Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

60941074 .. 60942581

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACAGCAAGTCGTCGGCTCAAGAGGAAGAGGAAGAGGAATTGAGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCTGTGACTGCTGCTACCAACGCCGCCGCTCGGACTCGGACCGCGGCCAGATCTCGAATCGCCAAGGAAATCAGTGCTTCAGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGCGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCATCGCTGCCATTTTCGCCACGCGCTCACTGAGGAGGAGAAGGAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCAATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

225

Amino Acids

25.0

Weight (kDa)

6.56

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	401
AccII	CGCG	4 cut(s)	213, 416, 535, 614
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	2 cut(s)	417, 589
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	47, 435
AdeI	CACNNNGTG	1 cut(s)	502
AfiI	CCNNNNNNNGG	3 cut(s)	40, 43, 402
AgsI	TTSAA	1 cut(s)	168
AhdI	GACNNNNNGTC	1 cut(s)	232
AluBI	AGCT	6 cut(s)	106, 161, 171, 367, 511, 637
AluI	AGCT	6 cut(s)	106, 161, 171, 367, 511, 637
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	2 cut(s)	21, 458
AoxI	GGCC	5 cut(s)	214, 294, 417, 589, 665
ApeKI	GCWGC	4 cut(s)	325, 383, 511, 597
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	4 cut(s)	33, 516, 537, 616
AspS9I	GGNCC	2 cut(s)	348, 411
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	4 cut(s)	355, 473, 532, 584
AsuNHI	GCTAGC	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	348, 411
BalI	TGGCCA	1 cut(s)	591
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	312, 370, 498, 584
BccI	CCATC	2 cut(s)	149, 600
BceAI	ACGGC	4 cut(s)	54, 172, 370, 514
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	553
BfoI	RGCGCY	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 512, 598
BlsI	GCNGC	9 cut(s)	46, 215, 327, 385, 397, 400, 418, 513, 599
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	2 cut(s)	348, 411
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	348, 411
BmrFI	CCNGG	1 cut(s)	518
BmtI	GCTAGC	1 cut(s)	569
BoxI	GACNNNNGTC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	518
BsaAI	YACGTR	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	414, 435, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 43, 402
Bse118I	RCCGGY	1 cut(s)	569
BseDI	CCNNGG	3 cut(s)	414, 435, 546
BseGI	GGATG	2 cut(s)	129, 141
BseLI	CCNNNNNNNGG	3 cut(s)	40, 43, 402
BseMII	CTCAG	2 cut(s)	133, 612
BseRI	GAGGAG	4 cut(s)	116, 521, 638, 641
BseXI	GCAGC	4 cut(s)	312, 370, 498, 584
BseYI	CCCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	4 cut(s)	213, 416, 535, 614
BshFI	GGCC	5 cut(s)	216, 296, 419, 591, 667
BsiSI	CCGG	2 cut(s)	518, 570
BslI	CCNNNNNNNGG	3 cut(s)	40, 43, 402
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	5 cut(s)	216, 296, 419, 591, 667
Bsp143I	GATC	4 cut(s)	153, 195, 271, 422
BspANI	GGCC	5 cut(s)	216, 296, 419, 591, 667
BspCNI	CTCAG	2 cut(s)	132, 613
BspFNI	CGCG	4 cut(s)	213, 416, 535, 614
BspMAI	CTGCAG	1 cut(s)	557
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	3 cut(s)	414, 435, 546
BssMI	GATC	4 cut(s)	153, 195, 271, 422
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	38
Bst6I	CTCTTC	4 cut(s)	246, 252, 285, 326
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	567, 639, 665
BstDEI	CTNAG	2 cut(s)	119, 621
BstDSI	CCRYGG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	129, 141
BstFNI	CGCG	4 cut(s)	213, 416, 535, 614
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	4 cut(s)	33, 516, 537, 616
BstKTI	GATC	4 cut(s)	156, 198, 274, 425
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	153, 195, 271, 422
BstPAI	GACNNNNGTC	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	553
BstUI	CGCG	4 cut(s)	213, 416, 535, 614
BstV1I	GCAGC	4 cut(s)	312, 370, 498, 584
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	5 cut(s)	216, 296, 419, 591, 667
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	129, 141
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	451, 481, 618
Cac8I	GCNNGC	3 cut(s)	567, 639, 665
CaiI	CAGNNNCTG	2 cut(s)	21, 458
CfoI	GCGC	4 cut(s)	33, 516, 537, 616
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	348, 411
Cfr42I	CCGCGG	1 cut(s)	417
CpoI	CGGWCCG	1 cut(s)	411
CseI	GACGC	1 cut(s)	68
CspI	CGGWCCG	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	119, 621
DpnI	GATC	4 cut(s)	155, 197, 273, 424
