Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

64023327 .. 64024807

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG329600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACGGCAAGTCGTCGGCTCAAGAGGAAGAGGAATTGAGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTGACCGCTGCTACCAACGCCGCCTCTCGGATTCAGACAGCGGCCAGATCTCGAATCGCCAAGGCAATCAGTGCTTCACAAAAGGTGTACGTTCAGGGAGGGAAGAAAGAGGAAGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGTGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCATCGCTGCCATTTTCGCCACGCGCTCACTGAGGAGGAGAAGGAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCAATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

257

Amino Acids

28.66

Weight (kDa)

7.14

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	174 - 199	6.1e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	213, 631, 710
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	2 cut(s)	411, 685
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	40, 43, 396
AgsI	TTSAA	4 cut(s)	168, 494, 508, 523
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	6 cut(s)	106, 161, 171, 361, 607, 733
AluI	AGCT	6 cut(s)	106, 161, 171, 361, 607, 733
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	21
AoxI	GGCC	5 cut(s)	214, 288, 411, 685, 761
ApeKI	GCWGC	4 cut(s)	319, 377, 607, 693
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	4 cut(s)	33, 612, 633, 712
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	5 cut(s)	349, 382, 569, 628, 680
AsuNHI	GCTAGC	1 cut(s)	661
AvaII	GGWCC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	687
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	306, 364, 594, 680
BccI	CCATC	2 cut(s)	149, 696
BceAI	ACGGC	4 cut(s)	54, 172, 244, 364
BciT130I	CCWGG	1 cut(s)	512
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	8 cut(s)	45, 214, 320, 378, 390, 411, 608, 694
BlsI	GCNGC	8 cut(s)	46, 215, 321, 379, 391, 412, 609, 695
Bme1390I	CCNGG	2 cut(s)	512, 614
Bme18I	GGWCC	1 cut(s)	342
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	512, 614
BmtI	GCTAGC	1 cut(s)	665
BoxI	GACNNNNGTC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	3 cut(s)	429, 511, 642
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 43, 396
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	3 cut(s)	429, 511, 642
BseGI	GGATG	2 cut(s)	129, 141
BseLI	CCNNNNNNNGG	3 cut(s)	40, 43, 396
BseMII	CTCAG	2 cut(s)	133, 708
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	4 cut(s)	116, 617, 734, 737
BseXI	GCAGC	4 cut(s)	306, 364, 594, 680
BseYI	CCCAGC	1 cut(s)	755
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	3 cut(s)	213, 631, 710
BshFI	GGCC	5 cut(s)	216, 290, 413, 687, 763
BsiSI	CCGG	3 cut(s)	368, 614, 666
BslI	CCNNNNNNNGG	3 cut(s)	40, 43, 396
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	5 cut(s)	216, 290, 413, 687, 763
Bsp143I	GATC	4 cut(s)	153, 195, 265, 416
BspANI	GGCC	5 cut(s)	216, 290, 413, 687, 763
BspCNI	CTCAG	2 cut(s)	132, 709
BspFNI	CGCG	3 cut(s)	213, 631, 710
BspMAI	CTGCAG	1 cut(s)	653
BspOI	GCTAGC	1 cut(s)	665
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	501
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	429, 511, 642
BssMI	GATC	4 cut(s)	153, 195, 265, 416
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	3 cut(s)	246, 279, 320
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	663, 735, 761
BstDEI	CTNAG	2 cut(s)	119, 717
BstEII	GGTNACC	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	129, 141
BstFNI	CGCG	3 cut(s)	213, 631, 710
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	4 cut(s)	33, 612, 633, 712
BstKTI	GATC	4 cut(s)	156, 198, 268, 419
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	153, 195, 265, 416
BstNI	CCWGG	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	644
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	510, 612
BstSFI	CTRYAG	1 cut(s)	649
BstUI	CGCG	3 cut(s)	213, 631, 710
BstV1I	GCAGC	4 cut(s)	306, 364, 594, 680
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	5 cut(s)	216, 290, 413, 687, 763
BtgZI	GCGATG	1 cut(s)	674
BtsCI	GGATG	2 cut(s)	129, 141
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	3 cut(s)	445, 577, 714
Cac8I	GCNNGC	3 cut(s)	663, 735, 761
CaiI	CAGNNNCTG	1 cut(s)	21
CfoI	GCGC	4 cut(s)	33, 612, 633, 712
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	342
