Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

55238024 .. 55240433

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCACGTTACGACTTCAGTGCTTCTGGAGAATGCAAAACGACGTCGCCTATCCACGCCTCATATTTCATCGGAACCTCCGCAATGTCATCATCGCAGCCTCAACCGTACGGCGGTGTTTACAGCTCCGTTTACTCCTCCTCGATCTTCGGTCCAAAGCCTTCTTCCGTCGCACCTTACGGCTCTCTGCTGGTCCAAAACCGGCAGGAGATGGTCAACCGCCACAGCCTCTGCCTGAAGCGCCTCCACGAGGCGGCGGAGGAAGCCGACGCTCTCCGCCGTGAGAACAGCCACCTCCGCAACGTCAACGTCGAGCTGAACAAGCAACTCAGTCTCCTCATCCACGCCTCCATCCAGAAAGAGATCGAAGCTTCTTCAAGCTCTGTGCAGAGGTCGCCGTTTGGGATCGTCAACGGAATTCGCGGCCTGTCAATTGACGGCAAGTCGTCGGCTCAAGAGGAAGAGGAATTGAGCGGCGATCAGAGTCCGACGAGTGAAGAGGCCGAGAATGTTGATGTGGAGAGGATTTCGCTGCCGAAGAGCATATCGGTGAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTGACCGCTGCTACCAACGCCGCCGCTCGGATTCAGACAGCGGCCAGATCTCGAATCGCCAAGGCAATCAGTGCTTCACAAAAGGTGTACGTTCAAGGAGGGAAGAAAGAGGAAGTGCCACTTGAACTGGAGGTGTTCAACCAGGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAGTCTGGTGACTGCCCCTACAAAGACCACTGCCAATTTGCTCACGGTGTGGAGGAGCTGCGCCCGGTGATTCGCCACCCGCGCTACAAGACCGAGGTCTGCAGAATGGTGCTAGCCGGTGATGTCTGTCCATATGGCCATCGCTGCCATTTTCGCCACGCGCTCACTGAGGAGGAGAAGCAGCTTGCTGGTGGCAACAATACGCCCAGCAGGCCAATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

328

Amino Acids

36.15

Weight (kDa)

