAGCCGCTGCCTCAAGCACCTCCAAGAAACCTCCGAGGAAGCCGACGCGCTCCGTCGCGAGAACGTTCATCTCCGCTCTCTCAATCTCGAGCTCAACAAGCACCTCAGTCTACTCATCCACGCCTCAGTACAGAAAAAGTTCGGTTCCCCTTCCTCTGTGCGGACAACGACGCCGTTTGGGATCGTTAGCGGACTTGGCTACATGAGAACTGATGACAAACGAGCAGAGCAGGACGTGTCCGACGAGAGCCCTACGAGTGTGATTGAGAGCGAAGGCGGCGACGCCGAGAATATTGATGCGGAGAGGTTTTCGCTGCCTAAGAGCATTTCTGTGAGGTCTAACGGATACGTGAAGGCTGCTCAGGCCGCTCAAGCCGGTGCTAGCACTGCCACCCGGACTGGGACCGCCACTACATTCAATGCTTCGCAAAAAGTGTTCGTTCCGATAGGGGTGAAAGAGGAGGAGCCACCGGTGGAATTGGAAGTTTACAACCAAGGCATGTTCAAGACAGAGCTGTGCAACAAGTGGCAGGAGGTTGGAGAGTGTCCTTACGGCGATCACTGCCAGTTTGCACATGGAATTGAGGAGCTCCGCCCTGTGATCCGCCACCCGCGCTACAAGACCGACGTCTGCAGGATGGTGCTTTCCGGTGTTGTCTGCCCATACGGTCACCGCTGCCATTTCCGCCACGCCCTCACCGAGAATGAGAAGCTGATGGTTCCAAACAAGCCCAGTCAAAGGCAGTTCAATCTGGACAGGCAAAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

342

Amino Acids

38.07

Weight (kDa)

6.5

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	159, 885
AccBSI	CCGCTC	2 cut(s)	330, 623
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	3 cut(s)	302, 312, 868
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	3 cut(s)	211, 443, 850
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	4 cut(s)	156, 425, 537, 882
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	414, 654, 993
AflIII	ACRYGT	1 cut(s)	489
AgeI	ACCGGT	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	227, 673, 760, 1003
AjiI	CACGTC	1 cut(s)	490
AluBI	AGCT	5 cut(s)	188, 346, 769, 844, 967
AluI	AGCT	5 cut(s)	188, 346, 769, 844, 967
Alw21I	GWGCWC	2 cut(s)	348, 846
AlwI	GGATC	3 cut(s)	211, 443, 850
AlwNI	CAGNNNCTG	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	34, 618
ApeKI	GCWGC	4 cut(s)	261, 568, 611, 930
AsiGI	ACCGGT	1 cut(s)	724
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	3 cut(s)	86, 304, 870
AspS9I	GGNCC	2 cut(s)	169, 657
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	5 cut(s)	182, 256, 718, 917, 943
AsuNHI	GCTAGC	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	169, 657
BanII	GRGCYC	3 cut(s)	348, 506, 846
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	348, 846
BbvI	GCAGC	4 cut(s)	248, 555, 598, 917
BccI	CCATC	3 cut(s)	235, 886, 964
BceAI	ACGGC	3 cut(s)	80, 412, 823
BciVI	GTATCC	1 cut(s)	593
BcnI	CCSGG	1 cut(s)	649
BfaI	CTAG	2 cut(s)	81, 636
BfmI	CTRYAG	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	593
BisI	GCNGC	8 cut(s)	34, 259, 262, 532, 569, 612, 621, 931
BlsI	GCNGC	8 cut(s)	35, 260, 263, 533, 570, 613, 622, 932
Bme1390I	CCNGG	1 cut(s)	649
Bme18I	GGWCC	2 cut(s)	169, 657
BmeT110I	CYCGRG	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	169, 657
BmiI	GGNNCC	4 cut(s)	400, 658, 720, 975
BmrFI	CCNGG	1 cut(s)	649
BmrI	ACTGGG	2 cut(s)	663, 981
