Prupe.1G318500_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
30614504 .. 30617644
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G318500.2

Sequence Viewer

Length: 1002 bp
ATGCACAACGACACCGCCTCCTCCACCGCCAATGGCGGCCTCGCCACCTCATTGCCGTTCAAATCGCCGCCTCGCTCAGACGACGCCGTGTTCTCTTCCCTCTATTCCGCCATCTTCGATCGCAAGCCGTCCCTCGCTCGATACAACGAATCGGAGCCCGACGCGTCCTCAAATCACCCCCACCGCCAACTCTACCACTCTCTCCTTGTCCAAGACCACCAGGAGATGGTCAACCGCCATAGCCGCACCCTCCAGCAACTCCACGAAGCCTCCGAGGAAGCCGACGCTCTCCGCCGCGAGAACATTCATCTCCGCGCCCTCAATCTCGAGCTCAACAAGCATCTCAGTCTCCTTATCCACTCCTCCGTCCAGAAACAGTTCGTTTCCCCCGGTTCTGTGGAGACAACACCGTTTGGGATCGTAAATAGGCTTCACGGCATGAGTATTGATGACAAACGAGCAGAGGAGGATGAGTCCGACGAGAGCCCTACCAGCGTGATCGAGAGCGAAGGCGCCGACGCCGAGAATATTGATGTGGAGAGGTTTACGCTGCCTAAGAGCATATCTGTGAGGTCTAATGGATACGTGAAGGTTGCTCAGCCCGGTACTAGCACTGCCGCTGGGACTCGGGCCGCGACTCGGCCTCGCACCGCCAATACATTCAACGCTTCACAAAAGGTGTACGTTCCTGCTGGAGGGATTAAGAAGCAGGAGCCACTTGAATTGGAGGTGTACAACCAAGGCATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGATCGGTGAATGCCCTTACGGAGAACACTGCCAATTTGCACATGGGATTGAGGAGCTCCGCCCAGTGATTCGACACCCACGCTACAAGACGGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGCCTGCCCATATGGTCACCGATGTCACTTCCGCCACGCCCTCACTGAGAATGAGAAGTTCATGGGTCCAAATAAGCCCAGGGCAATGAAGCTGGCCAGGTAA

Protein Analysis

334

Amino Acids

37.28

Weight (kDa)

