MD13G1034100.v1.1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
2412715 .. 2414932
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1034100.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGCAAAACGACACTTCCTGTACCGCTTATGGCGGCCACGCCACATCTGCAATGCCGCAATCGCCACTTAAATCGCAATCTAGCGAAGATAATGCCGTGTTCGCTTCCCTCTACTCCGCTATATTCGATCGCAAGCCTTCGGTAAGTCGATACGACGTCGAAGAATCGGACCACGACTCGTCTTCAGCTCACCGCCACCGCCAACTCTACCATTCGATCCTCGTTCAAGATCATCAGGAGATGGTGAACCGCCACAGCCGCTGCCTCAAGCGCCTCCAAGAAACCTCCGAGGAAGCCGACGCTCTCCGTCGCGAGAACGTTCATCTCCGCTCTCTCAATCTCGAGCTCAACAAGCAACTCAGTCTACTCATCCACGCCTCCGTGCAGAAACAGTTCGGTTCCCCTTCCTCTGTGCAGACAACGACGCCGTTTGGGATCGTTAGCGGACTTCGCGACATGAGAATTGATGACAAGCGAGCAGAGCGGGACGTGTCCAACAAGAGCCCTACGAGTGTGATTGAGAGCGAAGGCGGCGACGCCGAGAATATTGATGTGGAGAGGTTTTCGCTGCCTAAGAGCATTTCTGTGAGGTCTAACGGATACGTGAAGGCTGCTCAGGCCGCTCAAGCCGGTGCTAGCACTGCCACTCGGACTGTGACCGCCACTGCATTCAATGCTTCGCAAAAAGTGTTCGTTCCGAAAGGGGTGAAAGAGGAGGAGCCACCGCTGGAATTGGAAGTTTACAACCAAGGCATGTTCAAGACAGAGCTGTGCAACAAGTGGCAGGAGGTCGGAGAGTGTCCTTACGGCGATCACTGCCAGTTTGCACATGGGATTGAGGAGCTCCGCCCTGTGATCCGCCACCCGCGCTACAAGACCGAGGTCTGCAGGATGGTGCTTTCCGGTGCTGTCTGCCCGTACGGTCACCGCTGCCATTTCCGCCACGCCCTCACCGAGAATGAGAAGCTGATGGTTCCAAACAAGCCCAGGCAAAGGCAGTTCAATCGGGACAGGTAA

Protein Analysis

339

Amino Acids

38.08

Weight (kDa)