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	457
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	119, 717
DpnI	GATC	4 cut(s)	155, 197, 267, 418
DpnII	GATC	4 cut(s)	153, 195, 265, 416
DraIII	CACNNNGTG	1 cut(s)	598
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	411, 685
Eam1104I	CTCTTC	3 cut(s)	246, 279, 320
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	246, 279, 320
EciI	GGCGGA	2 cut(s)	56, 62
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaiI	YATR	3 cut(s)	332, 682, 684
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FauI	CCCGC	1 cut(s)	636
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	8 cut(s)	45, 214, 320, 378, 390, 411, 608, 694
FokI	GGATG	2 cut(s)	116, 128
Fsp4HI	GCNGC	8 cut(s)	45, 214, 320, 378, 390, 411, 608, 694
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	4 cut(s)	32, 611, 632, 711
GluI	GCNGC	8 cut(s)	45, 214, 320, 378, 390, 411, 608, 694
GsaI	CCCAGC	1 cut(s)	759
GsuI	CTGGAG	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	216, 290, 413, 687, 763
HapII	CCGG	3 cut(s)	368, 614, 666
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	4 cut(s)	33, 612, 633, 712
Hin6I	GCGC	4 cut(s)	31, 610, 631, 710
HinP1I	GCGC	4 cut(s)	31, 610, 631, 710
HincII	GTYRAC	3 cut(s)	7, 97, 202
HindII	GTYRAC	3 cut(s)	7, 97, 202
HindIII	AAGCTT	2 cut(s)	159, 359
HinfI	GANTC	5 cut(s)	271, 400, 423, 551, 619
HpaII	CCGG	3 cut(s)	368, 614, 666
HphI	GGTGA	5 cut(s)	349, 382, 569, 628, 680
Hpy166II	GTNNAC	4 cut(s)	7, 97, 202, 457
Hpy188I	TCNGA	4 cut(s)	270, 276, 399, 405
Hpy188III	TCNNGA	4 cut(s)	145, 245, 420, 523
Hpy8I	GTNNAC	4 cut(s)	7, 97, 202, 457
Hpy99I	CGWCG	4 cut(s)	62, 104, 241, 280
HpyAV	CCTTC	1 cut(s)	721
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4IV	ACGT	4 cut(s)	93, 99, 354, 459
HpyCH4V	TGCA	3 cut(s)	178, 537, 651
HpyF3I	CTNAG	2 cut(s)	119, 717
HpySE526I	ACGT	4 cut(s)	93, 99, 354, 459
HspAI	GCGC	4 cut(s)	31, 610, 631, 710
Kzo9I	GATC	4 cut(s)	153, 195, 265, 416
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	604, 730
Lsp1109I	GCAGC	4 cut(s)	306, 364, 594, 680
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	4 cut(s)	93, 99, 354, 459
MaeIII	GTNAC	2 cut(s)	370, 557
MalI	GATC	4 cut(s)	155, 197, 267, 418
MboI	GATC	4 cut(s)	153, 195, 265, 416
MboII	GAAGA	5 cut(s)	156, 263, 296, 337, 484
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	4 cut(s)	207, 222, 257, 584
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	280, 560
MmeI	TCCRAC	2 cut(s)	299, 369
Mox20I	TGGCCA	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	2 cut(s)	377, 410
MspI	CCGG	3 cut(s)	368, 614, 666
MspR9I	CCNGG	2 cut(s)	512, 614
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	3 cut(s)	213, 631, 710
NciI	CCSGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	4 cut(s)	153, 195, 265, 416
NheI	GCTAGC	1 cut(s)	661
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	370, 557
PciSI	GCTCTTC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	400, 423, 619
PkrI	GCNGC	8 cut(s)	46, 215, 321, 379, 391, 412, 609, 695
PleI	GAGTC	2 cut(s)	279, 559
PpsI	GAGTC	2 cut(s)	279, 559
Ppu21I	YACGTR	1 cut(s)	355
PshAI	GACNNNNGTC	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	653
PstNI	CAGNNNCTG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	320
SatI	GCNGC	8 cut(s)	45, 214, 320, 378, 390, 411, 608, 694
Sau3AI	GATC	4 cut(s)	153, 195, 265, 416
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	2 cut(s)	280, 560
ScrFI	CCNGG	2 cut(s)	512, 614
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	207, 222, 257, 584
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	2 cut(s)	510, 612
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	596
TaiI	ACGT	4 cut(s)	96, 102, 357, 462
TaqI	TCGA	3 cut(s)	102, 156, 421
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	4 cut(s)	207, 222, 257, 584
TauI	GCSGC	4 cut(s)	47, 216, 392, 413
TfiI	GAWTC	3 cut(s)	400, 423, 619
TscAI	CASTG	3 cut(s)	445, 584, 721
TseFI	GTSAC	2 cut(s)	370, 557
TseI	GCWGC	4 cut(s)	319, 377, 607, 693
Tsp45I	GTSAC	2 cut(s)	370, 557
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	445, 584, 721
VpaK11BI	GGWCC	1 cut(s)	342
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	207
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.