6.79

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 226
AccII CGCG 4 cut(s) 164, 297, 315, 635
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 993
AcyI GRCGYC 3 cut(s) 84, 513, 519
AfaI GTAC 3 cut(s) 607, 683, 734
AfiI CCNNNNNNNGG 3 cut(s) 226, 639, 695
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 4 cut(s) 61, 664, 722, 751
AjnI CCWGG 3 cut(s) 219, 977, 995
AluBI AGCT 3 cut(s) 331, 835, 991
AluI AGCT 3 cut(s) 331, 835, 991
Alw21I GWGCWC 2 cut(s) 333, 837
Alw26I GTCTC 2 cut(s) 353, 395
AlwI GGATC 1 cut(s) 425
Ama87I CYCGRG 2 cut(s) 326, 627
AoxI GGCC 4 cut(s) 37, 630, 641, 993
ApeKI GCWGC 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 2 cut(s) 317, 515
AspS9I GGNCC 3 cut(s) 630, 886, 965
AsuC2I CCSGG 2 cut(s) 390, 603
AsuHPI GGTGA 3 cut(s) 167, 797, 908
AvaI CYCGRG 2 cut(s) 326, 627
AvaII GGWCC 2 cut(s) 886, 965
BalI TGGCCA 1 cut(s) 995
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 4 cut(s) 159, 333, 488, 837
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
Bbv12I GWGCWC 2 cut(s) 333, 837
BbvI GCAGC 1 cut(s) 537
BccI CCATC 3 cut(s) 119, 220, 877
BceAI ACGGC 4 cut(s) 40, 71, 112, 451
BciT130I CCWGG 3 cut(s) 221, 979, 997
BciVI GTATCC 1 cut(s) 575
BcnI CCSGG 2 cut(s) 390, 603
BcoDI GTCTC 2 cut(s) 353, 395
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 877
BfoI RGCGCY 1 cut(s) 516
BfuI GTATCC 1 cut(s) 575
BisI GCNGC 7 cut(s) 37, 68, 244, 295, 551, 618, 633
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 7 cut(s) 38, 69, 245, 296, 552, 619, 634
Bme1390I CCNGG 5 cut(s) 221, 390, 603, 979, 997
Bme18I GGWCC 2 cut(s) 886, 965
BmeT110I CYCGRG 2 cut(s) 326, 627
BmgT120I GGNCC 3 cut(s) 630, 886, 965
BmiI GGNNCC 4 cut(s) 156, 514, 714, 966
BmrFI CCNGG 5 cut(s) 221, 390, 603, 979, 997
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 836
BoxI GACNNNNGTC 1 cut(s) 872
BpmI CTGGAG 2 cut(s) 236, 714
Bpu1102I GCTNAGC 1 cut(s) 597
BpuMI CCSGG 2 cut(s) 390, 603
BsaAI YACGTR 1 cut(s) 586
BsaHI GRCGYC 3 cut(s) 84, 513, 519
BsaJI CCNNGG 5 cut(s) 273, 388, 739, 977, 978
BsaXI ACNNNNNCTCC 5 cut(s) 32, 254, 284, 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 639, 695
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 2 cut(s) 50, 990
BseBI CCWGG 3 cut(s) 221, 979, 997
BseDI CCNNGG 5 cut(s) 273, 388, 739, 977, 978
BseGI GGATG 2 cut(s) 475, 888
BseLI CCNNNNNNNGG 3 cut(s) 226, 639, 695
BseMI GCAATG 2 cut(s) 50, 990
BseMII CTCAG 4 cut(s) 90, 358, 611, 936
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 4 cut(s) 10, 352, 479, 845
BseXI GCAGC 1 cut(s) 537
BseYI CCCAGC 1 cut(s) 620
Bsh1236I CGCG 4 cut(s) 164, 297, 315, 635
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 4 cut(s) 39, 632, 643, 995
BshNI GGYRCC 1 cut(s) 512
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 333, 837
BsiHKCI CYCGRG 2 cut(s) 326, 627
BsiSI CCGG 2 cut(s) 390, 603
BslFI GGGAC 2 cut(s) 115, 637
BslI CCNNNNNNNGG 3 cut(s) 226, 639, 695
BsmAI GTCTC 2 cut(s) 353, 395
BsmFI GGGAC 2 cut(s) 115, 637
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 4 cut(s) 39, 632, 643, 995
BsoBI CYCGRG 2 cut(s) 326, 627
Bsp1286I GDGCHC 4 cut(s) 159, 333, 488, 837
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 4 cut(s) 118, 417, 498, 780
Bsp1720I GCTNAGC 1 cut(s) 597
BspANI GGCC 4 cut(s) 39, 632, 643, 995
BspCNI CTCAG 4 cut(s) 89, 357, 610, 937
BspFNI CGCG 4 cut(s) 164, 297, 315, 635
BspLI GGNNCC 4 cut(s) 156, 514, 714, 966
BspMAI CTGCAG 1 cut(s) 881
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 512
BsrDI GCAATG 2 cut(s) 50, 990
BsrGI TGTACA 1 cut(s) 732
BsrI ACTGG 1 cut(s) 842
BssECI CCNNGG 5 cut(s) 273, 388, 739, 977, 978
BssMI GATC 4 cut(s) 118, 417, 498, 780
BssNI GRCGYC 3 cut(s) 84, 513, 519