7.68

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 253 - 278 4.7e-10 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 258 - 277 4.6e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccBSI CCGCTC 3 cut(s) 330, 484, 623
AccI GTMKAC 1 cut(s) 364
AccII CGCG 3 cut(s) 312, 453, 868
AclI AACGTT 1 cut(s) 318
AclWI GGATC 3 cut(s) 211, 443, 850
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 3 cut(s) 156, 425, 537
AfaI GTAC 2 cut(s) 22, 920
AfiI CCNNNNNNNGG 1 cut(s) 993
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 4 cut(s) 227, 673, 760, 1003
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 986
AluBI AGCT 5 cut(s) 188, 346, 769, 844, 967
AluI AGCT 5 cut(s) 188, 346, 769, 844, 967
Alw21I GWGCWC 2 cut(s) 348, 846
AlwI GGATC 3 cut(s) 211, 443, 850
AlwNI CAGNNNCTG 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 34, 618
ApeKI GCWGC 4 cut(s) 261, 568, 611, 930
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 273, 870
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 5 cut(s) 182, 256, 718, 917, 943
AsuNHI GCTAGC 1 cut(s) 635
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 169
BanII GRGCYC 3 cut(s) 348, 506, 846
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 348, 846
BbvI GCAGC 4 cut(s) 248, 555, 598, 917
BccI CCATC 3 cut(s) 235, 886, 964
BceAI ACGGC 3 cut(s) 80, 412, 823
BcgI CGANNNNNNTGC 3 cut(s) 74, 108, 986
BciT130I CCWGG 1 cut(s) 988
BciVI GTATCC 1 cut(s) 593
BfaI CTAG 2 cut(s) 81, 636
BfmI CTRYAG 1 cut(s) 886
BfoI RGCGCY 1 cut(s) 274
BfuI GTATCC 1 cut(s) 593
BisI GCNGC 9 cut(s) 34, 56, 259, 262, 532, 569, 612, 621, 931
BlsI GCNGC 9 cut(s) 35, 57, 260, 263, 533, 570, 613, 622, 932
Bme1390I CCNGG 1 cut(s) 988
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 3 cut(s) 400, 720, 975
BmrFI CCNGG 1 cut(s) 988
BmtI GCTAGC 1 cut(s) 639
BoxI GACNNNNGTC 1 cut(s) 881
BpiI GAAGAC 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 251, 609
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 3 cut(s) 156, 425, 537
BsaJI CCNNGG 4 cut(s) 288, 748, 879, 986
BsaWI WCCGGW 1 cut(s) 902
Bsc4I CCNNNNNNNGG 1 cut(s) 993
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 820
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 988
BseDI CCNNGG 4 cut(s) 288, 748, 879, 986
BseGI GGATG 2 cut(s) 369, 897
BseLI CCNNNNNNNGG 1 cut(s) 993
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 373, 629
BseNI ACTGG 1 cut(s) 820
BseRI GAGGAG 3 cut(s) 728, 731, 854
BseXI GCAGC 4 cut(s) 248, 555, 598, 917
BsgI GTGCAG 2 cut(s) 404, 434
Bsh1236I CGCG 3 cut(s) 312, 453, 868
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 36, 620
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 348, 846
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 630, 903
BsiWI CGTACG 1 cut(s) 918
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 993
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 2 cut(s) 36, 620
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 348, 506, 846
Bsp143I GATC 6 cut(s) 127, 216, 229, 435, 811, 855
Bsp68I TCGCGA 2 cut(s) 312, 453
BspANI GGCC 2 cut(s) 36, 620
BspCNI CTCAG 2 cut(s) 372, 628
BspFNI CGCG 3 cut(s) 312, 453, 868
BspLI GGNNCC 3 cut(s) 400, 720, 975
BspMAI CTGCAG 1 cut(s) 890
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 3 cut(s) 211, 443, 850
BsrBI CCGCTC 3 cut(s) 330, 484, 623
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 820
