Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00262

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

295 .. 2477

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTCACGTTACGACTTCAGTGCTTCTGGAGTGGAACTGAAACCGAGAATGCAAAACGACGTCGCCTACTCCACCGCCTCATCTTTCATCGGAACCTCCGCAATGTCATCATCGCAGCCTCAACCGTACGGCGGTGTTTACAGCTCCGTTTACTCCTCCTCGATCTTCGGTCCAAAGCCTTCTTCCGTCGCACCTTACGGCGTCCAATCAAACTCCGACACGTCGCAGGCCTACCGCAACAAACTCTACCAGTCTCTGCTGGTCCAAAACCGGCAGGAGATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACGGCAAGTCGTCGGCTCAAGAGGAAGAGGAATTGAGCGGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTGACCGCTGCTACCAACGCCGCCGCTCGGATTCAGACAGCGGCCAGATCTCGAATCGCCAAGGCAATCAGTGCTTCACAAAAGGTGTACGTTCAAGGAGGGAAGAAAGAGGAAGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAATGGCAGGGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGTGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCCAGAATGGTGCTAGCCGGAAGGAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCCATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

322

Amino Acids

35.29

Weight (kDa)

8.85

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AccBSI	CCGCTC	2 cut(s)	513, 647
AccII	CGCG	2 cut(s)	462, 883
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	60, 201
AdeI	CACNNNGTG	1 cut(s)	850
AfaI	GTAC	2 cut(s)	128, 710
AfiI	CCNNNNNNNGG	4 cut(s)	131, 319, 322, 648
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	5 cut(s)	417, 716, 746, 760, 775
AhdI	GACNNNNNGTC	1 cut(s)	481
AjiI	CACGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	762
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	7 cut(s)	144, 385, 410, 420, 613, 859, 928
AluI	AGCT	7 cut(s)	144, 385, 410, 420, 613, 859, 928
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	2 cut(s)	256, 300
AoxI	GGCC	5 cut(s)	228, 463, 540, 663, 956
ApeKI	GCWGC	4 cut(s)	115, 571, 629, 859
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	3 cut(s)	312, 864, 885
AspS9I	GGNCC	4 cut(s)	170, 262, 594, 957
AsuC2I	CCSGG	1 cut(s)	866
AsuHPI	GGTGA	4 cut(s)	601, 634, 821, 880
AsuNHI	GCTAGC	1 cut(s)	914
AvaII	GGWCC	3 cut(s)	170, 262, 594
BauI	CACGAG	1 cut(s)	317
BbvI	GCAGC	4 cut(s)	127, 558, 616, 846
BccI	CCATC	2 cut(s)	274, 968
BceAI	ACGGC	6 cut(s)	145, 214, 333, 421, 493, 616
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	866
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	915
BfoI	RGCGCY	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	955
BglII	AGATCT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	764, 866
Bme18I	GGWCC	3 cut(s)	170, 262, 594
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	4 cut(s)	170, 262, 594, 957
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	764, 866
BmtI	GCTAGC	1 cut(s)	918
BoxI	GACNNNNGTC	1 cut(s)	896
BpmI	CTGGAG	2 cut(s)	48, 770
BpuEI	CTTGAG	2 cut(s)	383, 477
BpuMI	CCSGG	1 cut(s)	866
BsaAI	YACGTR	1 cut(s)	607
BsaHI	GRCGYC	2 cut(s)	60, 201
BsaJI	CCNNGG	3 cut(s)	681, 763, 894
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 319, 322, 648
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	250, 753
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	3 cut(s)	681, 763, 894
BseLI	CCNNNNNNNGG	4 cut(s)	131, 319, 322, 648
BseMI	GCAATG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	250, 753
BseRI	GAGGAG	3 cut(s)	145, 148, 869
BseXI	GCAGC	4 cut(s)	127, 558, 616, 846