DpnII	GATC	4 cut(s)	153, 195, 271, 422
DraIII	CACNNNGTG	1 cut(s)	502
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	417, 589
Eam1104I	CTCTTC	4 cut(s)	246, 252, 285, 326
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	4 cut(s)	246, 252, 285, 326
EciI	GGCGGA	2 cut(s)	56, 62
Eco130I	CCWWGG	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	348, 411
Eco57I	CTGAAG	2 cut(s)	47, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaiI	YATR	3 cut(s)	338, 586, 588
FauI	CCCGC	1 cut(s)	540
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 512, 598
FokI	GGATG	2 cut(s)	116, 128
Fsp4HI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 512, 598
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	4 cut(s)	32, 515, 536, 615
GluI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 512, 598
GsaI	CCCAGC	1 cut(s)	663
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	216, 296, 419, 591, 667
HapII	CCGG	2 cut(s)	518, 570
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	4 cut(s)	33, 516, 537, 616
Hin6I	GCGC	4 cut(s)	31, 514, 535, 614
HinP1I	GCGC	4 cut(s)	31, 514, 535, 614
HincII	GTYRAC	3 cut(s)	7, 97, 202
HindII	GTYRAC	3 cut(s)	7, 97, 202
HindIII	AAGCTT	2 cut(s)	159, 365
HinfI	GANTC	5 cut(s)	277, 406, 429, 455, 523
HpaII	CCGG	2 cut(s)	518, 570
HphI	GGTGA	4 cut(s)	355, 473, 532, 584
Hpy166II	GTNNAC	3 cut(s)	7, 97, 202
Hpy188I	TCNGA	5 cut(s)	276, 282, 405, 411, 454
Hpy188III	TCNNGA	3 cut(s)	145, 245, 426
Hpy8I	GTNNAC	3 cut(s)	7, 97, 202
Hpy99I	CGWCG	4 cut(s)	62, 104, 241, 286
HpyAV	CCTTC	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	93, 99, 360
HpyCH4V	TGCA	2 cut(s)	178, 555
HpyF3I	CTNAG	2 cut(s)	119, 621
HpySE526I	ACGT	3 cut(s)	93, 99, 360
HspAI	GCGC	4 cut(s)	31, 514, 535, 614
KspI	CCGCGG	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	153, 195, 271, 422
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	2 cut(s)	508, 634
Lsp1109I	GCAGC	4 cut(s)	312, 370, 498, 584
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	3 cut(s)	93, 99, 360
MaeIII	GTNAC	2 cut(s)	376, 461
MalI	GATC	4 cut(s)	155, 197, 273, 424
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	4 cut(s)	153, 195, 271, 422
MboII	GAAGA	5 cut(s)	156, 263, 269, 302, 343
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	4 cut(s)	207, 222, 263, 488
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	3 cut(s)	286, 400, 464
MmeI	TCCRAC	2 cut(s)	305, 375
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	2 cut(s)	518, 570
MspR9I	CCNGG	1 cut(s)	518
MunI	CAATTG	1 cut(s)	222
MvnI	CGCG	4 cut(s)	213, 416, 535, 614
NciI	CCSGG	1 cut(s)	518
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	4 cut(s)	153, 195, 271, 422
NheI	GCTAGC	1 cut(s)	565
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	376, 461
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	429, 523
PkrI	GCNGC	9 cut(s)	46, 215, 327, 385, 397, 400, 418, 513, 599
PleI	GAGTC	3 cut(s)	285, 400, 463
PpsI	GAGTC	3 cut(s)	285, 400, 463
Ppu21I	YACGTR	1 cut(s)	361
PshAI	GACNNNNGTC	1 cut(s)	548
PspFI	CCCAGC	1 cut(s)	659
PspPI	GGNCC	2 cut(s)	348, 411
PstI	CTGCAG	1 cut(s)	557
PstNI	CAGNNNCTG	2 cut(s)	21, 458
PsuI	RGATCY	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	341
Rsr2I	CGGWCCG	1 cut(s)	411
RsrII	CGGWCCG	1 cut(s)	411
SacII	CCGCGG	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	9 cut(s)	45, 214, 326, 384, 396, 399, 417, 512, 598
Sau3AI	GATC	4 cut(s)	153, 195, 271, 422
Sau96I	GGNCC	2 cut(s)	348, 411
SchI	GAGTC	3 cut(s)	286, 400, 464
ScrFI	CCNGG	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	553
Sfr303I	CCGCGG	1 cut(s)	417
SgrBI	CCGCGG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	348, 411
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	207, 222, 263, 488
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	1 cut(s)	435
TaiI	ACGT	3 cut(s)	96, 102, 363
TaqI	TCGA	3 cut(s)	102, 156, 427
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	4 cut(s)	207, 222, 263, 488
TauI	GCSGC	5 cut(s)	47, 216, 398, 401, 419
TfiI	GAWTC	2 cut(s)	429, 523
TscAI	CASTG	3 cut(s)	451, 488, 625
TseFI	GTSAC	2 cut(s)	376, 461
TseI	GCWGC	4 cut(s)	325, 383, 511, 597
Tsp45I	GTSAC	2 cut(s)	376, 461
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	451, 488, 625
VpaK11BI	GGWCC	2 cut(s)	348, 411
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	207
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.