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 4 cut(s) 288, 748, 879, 986
BssMI GATC 6 cut(s) 127, 216, 229, 435, 811, 855
BssNI GRCGYC 3 cut(s) 156, 425, 537
BssT1I CCWWGG 1 cut(s) 748
Bst2UI CCWGG 1 cut(s) 988
Bst4CI ACNGT 3 cut(s) 393, 655, 923
BstACI GRCGYC 3 cut(s) 156, 425, 537
BstAPI GCANNNNNTGC 1 cut(s) 674
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 134, 477, 637
BstDEI CTNAG 3 cut(s) 359, 573, 615
BstEII GGTNACC 1 cut(s) 923
BstF5I GGATG 2 cut(s) 369, 897
BstFNI CGCG 3 cut(s) 312, 453, 868
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 273, 870
BstKTI GATC 6 cut(s) 130, 219, 232, 438, 814, 858
BstMBI GATC 6 cut(s) 127, 216, 229, 435, 811, 855
BstMCI CGRYCG 1 cut(s) 130
BstNI CCWGG 1 cut(s) 988
BstNSI RCATGY 1 cut(s) 757
BstPAI GACNNNNGTC 1 cut(s) 881
BstPI GGTNACC 1 cut(s) 923
BstSCI CCNGG 1 cut(s) 986
BstSFI CTRYAG 1 cut(s) 886
BstUI CGCG 3 cut(s) 312, 453, 868
BstV1I GCAGC 4 cut(s) 248, 555, 598, 917
BstV2I GAAGAC 1 cut(s) 174
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 2 cut(s) 36, 620
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 2 cut(s) 369, 897
BtsI GCAGTG 3 cut(s) 639, 663, 814
BtsIMutI CAGTG 3 cut(s) 639, 663, 814
BtuMI TCGCGA 2 cut(s) 312, 453
Cac8I GCNNGC 3 cut(s) 134, 477, 637
CaiI CAGNNNCTG 1 cut(s) 261
CfoI GCGC 2 cut(s) 273, 870
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 3 cut(s) 308, 433, 545
Csp6I GTAC 2 cut(s) 21, 919
CviAII CATG 3 cut(s) 457, 754, 830
CviQI GTAC 2 cut(s) 21, 919
DdeI CTNAG 3 cut(s) 359, 573, 615
DpnI GATC 6 cut(s) 129, 218, 231, 437, 813, 857
DpnII GATC 6 cut(s) 127, 216, 229, 435, 811, 855
EaeI YGGCCR 1 cut(s) 34
EciI GGCGGA 3 cut(s) 836, 848, 929
Ecl136II GAGCTC 2 cut(s) 346, 844
Eco130I CCWWGG 1 cut(s) 748
Eco24I GRGCYC 3 cut(s) 348, 506, 846
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 2 cut(s) 346, 844
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 923
EcoICRI GAGCTC 2 cut(s) 346, 844
EcoO65I GGTNACC 1 cut(s) 923
EcoRII CCWGG 1 cut(s) 986
EcoT14I CCWWGG 1 cut(s) 748
EcoT38I GRGCYC 3 cut(s) 348, 506, 846
ErhI CCWWGG 1 cut(s) 748
FaeI CATG 3 cut(s) 460, 757, 833
FaiI YATR 5 cut(s) 30, 122, 458, 755, 831
FaqI GGGAC 1 cut(s) 500
FatI CATG 3 cut(s) 456, 753, 829
FauI CCCGC 2 cut(s) 477, 873
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 9 cut(s) 34, 56, 259, 262, 532, 569, 612, 621, 931
FokI GGATG 2 cut(s) 356, 904
FriOI GRGCYC 3 cut(s) 348, 506, 846
Fsp4HI GCNGC 9 cut(s) 34, 56, 259, 262, 532, 569, 612, 621, 931
FspBI CTAG 2 cut(s) 81, 636
GlaI GCGC 2 cut(s) 272, 869
GluI GCNGC 9 cut(s) 34, 56, 259, 262, 532, 569, 612, 621, 931
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 2 cut(s) 36, 620
HapII CCGG 2 cut(s) 630, 903
HgaI GACGC 3 cut(s) 308, 433, 545
HhaI GCGC 2 cut(s) 273, 870
Hin1I GRCGYC 3 cut(s) 156, 425, 537
Hin1II CATG 3 cut(s) 460, 757, 833
Hin6I GCGC 2 cut(s) 271, 868
HinP1I GCGC 2 cut(s) 271, 868
HinfI GANTC 2 cut(s) 164, 176
HpaII CCGG 2 cut(s) 630, 903
HphI GGTGA 5 cut(s) 182, 256, 718, 917, 943
Hpy166II GTNNAC 3 cut(s) 247, 365, 742
Hpy188I TCNGA 5 cut(s) 169, 289, 651, 699, 794
Hpy188III TCNNGA 7 cut(s) 227, 236, 311, 341, 452, 760, 1007
Hpy8I GTNNAC 3 cut(s) 247, 365, 742
Hpy99I CGWCG 6 cut(s) 158, 161, 302, 312, 427, 539
HpyAV CCTTC 4 cut(s) 147, 414, 521, 601
HpyCH4III ACNGT 3 cut(s) 393, 655, 923
HpyCH4IV ACGT 4 cut(s) 156, 318, 489, 603