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 3 cut(s) 221, 979, 997
Bst4CI ACNGT 2 cut(s) 378, 411
Bst6I CTCTTC 1 cut(s) 100
BstACI GRCGYC 3 cut(s) 84, 513, 519
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 1 cut(s) 586
BstC8I GCNNGC 3 cut(s) 125, 904, 993
BstDEI CTNAG 5 cut(s) 76, 344, 555, 597, 945
BstEII GGTNACC 1 cut(s) 914
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 2 cut(s) 475, 888
BstFNI CGCG 4 cut(s) 164, 297, 315, 635
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 317, 515
BstKTI GATC 4 cut(s) 121, 420, 501, 783
BstMAI GTCTC 2 cut(s) 353, 395
BstMBI GATC 4 cut(s) 118, 417, 498, 780
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 243, 337, 492, 899
BstNI CCWGG 3 cut(s) 221, 979, 997
BstNSI RCATGY 1 cut(s) 748
BstPAI GACNNNNGTC 1 cut(s) 872
BstPI GGTNACC 1 cut(s) 914
BstSCI CCNGG 5 cut(s) 219, 388, 601, 977, 995
BstSFI CTRYAG 1 cut(s) 877
BstUI CGCG 4 cut(s) 164, 297, 315, 635
BstV1I GCAGC 1 cut(s) 537
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 4 cut(s) 39, 632, 643, 995
BtsCI GGATG 2 cut(s) 475, 888
BtsI GCAGTG 2 cut(s) 612, 805
BtsIMutI CAGTG 4 cut(s) 612, 805, 849, 942
Cac8I GCNNGC 3 cut(s) 125, 904, 993
CfoI GCGC 2 cut(s) 317, 515
Cfr13I GGNCC 3 cut(s) 630, 886, 965
CseI GACGC 5 cut(s) 92, 153, 170, 293, 527
Csp6I GTAC 3 cut(s) 606, 682, 733
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 4 cut(s) 439, 745, 821, 961
CviQI GTAC 3 cut(s) 606, 682, 733
DdeI CTNAG 5 cut(s) 76, 344, 555, 597, 945
DinI GGCGCC 1 cut(s) 514
DpnI GATC 4 cut(s) 120, 419, 500, 782
DpnII GATC 4 cut(s) 118, 417, 498, 780
EaeI YGGCCR 1 cut(s) 993
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 4 cut(s) 97, 281, 827, 920
Ecl136II GAGCTC 2 cut(s) 331, 835
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 4 cut(s) 159, 333, 488, 837
Eco47I GGWCC 2 cut(s) 886, 965
Eco53kI GAGCTC 2 cut(s) 331, 835
Eco88I CYCGRG 2 cut(s) 326, 627
Eco91I GGTNACC 1 cut(s) 914
EcoICRI GAGCTC 2 cut(s) 331, 835
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoO65I GGTNACC 1 cut(s) 914
EcoRII CCWGG 3 cut(s) 219, 977, 995
EcoT14I CCWWGG 1 cut(s) 739
EcoT38I GRGCYC 4 cut(s) 159, 333, 488, 837
EgeI GGCGCC 1 cut(s) 514
EheI GGCGCC 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 4 cut(s) 442, 748, 824, 964
FaiI YATR 8 cut(s) 240, 440, 563, 746, 822, 910, 912, 962
FaqI GGGAC 2 cut(s) 115, 637
FatI CATG 4 cut(s) 438, 744, 820, 960
FauNDI CATATG 1 cut(s) 910
Fnu4HI GCNGC 7 cut(s) 37, 68, 244, 295, 551, 618, 633
FokI GGATG 2 cut(s) 482, 895
FriOI GRGCYC 4 cut(s) 159, 333, 488, 837
Fsp4HI GCNGC 7 cut(s) 37, 68, 244, 295, 551, 618, 633
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 316, 514
GluI GCNGC 7 cut(s) 37, 68, 244, 295, 551, 618, 633
GsaI CCCAGC 1 cut(s) 624
GsuI CTGGAG 2 cut(s) 236, 714
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 4 cut(s) 39, 632, 643, 995
HapII CCGG 2 cut(s) 390, 603
HgaI GACGC 5 cut(s) 92, 153, 170, 293, 527
HhaI GCGC 2 cut(s) 317, 515
Hin1I GRCGYC 3 cut(s) 84, 513, 519
Hin1II CATG 4 cut(s) 442, 748, 824, 964
Hin6I GCGC 2 cut(s) 315, 513
HinP1I GCGC 2 cut(s) 315, 513
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 149, 473, 625, 637, 847
HpaII CCGG 2 cut(s) 390, 603
HphI GGTGA 3 cut(s) 167, 797, 908
Hpy166II GTNNAC 4 cut(s) 232, 546, 682, 733
Hpy188I TCNGA 4 cut(s) 79, 154, 274, 478
Hpy188III TCNNGA 4 cut(s) 326, 370, 502, 751
Hpy8I GTNNAC 4 cut(s) 232, 546, 682, 733
Hpy99I CGWCG 5 cut(s) 86, 164, 287, 482, 521
HpyAV CCTTC 2 cut(s) 503, 583
HpyCH4III ACNGT 2 cut(s) 378, 411
HpyCH4IV ACGT 2 cut(s) 585, 684
HpyCH4V TGCA 4 cut(s) 4, 765, 818, 879
HpyF10VI GCNNNNNNNGC 4 cut(s) 243, 337, 492, 899
HpyF3I CTNAG 5 cut(s) 76, 344, 555, 597, 945
HpySE526I ACGT 2 cut(s) 585, 684
Hsp92I GRCGYC 3 cut(s) 84, 513, 519
