Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

50039541 .. 50041048

Gene Structure 1508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG337200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACAGCAAGTCGTCGGCTCAAGAGGAAGAGGAAGAGGAATTGAGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCTGTGACTGCTGCTACCAACGCCGCCGCTCGGACTCGGACCGCGGCCAGATCTCGAATCGCCAAGGAAATCAGTGCTTCACAAAAGGTGTACGTTCAAGGAGGGAAGAAAGAGGAGGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGCGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCATCGCTGCCATTTTCGCCACGCGCTCACTGAGGAGGAGAAGGAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCAATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

259

Amino Acids

29.01

Weight (kDa)

6.57

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	176 - 201	6.2e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AccBSI	CCGCTC	1 cut(s)	401
AccII	CGCG	4 cut(s)	213, 416, 637, 716
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	2 cut(s)	417, 691
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	604
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	40, 43, 402
AgsI	TTSAA	5 cut(s)	168, 470, 500, 514, 529
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	516
AluBI	AGCT	6 cut(s)	106, 161, 171, 367, 613, 739
AluI	AGCT	6 cut(s)	106, 161, 171, 367, 613, 739
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	21
AoxI	GGCC	5 cut(s)	214, 294, 417, 691, 767
ApeKI	GCWGC	4 cut(s)	325, 383, 613, 699
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	4 cut(s)	33, 618, 639, 718
AspS9I	GGNCC	2 cut(s)	348, 411
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	4 cut(s)	355, 575, 634, 686
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	2 cut(s)	348, 411
BalI	TGGCCA	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	312, 370, 600, 686
BccI	CCATC	2 cut(s)	149, 702
BceAI	ACGGC	4 cut(s)	54, 172, 370, 616
BciT130I	CCWGG	1 cut(s)	518
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	668
BfmI	CTRYAG	1 cut(s)	655
BfoI	RGCGCY	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	766
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 614, 700
BlsI	GCNGC	9 cut(s)	46, 215, 327, 385, 397, 400, 418, 615, 701
Bme1390I	CCNGG	2 cut(s)	518, 620
Bme18I	GGWCC	2 cut(s)	348, 411
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	348, 411
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	518, 620
BmtI	GCTAGC	1 cut(s)	671
BoxI	GACNNNNGTC	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	414, 435, 517, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 43, 402
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	4 cut(s)	414, 435, 517, 648
BseGI	GGATG	2 cut(s)	129, 141
BseLI	CCNNNNNNNGG	3 cut(s)	40, 43, 402
BseMII	CTCAG	2 cut(s)	133, 714
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	5 cut(s)	116, 500, 623, 740, 743
BseXI	GCAGC	4 cut(s)	312, 370, 600, 686
BseYI	CCCAGC	1 cut(s)	761
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	4 cut(s)	213, 416, 637, 716
BshFI	GGCC	5 cut(s)	216, 296, 419, 693, 769
BshNI	GGYRCC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	620, 672
BslI	CCNNNNNNNGG	3 cut(s)	40, 43, 402
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	5 cut(s)	216, 296, 419, 693, 769
Bsp143I	GATC	4 cut(s)	153, 195, 271, 422
BspANI	GGCC	5 cut(s)	216, 296, 419, 693, 769
BspCNI	CTCAG	2 cut(s)	132, 715
BspFNI	CGCG	4 cut(s)	213, 416, 637, 716
BspLI	GGNNCC	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	659
BspOI	GCTAGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	490
BsrBI	CCGCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	4 cut(s)	414, 435, 517, 648
BssMI	GATC	4 cut(s)	153, 195, 271, 422
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	518
Bst6I	CTCTTC	4 cut(s)	246, 252, 285, 326
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	669, 741, 767
BstDEI	CTNAG	2 cut(s)	119, 723
BstDSI	CCRYGG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	129, 141
BstFNI	CGCG	4 cut(s)	213, 416, 637, 716
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	4 cut(s)	33, 618, 639, 718
BstKTI	GATC	4 cut(s)	156, 198, 274, 425
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	153, 195, 271, 422
BstNI	CCWGG	1 cut(s)	518
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	516, 618
BstSFI	CTRYAG	1 cut(s)	655
BstUI	CGCG	4 cut(s)	213, 416, 637, 716
BstV1I	GCAGC	4 cut(s)	312, 370, 600, 686
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	5 cut(s)	216, 296, 419, 693, 769
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	2 cut(s)	129, 141
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	451, 583, 720
Cac8I	GCNNGC	3 cut(s)	669, 741, 767
CaiI	CAGNNNCTG	1 cut(s)	21
CfoI	GCGC	4 cut(s)	33, 618, 639, 718
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	348, 411