BseYI	CCCAGC	1 cut(s)	950
BsgI	GTGCAG	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	462, 883
BshFI	GGCC	5 cut(s)	230, 465, 542, 665, 958
BsiSI	CCGG	4 cut(s)	271, 620, 866, 919
BsiWI	CGTACG	1 cut(s)	126
BslI	CCNNNNNNNGG	4 cut(s)	131, 319, 322, 648
BsmAI	GTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	5 cut(s)	230, 465, 542, 665, 958
Bsp143I	GATC	5 cut(s)	162, 402, 444, 517, 668
BspANI	GGCC	5 cut(s)	230, 465, 542, 665, 958
BspFNI	CGCG	2 cut(s)	462, 883
BspLI	GGNNCC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	918
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	572
BsrBI	CCGCTC	2 cut(s)	513, 647
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	250, 753
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	681, 763, 894
BssMI	GATC	5 cut(s)	162, 402, 444, 517, 668
BssNI	GRCGYC	2 cut(s)	60, 201
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	126, 848
Bst6I	CTCTTC	3 cut(s)	495, 531, 572
BstACI	GRCGYC	2 cut(s)	60, 201
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	4 cut(s)	228, 916, 930, 956
BstEII	GGTNACC	1 cut(s)	622
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstFNI	CGCG	2 cut(s)	462, 883
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	3 cut(s)	312, 864, 885
BstKTI	GATC	5 cut(s)	165, 405, 447, 520, 671
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	5 cut(s)	162, 402, 444, 517, 668
BstNI	CCWGG	1 cut(s)	764
BstPAI	GACNNNNGTC	1 cut(s)	896
BstPI	GGTNACC	1 cut(s)	622
BstSCI	CCNGG	2 cut(s)	762, 864
BstUI	CGCG	2 cut(s)	462, 883
BstV1I	GCAGC	4 cut(s)	127, 558, 616, 846
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
BsuRI	GGCC	5 cut(s)	230, 465, 542, 665, 958
BtgZI	GCGATG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	3 cut(s)	25, 697, 829
Cac8I	GCNNGC	4 cut(s)	228, 916, 930, 956
CaiI	CAGNNNCTG	2 cut(s)	256, 300
CfoI	GCGC	3 cut(s)	312, 864, 885
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	4 cut(s)	170, 262, 594, 957
CseI	GACGC	2 cut(s)	190, 347
Csp6I	GTAC	2 cut(s)	127, 709
CviQI	GTAC	2 cut(s)	127, 709
DpnI	GATC	5 cut(s)	164, 404, 446, 519, 670
DpnII	GATC	5 cut(s)	162, 402, 444, 517, 668
DraIII	CACNNNGTG	1 cut(s)	850
DriI	GACNNNNNGTC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	3 cut(s)	495, 531, 572
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EarI	CTCTTC	3 cut(s)	495, 531, 572
EciI	GGCGGA	2 cut(s)	335, 341
Eco130I	CCWWGG	1 cut(s)	681
Eco147I	AGGCCT	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	170, 262, 594
Eco57I	CTGAAG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	622
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaiI	YATR	1 cut(s)	584
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FauI	CCCGC	1 cut(s)	888
FspBI	CTAG	1 cut(s)	915
GlaI	GCGC	3 cut(s)	311, 863, 884
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	2 cut(s)	48, 770
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	5 cut(s)	230, 465, 542, 665, 958
HapII	CCGG	4 cut(s)	271, 620, 866, 919
HgaI	GACGC	2 cut(s)	190, 347
HhaI	GCGC	3 cut(s)	312, 864, 885
Hin1I	GRCGYC	2 cut(s)	60, 201
Hin6I	GCGC	3 cut(s)	310, 862, 883
HinP1I	GCGC	3 cut(s)	310, 862, 883
HincII	GTYRAC	3 cut(s)	286, 376, 451
HindII	GTYRAC	3 cut(s)	286, 376, 451
HindIII	AAGCTT	2 cut(s)	408, 611
HinfI	GANTC	5 cut(s)	523, 652, 675, 803, 871
HpaII	CCGG	4 cut(s)	271, 620, 866, 919
HphI	GGTGA	4 cut(s)	601, 634, 821, 880