Hsp92II CATG 4 cut(s) 442, 748, 824, 964
HspAI GCGC 2 cut(s) 315, 513
KasI GGCGCC 1 cut(s) 512
Kzo9I GATC 4 cut(s) 118, 417, 498, 780
LmnI GCTCC 4 cut(s) 154, 712, 832, 840
Lsp1109I GCAGC 1 cut(s) 537
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 609
MaeII ACGT 2 cut(s) 585, 684
MaeIII GTNAC 2 cut(s) 914, 923
MalI GATC 4 cut(s) 120, 419, 500, 782
MboI GATC 4 cut(s) 118, 417, 498, 780
MboII GAAGA 2 cut(s) 87, 106
MhlI GDGCHC 4 cut(s) 159, 333, 488, 837
MlsI TGGCCA 1 cut(s) 995
MluCI AATT 2 cut(s) 722, 812
MluI ACGCGT 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 995
Mly113I GGCGCC 1 cut(s) 513
MlyI GAGTC 3 cut(s) 482, 619, 631
MmeI TCCRAC 1 cut(s) 501
Mox20I TGGCCA 1 cut(s) 995
MroXI GAANNNNTTC 1 cut(s) 377
MscI TGGCCA 1 cut(s) 995
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 566
Msp20I TGGCCA 1 cut(s) 995
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 390, 603
MspR9I CCNGG 5 cut(s) 221, 390, 603, 979, 997
Mva1269I GAATGC 1 cut(s) 794
MvaI CCWGG 3 cut(s) 221, 979, 997
MvnI CGCG 4 cut(s) 164, 297, 315, 635
MwoI GCNNNNNNNGC 4 cut(s) 243, 337, 492, 899
NarI GGCGCC 1 cut(s) 513
NciI CCSGG 2 cut(s) 390, 603
NdeI CATATG 1 cut(s) 910
NdeII GATC 4 cut(s) 118, 417, 498, 780
NlaIII CATG 4 cut(s) 442, 748, 824, 964
NlaIV GGNNCC 4 cut(s) 156, 514, 714, 966
NmeAIII GCCGAG 2 cut(s) 547, 619
NmuCI GTSAC 2 cut(s) 914, 923
NspI RCATGY 1 cut(s) 748
PaeR7I CTCGAG 1 cut(s) 326
PasI CCCWGGG 1 cut(s) 978
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 2 cut(s) 149, 847
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 7 cut(s) 38, 69, 245, 296, 552, 619, 634
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 3 cut(s) 481, 619, 631
PluTI GGCGCC 1 cut(s) 516
PpsI GAGTC 3 cut(s) 481, 619, 631
Ppu21I YACGTR 1 cut(s) 586
PshAI GACNNNNGTC 1 cut(s) 872
Psp124BI GAGCTC 2 cut(s) 333, 837
Psp6I CCWGG 3 cut(s) 219, 977, 995
PspEI GGTNACC 1 cut(s) 914
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 3 cut(s) 219, 977, 995
PspN4I GGNNCC 4 cut(s) 156, 514, 714, 966
PspPI GGNCC 3 cut(s) 630, 886, 965
PstI CTGCAG 1 cut(s) 881
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 3 cut(s) 607, 683, 734
RsaNI GTAC 3 cut(s) 606, 682, 733
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 2 cut(s) 333, 837
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 7 cut(s) 37, 68, 244, 295, 551, 618, 633
Sau3AI GATC 4 cut(s) 118, 417, 498, 780
Sau96I GGNCC 3 cut(s) 630, 886, 965
SchI GAGTC 3 cut(s) 482, 619, 631
ScrFI CCNGG 5 cut(s) 221, 390, 603, 979, 997
SduI GDGCHC 4 cut(s) 159, 333, 488, 837
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 877
SfoI GGCGCC 1 cut(s) 514
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 2 cut(s) 886, 965
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 2 cut(s) 722, 812
SspDI GGCGCC 1 cut(s) 512
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 2 cut(s) 333, 837
StyD4I CCNGG 5 cut(s) 219, 388, 601, 977, 995
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 2 cut(s) 378, 411
TaiI ACGT 2 cut(s) 588, 687
TaqI TCGA 5 cut(s) 117, 139, 327, 501, 850
TasI AATT 2 cut(s) 722, 812
TatI WGTACW 1 cut(s) 732
TauI GCSGC 6 cut(s) 39, 70, 246, 297, 620, 635
TfiI GAWTC 2 cut(s) 149, 847
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 4 cut(s) 619, 812, 849, 949
TseFI GTSAC 2 cut(s) 914, 923
TseI GCWGC 1 cut(s) 550
Tsp45I GTSAC 2 cut(s) 914, 923
TspDTI ATGAA 3 cut(s) 296, 949, 1001
TspGWI ACGGA 3 cut(s) 355, 813, 884
TspRI CASTG 4 cut(s) 619, 812, 849, 949
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 886, 965
XagI CCTNNNNNAGG 1 cut(s) 693
XceI RCATGY 1 cut(s) 748
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XhoI CTCGAG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.