BmsI	GCATC	2 cut(s)	82, 541
BmtI	GCTAGC	1 cut(s)	639
BmuI	ACTGGG	2 cut(s)	663, 981
BoxI	GACNNNNGTC	1 cut(s)	881
BpiI	GAAGAC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	251, 609
BpuMI	CCSGG	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	604
BsaHI	GRCGYC	4 cut(s)	156, 425, 537, 882
BsaJI	CCNNGG	2 cut(s)	288, 748
BsaWI	WCCGGW	2 cut(s)	724, 902
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 654, 993
Bse118I	RCCGGY	2 cut(s)	629, 724
Bse1I	ACTGG	3 cut(s)	658, 820, 987
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	288, 748
BseGI	GGATG	2 cut(s)	369, 897
BseLI	CCNNNNNNNGG	3 cut(s)	414, 654, 993
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	373, 393, 629
BseNI	ACTGG	3 cut(s)	658, 820, 987
BseRI	GAGGAG	3 cut(s)	728, 731, 854
BseXI	GCAGC	4 cut(s)	248, 555, 598, 917
Bsh1236I	CGCG	3 cut(s)	302, 312, 868
BshFI	GGCC	2 cut(s)	36, 620
BshTI	ACCGGT	1 cut(s)	724
BsiHKAI	GWGCWC	2 cut(s)	348, 846
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	630, 649, 725, 903
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	3 cut(s)	414, 654, 993
BsmFI	GGGAC	1 cut(s)	670
BsnI	GGCC	2 cut(s)	36, 620
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	3 cut(s)	348, 506, 846
Bsp143I	GATC	5 cut(s)	216, 229, 435, 811, 855
Bsp68I	TCGCGA	1 cut(s)	312
BspANI	GGCC	2 cut(s)	36, 620
BspCNI	CTCAG	3 cut(s)	372, 392, 628
BspFNI	CGCG	3 cut(s)	302, 312, 868
BspLI	GGNNCC	4 cut(s)	400, 658, 720, 975
BspMAI	CTGCAG	1 cut(s)	890
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	3 cut(s)	211, 443, 850
BsrBI	CCGCTC	2 cut(s)	330, 623
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	2 cut(s)	629, 724
BsrI	ACTGG	3 cut(s)	658, 820, 987
BssAI	RCCGGY	2 cut(s)	629, 724
BssECI	CCNNGG	2 cut(s)	288, 748
BssMI	GATC	5 cut(s)	216, 229, 435, 811, 855
BssNI	GRCGYC	4 cut(s)	156, 425, 537, 882
BssT1I	CCWWGG	1 cut(s)	748
Bst4CI	ACNGT	1 cut(s)	923
BstACI	GRCGYC	4 cut(s)	156, 425, 537, 882
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	134, 637
BstDEI	CTNAG	4 cut(s)	359, 379, 573, 615
BstEII	GGTNACC	1 cut(s)	923
BstF5I	GGATG	2 cut(s)	369, 897
BstFNI	CGCG	3 cut(s)	302, 312, 868
BstHHI	GCGC	3 cut(s)	86, 304, 870
BstKTI	GATC	5 cut(s)	219, 232, 438, 814, 858
BstMBI	GATC	5 cut(s)	216, 229, 435, 811, 855
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	881
BstPI	GGTNACC	1 cut(s)	923
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	1 cut(s)	886
BstUI	CGCG	3 cut(s)	302, 312, 868
BstV1I	GCAGC	4 cut(s)	248, 555, 598, 917
BstV2I	GAAGAC	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	36, 620
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	369, 897
BtsI	GCAGTG	2 cut(s)	639, 814
BtsIMutI	CAGTG	2 cut(s)	639, 814
BtuMI	TCGCGA	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	134, 637