HpyCH4V TGCA 8 cut(s) 4, 50, 385, 415, 668, 774, 827, 888
HpyF3I CTNAG 3 cut(s) 359, 573, 615
HpySE526I ACGT 4 cut(s) 156, 318, 489, 603
Hsp92I GRCGYC 3 cut(s) 156, 425, 537
Hsp92II CATG 3 cut(s) 460, 757, 833
HspAI GCGC 2 cut(s) 271, 868
Kzo9I GATC 6 cut(s) 127, 216, 229, 435, 811, 855
LmnI GCTCC 3 cut(s) 718, 841, 849
Lsp1109I GCAGC 4 cut(s) 248, 555, 598, 917
MaeI CTAG 2 cut(s) 81, 636
MaeII ACGT 4 cut(s) 156, 318, 489, 603
MaeIII GTNAC 2 cut(s) 655, 923
MalI GATC 6 cut(s) 129, 218, 231, 437, 813, 857
MbiI CCGCTC 3 cut(s) 330, 484, 623
MboI GATC 6 cut(s) 127, 216, 229, 435, 811, 855
MboII GAAGA 3 cut(s) 98, 173, 174
MhlI GDGCHC 3 cut(s) 348, 506, 846
MluCI AATT 2 cut(s) 462, 731
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 519, 772
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 584
MspA1I CMGCKG 3 cut(s) 261, 727, 930
MspI CCGG 2 cut(s) 630, 903
MspR9I CCNGG 1 cut(s) 988
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 1 cut(s) 988
MvnI CGCG 3 cut(s) 312, 453, 868
NdeII GATC 6 cut(s) 127, 216, 229, 435, 811, 855
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 3 cut(s) 460, 757, 833
NlaIV GGNNCC 3 cut(s) 400, 720, 975
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 2 cut(s) 655, 923
NruI TCGCGA 2 cut(s) 312, 453
NspI RCATGY 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PctI GAATGC 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 164
Pfl23II CGTACG 1 cut(s) 918
PkrI GCNGC 9 cut(s) 35, 57, 260, 263, 533, 570, 613, 622, 932
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 604
PshAI GACNNNNGTC 1 cut(s) 881
Psp124BI GAGCTC 2 cut(s) 348, 846
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 986
PspEI GGTNACC 1 cut(s) 923
PspGI CCWGG 1 cut(s) 986
PspLI CGTACG 1 cut(s) 918
PspN4I GGNNCC 3 cut(s) 400, 720, 975
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 890
PstNI CAGNNNCTG 1 cut(s) 261
PvuI CGATCG 1 cut(s) 130
RruI TCGCGA 2 cut(s) 312, 453
RsaI GTAC 2 cut(s) 22, 920
RsaNI GTAC 2 cut(s) 21, 919
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 2 cut(s) 348, 846
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 9 cut(s) 34, 56, 259, 262, 532, 569, 612, 621, 931
Sau3AI GATC 6 cut(s) 127, 216, 229, 435, 811, 855
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 988
SduI GDGCHC 3 cut(s) 348, 506, 846
SfcI CTRYAG 1 cut(s) 886
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 3 cut(s) 266, 341, 624
SmoI CTYRAG 3 cut(s) 266, 341, 624
Sse9I AATT 2 cut(s) 462, 731
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 81, 636
SstI GAGCTC 2 cut(s) 348, 846
StyD4I CCNGG 1 cut(s) 986
StyI CCWWGG 1 cut(s) 748
TaaI ACNGT 3 cut(s) 393, 655, 923
TaiI ACGT 4 cut(s) 159, 321, 492, 606
TaqI TCGA 5 cut(s) 126, 148, 159, 215, 342
TaqII GACCGA 1 cut(s) 893
TasI AATT 2 cut(s) 462, 731
TauI GCSGC 5 cut(s) 36, 58, 261, 534, 623
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 3 cut(s) 646, 670, 821
TseFI GTSAC 2 cut(s) 655, 923
TseI GCWGC 4 cut(s) 261, 568, 611, 930
Tsp45I GTSAC 2 cut(s) 655, 923
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 3 cut(s) 296, 370, 612
TspRI CASTG 3 cut(s) 646, 670, 821
VpaK11BI GGWCC 1 cut(s) 169
XceI RCATGY 1 cut(s) 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 827
XhoI CTCGAG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 2 cut(s) 81, 636
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.