Cfr42I	CCGCGG	1 cut(s)	417
CpoI	CGGWCCG	1 cut(s)	411
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	463
CspI	CGGWCCG	1 cut(s)	411
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	2 cut(s)	119, 723
DpnI	GATC	4 cut(s)	155, 197, 273, 424
DpnII	GATC	4 cut(s)	153, 195, 271, 422
DraIII	CACNNNGTG	1 cut(s)	604
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	417, 691
Eam1104I	CTCTTC	4 cut(s)	246, 252, 285, 326
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	4 cut(s)	246, 252, 285, 326
EciI	GGCGGA	2 cut(s)	56, 62
Eco130I	CCWWGG	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	348, 411
Eco57I	CTGAAG	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaiI	YATR	3 cut(s)	338, 688, 690
FauI	CCCGC	1 cut(s)	642
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 614, 700
FokI	GGATG	2 cut(s)	116, 128
Fsp4HI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 614, 700
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	4 cut(s)	32, 617, 638, 717
GluI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 614, 700
GsaI	CCCAGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	524
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	216, 296, 419, 693, 769
HapII	CCGG	2 cut(s)	620, 672
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	4 cut(s)	33, 618, 639, 718
Hin6I	GCGC	4 cut(s)	31, 616, 637, 716
HinP1I	GCGC	4 cut(s)	31, 616, 637, 716
HincII	GTYRAC	3 cut(s)	7, 97, 202
HindII	GTYRAC	3 cut(s)	7, 97, 202
HindIII	AAGCTT	2 cut(s)	159, 365
HinfI	GANTC	5 cut(s)	277, 406, 429, 557, 625
HpaII	CCGG	2 cut(s)	620, 672
HphI	GGTGA	4 cut(s)	355, 575, 634, 686
Hpy166II	GTNNAC	4 cut(s)	7, 97, 202, 463
Hpy188I	TCNGA	4 cut(s)	276, 282, 405, 411
Hpy188III	TCNNGA	4 cut(s)	145, 245, 426, 529
Hpy8I	GTNNAC	4 cut(s)	7, 97, 202, 463
Hpy99I	CGWCG	4 cut(s)	62, 104, 241, 286
HpyAV	CCTTC	1 cut(s)	727
HpyCH4IV	ACGT	4 cut(s)	93, 99, 360, 465
HpyCH4V	TGCA	3 cut(s)	178, 543, 657
HpyF3I	CTNAG	2 cut(s)	119, 723
HpySE526I	ACGT	4 cut(s)	93, 99, 360, 465
HspAI	GCGC	4 cut(s)	31, 616, 637, 716
KspI	CCGCGG	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	153, 195, 271, 422
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	2 cut(s)	610, 736
Lsp1109I	GCAGC	4 cut(s)	312, 370, 600, 686
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	4 cut(s)	93, 99, 360, 465
MaeIII	GTNAC	2 cut(s)	376, 563
MalI	GATC	4 cut(s)	155, 197, 273, 424
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	4 cut(s)	153, 195, 271, 422
MboII	GAAGA	6 cut(s)	156, 263, 269, 302, 343, 490
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	4 cut(s)	207, 222, 263, 590
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	3 cut(s)	286, 400, 566
MmeI	TCCRAC	2 cut(s)	305, 375
Mox20I	TGGCCA	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	693
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	2 cut(s)	620, 672
MspR9I	CCNGG	2 cut(s)	518, 620
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	4 cut(s)	213, 416, 637, 716
NciI	CCSGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	4 cut(s)	153, 195, 271, 422
NheI	GCTAGC	1 cut(s)	667
NlaIV	GGNNCC	1 cut(s)	492
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	376, 563
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	429, 625
PkrI	GCNGC	9 cut(s)	46, 215, 327, 385, 397, 400, 418, 615, 701
PleI	GAGTC	3 cut(s)	285, 400, 565
PpsI	GAGTC	3 cut(s)	285, 400, 565
Ppu21I	YACGTR	1 cut(s)	361
PshAI	GACNNNNGTC	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	516
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	2 cut(s)	348, 411
PstI	CTGCAG	1 cut(s)	659
PstNI	CAGNNNCTG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	341
Rsr2I	CGGWCCG	1 cut(s)	411
RsrII	CGGWCCG	1 cut(s)	411
SacII	CCGCGG	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 614, 700
Sau3AI	GATC	4 cut(s)	153, 195, 271, 422
Sau96I	GGNCC	2 cut(s)	348, 411
SchI	GAGTC	3 cut(s)	286, 400, 566
ScrFI	CCNGG	2 cut(s)	518, 620
SfcI	CTRYAG	1 cut(s)	655
Sfr303I	CCGCGG	1 cut(s)	417
SgrBI	CCGCGG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	348, 411
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	207, 222, 263, 590
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	2 cut(s)	516, 618
StyI	CCWWGG	1 cut(s)	435
TaiI	ACGT	4 cut(s)	96, 102, 363, 468
TaqI	TCGA	3 cut(s)	102, 156, 427
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	4 cut(s)	207, 222, 263, 590
TauI	GCSGC	5 cut(s)	47, 216, 398, 401, 419
TfiI	GAWTC	2 cut(s)	429, 625
TscAI	CASTG	3 cut(s)	451, 590, 727
TseFI	GTSAC	2 cut(s)	376, 563
TseI	GCWGC	4 cut(s)	325, 383, 613, 699
Tsp45I	GTSAC	2 cut(s)	376, 563
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	451, 590, 727
VpaK11BI	GGWCC	2 cut(s)	348, 411
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	207
XspI	CTAG	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.