CaiI	CAGNNNCTG	1 cut(s)	261
CfoI	GCGC	3 cut(s)	86, 304, 870
Cfr10I	RCCGGY	2 cut(s)	629, 724
Cfr13I	GGNCC	2 cut(s)	169, 657
CseI	GACGC	3 cut(s)	308, 433, 545
Csp6I	GTAC	1 cut(s)	383
CspAI	ACCGGT	1 cut(s)	724
CviAII	CATG	3 cut(s)	457, 754, 830
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	4 cut(s)	359, 379, 573, 615
DpnI	GATC	5 cut(s)	218, 231, 437, 813, 857
DpnII	GATC	5 cut(s)	216, 229, 435, 811, 855
EaeI	YGGCCR	1 cut(s)	34
EciI	GGCGGA	3 cut(s)	836, 848, 929
Ecl136II	GAGCTC	2 cut(s)	346, 844
Eco130I	CCWWGG	1 cut(s)	748
Eco24I	GRGCYC	3 cut(s)	348, 506, 846
Eco47I	GGWCC	2 cut(s)	169, 657
Eco53kI	GAGCTC	2 cut(s)	346, 844
Eco57I	CTGAAG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	923
EcoICRI	GAGCTC	2 cut(s)	346, 844
EcoO65I	GGTNACC	1 cut(s)	923
EcoT14I	CCWWGG	1 cut(s)	748
EcoT38I	GRGCYC	3 cut(s)	348, 506, 846
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	3 cut(s)	460, 757, 833
FaiI	YATR	6 cut(s)	30, 122, 458, 755, 831, 919
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	3 cut(s)	456, 753, 829
FauI	CCCGC	1 cut(s)	873
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	8 cut(s)	34, 259, 262, 532, 569, 612, 621, 931
FokI	GGATG	2 cut(s)	356, 904
FriOI	GRGCYC	3 cut(s)	348, 506, 846
Fsp4HI	GCNGC	8 cut(s)	34, 259, 262, 532, 569, 612, 621, 931
FspBI	CTAG	2 cut(s)	81, 636
GlaI	GCGC	3 cut(s)	85, 303, 869
GluI	GCNGC	8 cut(s)	34, 259, 262, 532, 569, 612, 621, 931
HaeIII	GGCC	2 cut(s)	36, 620
HapII	CCGG	4 cut(s)	630, 649, 725, 903
HgaI	GACGC	3 cut(s)	308, 433, 545
HhaI	GCGC	3 cut(s)	86, 304, 870
Hin1I	GRCGYC	4 cut(s)	156, 425, 537, 882
Hin1II	CATG	3 cut(s)	460, 757, 833
Hin6I	GCGC	3 cut(s)	84, 302, 868
HinP1I	GCGC	3 cut(s)	84, 302, 868
HinfI	GANTC	2 cut(s)	164, 176
HpaII	CCGG	4 cut(s)	630, 649, 725, 903
HphI	GGTGA	5 cut(s)	182, 256, 718, 917, 943
Hpy166II	GTNNAC	3 cut(s)	247, 365, 742
Hpy188I	TCNGA	4 cut(s)	169, 289, 496, 699
Hpy188III	TCNNGA	6 cut(s)	227, 236, 311, 341, 760, 1007
Hpy8I	GTNNAC	3 cut(s)	247, 365, 742
Hpy99I	CGWCG	8 cut(s)	158, 161, 302, 312, 427, 500, 539, 884
HpyAV	CCTTC	4 cut(s)	147, 414, 521, 601
HpyCH4III	ACNGT	1 cut(s)	923
HpyCH4IV	ACGT	5 cut(s)	156, 318, 489, 603, 882
HpyCH4V	TGCA	5 cut(s)	4, 50, 774, 827, 888
HpyF3I	CTNAG	4 cut(s)	359, 379, 573, 615
HpySE526I	ACGT	5 cut(s)	156, 318, 489, 603, 882
Hsp92I	GRCGYC	4 cut(s)	156, 425, 537, 882
Hsp92II	CATG	3 cut(s)	460, 757, 833
HspAI	GCGC	3 cut(s)	84, 302, 868
Kzo9I	GATC	5 cut(s)	216, 229, 435, 811, 855
LmnI	GCTCC	4 cut(s)	309, 718, 841, 849
Lsp1109I	GCAGC	4 cut(s)	248, 555, 598, 917
LweI	GCATC	2 cut(s)	82, 541
MaeI	CTAG	2 cut(s)	81, 636
MaeII	ACGT	5 cut(s)	156, 318, 489, 603, 882
