Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000609.1

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1077

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

caaaaggtgtacgttcaaggagggaagaaagaggaagtgccacttgaactggaggtgttcaaccagggaatgttcaagactgaactctgcaacaaatggcaggagtctggtgactgcccctacaaagaccactgccaatttgctcacggtgtggaggagctgcgcccggtgattcgccacccgcgctacaagaccgaggtctgcagaatggtgctagccggtgatgtctgtccatatggccatcgctgccattttcgccacgcgctcactgaggaggagaaggagcttgctggtggcaacaatacgcccagcaggccaatcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

108

Amino Acids

12.51

Weight (kDa)

7.15

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	184, 263
AciI	CCGC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	238
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	17, 47, 61, 76
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	2 cut(s)	160, 286
AluI	AGCT	2 cut(s)	160, 286
AoxI	GGCC	2 cut(s)	238, 314
ApeKI	GCWGC	2 cut(s)	160, 246
AspLEI	GCGC	3 cut(s)	165, 186, 265
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	122, 181, 233
AsuNHI	GCTAGC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	147, 233
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	161, 247
BlsI	GCNGC	2 cut(s)	162, 248
Bme1390I	CCNGG	2 cut(s)	65, 167
BmrFI	CCNGG	2 cut(s)	65, 167
BmtI	GCTAGC	1 cut(s)	218
BoxI	GACNNNNGTC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	64, 195
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	64, 195
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	3 cut(s)	170, 287, 290
BseXI	GCAGC	2 cut(s)	147, 233
BseYI	CCCAGC	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	184, 263
BshFI	GGCC	2 cut(s)	240, 316
BsiSI	CCGG	2 cut(s)	167, 219
BsnI	GGCC	2 cut(s)	240, 316
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	240, 316
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	184, 263
BspMAI	CTGCAG	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	64, 195
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	216, 288, 314
BstDEI	CTNAG	1 cut(s)	270
BstFNI	CGCG	2 cut(s)	184, 263
BstHHI	GCGC	3 cut(s)	165, 186, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 246, 255, 313
BstNI	CCWGG	1 cut(s)	65
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	63, 165
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	2 cut(s)	184, 263
BstV1I	GCAGC	2 cut(s)	147, 233
BsuRI	GGCC	2 cut(s)	240, 316
BtgZI	GCGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	130, 267
Cac8I	GCNNGC	3 cut(s)	216, 288, 314
CfoI	GCGC	3 cut(s)	165, 186, 265
Cfr10I	RCCGGY	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	5 cut(s)	160, 218, 240, 286, 316
CviKI_1	RGCY	5 cut(s)	160, 218, 240, 286, 316
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	270
DraIII	CACNNNGTG	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	63
FaiI	YATR	2 cut(s)	235, 237
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	161, 247
Fsp4HI	GCNGC	2 cut(s)	161, 247
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	3 cut(s)	164, 185, 264
GluI	GCNGC	2 cut(s)	161, 247
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	240, 316
HapII	CCGG	2 cut(s)	167, 219
HhaI	GCGC	3 cut(s)	165, 186, 265
Hin6I	GCGC	3 cut(s)	163, 184, 263
HinP1I	GCGC	3 cut(s)	163, 184, 263
HinfI	GANTC	2 cut(s)	104, 172
HpaII	CCGG	2 cut(s)	167, 219
HphI	GGTGA	3 cut(s)	122, 181, 233
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	90, 204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 246, 255, 313
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	12
HspAI	GCGC	3 cut(s)	163, 184, 263
LmnI	GCTCC	2 cut(s)	157, 283
Lsp1109I	GCAGC	2 cut(s)	147, 233
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	1 cut(s)	37
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	14, 25, 46, 148, 190, 265, 268
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	240
MspI	CCGG	2 cut(s)	167, 219
MspR9I	CCNGG	2 cut(s)	65, 167
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	184, 263
MwoI	GCNNNNNNNGC	4 cut(s)	183, 246, 255, 313
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	162, 248
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshAI	GACNNNNGTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	2 cut(s)	161, 247
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	65, 167
SetI	ASST	7 cut(s)	9, 15, 57, 162, 201, 288, 326
SfcI	CTRYAG	1 cut(s)	202
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	63, 165
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	172
TscAI	CASTG	2 cut(s)	137, 274
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	160, 246
Tsp45I	GTSAC	1 cut(s)	110
TspRI	CASTG	2 cut(s)	137, 274
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.