Hpy166II	GTNNAC	6 cut(s)	139, 151, 286, 376, 451, 709
Hpy188I	TCNGA	6 cut(s)	92, 217, 522, 528, 651, 657
Hpy188III	TCNNGA	5 cut(s)	27, 400, 494, 672, 775
Hpy8I	GTNNAC	6 cut(s)	139, 151, 286, 376, 451, 709
Hpy99I	CGWCG	8 cut(s)	62, 65, 191, 226, 341, 383, 490, 532
HpyAV	CCTTC	2 cut(s)	189, 916
HpyCH4III	ACNGT	2 cut(s)	126, 848
HpyCH4IV	ACGT	7 cut(s)	7, 60, 221, 372, 378, 606, 711
HpyCH4V	TGCA	3 cut(s)	52, 427, 789
HpySE526I	ACGT	7 cut(s)	7, 60, 221, 372, 378, 606, 711
Hsp92I	GRCGYC	2 cut(s)	60, 201
HspAI	GCGC	3 cut(s)	310, 862, 883
Kzo9I	GATC	5 cut(s)	162, 402, 444, 517, 668
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	3 cut(s)	149, 856, 925
Lsp1109I	GCAGC	4 cut(s)	127, 558, 616, 846
MaeI	CTAG	1 cut(s)	915
MaeII	ACGT	7 cut(s)	7, 60, 221, 372, 378, 606, 711
MaeIII	GTNAC	4 cut(s)	3, 8, 622, 809
MalI	GATC	5 cut(s)	164, 404, 446, 519, 670
MbiI	CCGCTC	2 cut(s)	513, 647
MboI	GATC	5 cut(s)	162, 402, 444, 517, 668
MboII	GAAGA	7 cut(s)	157, 174, 405, 512, 548, 589, 736
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	668
MluCI	AATT	4 cut(s)	456, 471, 506, 836
MlyI	GAGTC	2 cut(s)	532, 812
MmeI	TCCRAC	3 cut(s)	240, 551, 621
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	2 cut(s)	629, 662
MspI	CCGG	4 cut(s)	271, 620, 866, 919
MspR9I	CCNGG	2 cut(s)	764, 866
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	2 cut(s)	462, 883
NciI	CCSGG	1 cut(s)	866
NdeII	GATC	5 cut(s)	162, 402, 444, 517, 668
NheI	GCTAGC	1 cut(s)	914
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	3 cut(s)	3, 622, 809
PceI	AGGCCT	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	652, 675, 871
Pfl23II	CGTACG	1 cut(s)	126
PleI	GAGTC	2 cut(s)	531, 811
PpsI	GAGTC	2 cut(s)	531, 811
Ppu21I	YACGTR	1 cut(s)	607
PshAI	GACNNNNGTC	1 cut(s)	896
Psp6I	CCWGG	1 cut(s)	762
PspEI	GGTNACC	1 cut(s)	622
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	1 cut(s)	762
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	4 cut(s)	170, 262, 594, 957
PstNI	CAGNNNCTG	2 cut(s)	256, 300
PsuI	RGATCY	1 cut(s)	668
RsaI	GTAC	2 cut(s)	128, 710
RsaNI	GTAC	2 cut(s)	127, 709
RseI	CAYNNNNRTG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	572
Sau3AI	GATC	5 cut(s)	162, 402, 444, 517, 668
Sau96I	GGNCC	4 cut(s)	170, 262, 594, 957
SchI	GAGTC	2 cut(s)	532, 812
ScrFI	CCNGG	2 cut(s)	764, 866
SinI	GGWCC	3 cut(s)	170, 262, 594
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	2 cut(s)	398, 492
SmoI	CTYRAG	2 cut(s)	398, 492
Sse9I	AATT	4 cut(s)	456, 471, 506, 836
SseBI	AGGCCT	1 cut(s)	230
SspMI	CTAG	1 cut(s)	915
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	762, 864
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	126, 848
TaiI	ACGT	7 cut(s)	10, 63, 224, 375, 381, 609, 714
TaqI	TCGA	4 cut(s)	161, 381, 405, 673
TaqII	GACCGA	2 cut(s)	158, 908
TasI	AATT	4 cut(s)	456, 471, 506, 836
TauI	GCSGC	6 cut(s)	326, 465, 516, 644, 647, 665
TfiI	GAWTC	3 cut(s)	652, 675, 871
TscAI	CASTG	3 cut(s)	25, 697, 836
TseFI	GTSAC	3 cut(s)	3, 622, 809
TseI	GCWGC	4 cut(s)	115, 571, 629, 859
Tsp45I	GTSAC	3 cut(s)	3, 622, 809
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	3 cut(s)	136, 175, 468
TspRI	CASTG	3 cut(s)	25, 697, 836
VpaK11BI	GGWCC	3 cut(s)	170, 262, 594
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	456
XspI	CTAG	1 cut(s)	915
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.