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	5 cut(s)	218, 231, 437, 813, 857
MbiI	CCGCTC	2 cut(s)	330, 623
MboI	GATC	5 cut(s)	216, 229, 435, 811, 855
MboII	GAAGA	2 cut(s)	173, 174
MhlI	GDGCHC	3 cut(s)	348, 506, 846
MluCI	AATT	2 cut(s)	731, 834
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	519, 772
MroXI	GAANNNNTTC	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	261, 930
MspI	CCGG	4 cut(s)	630, 649, 725, 903
MspR9I	CCNGG	1 cut(s)	649
MvnI	CGCG	3 cut(s)	302, 312, 868
NciI	CCSGG	1 cut(s)	649
NdeII	GATC	5 cut(s)	216, 229, 435, 811, 855
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	3 cut(s)	460, 757, 833
NlaIV	GGNNCC	4 cut(s)	400, 658, 720, 975
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	923
NruI	TCGCGA	1 cut(s)	312
NspI	RCATGY	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 951
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	724
PkrI	GCNGC	8 cut(s)	35, 260, 263, 533, 570, 613, 622, 932
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	881
Psp124BI	GAGCTC	2 cut(s)	348, 846
Psp1406I	AACGTT	1 cut(s)	318
PspEI	GGTNACC	1 cut(s)	923
PspN4I	GGNNCC	4 cut(s)	400, 658, 720, 975
PspPI	GGNCC	2 cut(s)	169, 657
PstI	CTGCAG	1 cut(s)	890
PstNI	CAGNNNCTG	1 cut(s)	261
RruI	TCGCGA	1 cut(s)	312
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	2 cut(s)	348, 846
SatI	GCNGC	8 cut(s)	34, 259, 262, 532, 569, 612, 621, 931
Sau3AI	GATC	5 cut(s)	216, 229, 435, 811, 855
Sau96I	GGNCC	2 cut(s)	169, 657
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	649
SduI	GDGCHC	3 cut(s)	348, 506, 846
SfaNI	GCATC	2 cut(s)	82, 541
SfcI	CTRYAG	1 cut(s)	886
Sfr274I	CTCGAG	1 cut(s)	341
SgrAI	CRCCGGYG	1 cut(s)	724
SinI	GGWCC	2 cut(s)	169, 657
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	266, 341, 624
SmoI	CTYRAG	3 cut(s)	266, 341, 624
Sse9I	AATT	2 cut(s)	731, 834
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	2 cut(s)	81, 636
SstI	GAGCTC	2 cut(s)	348, 846
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	1 cut(s)	923
TaiI	ACGT	5 cut(s)	159, 321, 492, 606, 885
TaqI	TCGA	5 cut(s)	126, 148, 159, 215, 342
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	2 cut(s)	731, 834
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	4 cut(s)	36, 261, 534, 623
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	646, 821
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	4 cut(s)	261, 568, 611, 930
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	2 cut(s)	296, 612
TspRI	CASTG	2 cut(s)	646, 821
VpaK11BI	GGWCC	2 cut(s)	169, 657
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XhoI	CTCGAG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	2 cut(s)	81, 636
ZraI	GACGTC	2 cut(s)	157, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.