8.07

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	245 - 270	8.5e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccBSI	CCGCTC	2 cut(s)	474, 608
AccII	CGCG	3 cut(s)	423, 844, 923
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	2 cut(s)	624, 898
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	2 cut(s)	110, 671
AfiI	CCNNNNNNNGG	4 cut(s)	113, 250, 253, 609
AgsI	TTSAA	5 cut(s)	378, 677, 707, 721, 736
AhdI	GACNNNNNGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	723
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	7 cut(s)	126, 316, 371, 381, 574, 820, 946
AluI	AGCT	7 cut(s)	126, 316, 371, 381, 574, 820, 946
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	231
AoxI	GGCC	5 cut(s)	424, 501, 624, 898, 974
ApeKI	GCWGC	6 cut(s)	97, 532, 590, 820, 906, 943
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	4 cut(s)	243, 825, 846, 925
AspS9I	GGNCC	3 cut(s)	152, 193, 555
AsuC2I	CCSGG	1 cut(s)	827
AsuHPI	GGTGA	5 cut(s)	562, 595, 782, 841, 893
AsuNHI	GCTAGC	1 cut(s)	874
AvaII	GGWCC	3 cut(s)	152, 193, 555
BalI	TGGCCA	1 cut(s)	900
BauI	CACGAG	1 cut(s)	248
BbvI	GCAGC	6 cut(s)	109, 519, 577, 807, 893, 955
BccI	CCATC	3 cut(s)	205, 359, 909
BceAI	ACGGC	6 cut(s)	127, 196, 264, 382, 454, 577
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	875
BfmI	CTRYAG	1 cut(s)	862
BfoI	RGCGCY	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	973
BglII	AGATCT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	725, 827
Bme18I	GGWCC	3 cut(s)	152, 193, 555
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmgT120I	GGNCC	3 cut(s)	152, 193, 555
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	725, 827
BmtI	GCTAGC	1 cut(s)	878
BoxI	GACNNNNGTC	1 cut(s)	857
BpmI	CTGGAG	2 cut(s)	48, 731
BpuEI	CTTGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	827
BsaAI	YACGTR	1 cut(s)	568
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	642, 724, 855
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 250, 253, 609
Bse118I	RCCGGY	2 cut(s)	201, 878
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	642, 724, 855
BseGI	GGATG	2 cut(s)	339, 351
BseLI	CCNNNNNNNGG	4 cut(s)	113, 250, 253, 609
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	343, 921
BseNI	ACTGG	1 cut(s)	714
BseRI	GAGGAG	6 cut(s)	127, 130, 326, 830, 947, 950
BseXI	GCAGC	6 cut(s)	109, 519, 577, 807, 893, 955
BseYI	CCCAGC	1 cut(s)	968
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	3 cut(s)	423, 844, 923
BshFI	GGCC	5 cut(s)	426, 503, 626, 900, 976
BsiSI	CCGG	4 cut(s)	202, 581, 827, 879
BsiWI	CGTACG	1 cut(s)	108
BslI	CCNNNNNNNGG	4 cut(s)	113, 250, 253, 609
BsmAI	GTCTC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	5 cut(s)	426, 503, 626, 900, 976
Bsp143I	GATC	5 cut(s)	144, 363, 405, 478, 629
BspANI	GGCC	5 cut(s)	426, 503, 626, 900, 976
BspCNI	CTCAG	2 cut(s)	342, 922
BspFNI	CGCG	3 cut(s)	423, 844, 923
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	866
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	533
BsrBI	CCGCTC	2 cut(s)	474, 608
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	2 cut(s)	201, 878
BsrI	ACTGG	1 cut(s)	714
BssAI	RCCGGY	2 cut(s)	201, 878
BssECI	CCNNGG	3 cut(s)	642, 724, 855
BssMI	GATC	5 cut(s)	144, 363, 405, 478, 629
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	2 cut(s)	108, 809
Bst6I	CTCTTC	3 cut(s)	456, 492, 533
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	568
BstC8I	GCNNGC	3 cut(s)	876, 948, 974
BstDEI	CTNAG	2 cut(s)	329, 930
BstEII	GGTNACC	1 cut(s)	583
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	339, 351
BstFNI	CGCG	3 cut(s)	423, 844, 923
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	4 cut(s)	243, 825, 846, 925
BstKTI	GATC	5 cut(s)	147, 366, 408, 481, 632
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	5 cut(s)	144, 363, 405, 478, 629
BstNI	CCWGG	1 cut(s)	725
BstPAI	GACNNNNGTC	1 cut(s)	857
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	723, 825
BstSFI	CTRYAG	1 cut(s)	862
BstUI	CGCG	3 cut(s)	423, 844, 923
BstV1I	GCAGC	6 cut(s)	109, 519, 577, 807, 893, 955
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	5 cut(s)	426, 503, 626, 900, 976
BtgZI	GCGATG	2 cut(s)	78, 887
BtsCI	GGATG	2 cut(s)	339, 351
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	4 cut(s)	25, 658, 790, 927
Cac8I	GCNNGC	3 cut(s)	876, 948, 974
CaiI	CAGNNNCTG	1 cut(s)	231
CfoI	GCGC	4 cut(s)	243, 825, 846, 925
Cfr10I	RCCGGY	2 cut(s)	201, 878
Cfr13I	GGNCC	3 cut(s)	152, 193, 555
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	109, 670
CviQI	GTAC	2 cut(s)	109, 670
DdeI	CTNAG	2 cut(s)	329, 930
DpnI	GATC	5 cut(s)	146, 365, 407, 480, 631
DpnII	GATC	5 cut(s)	144, 363, 405, 478, 629
DraIII	CACNNNGTG	1 cut(s)	811
DriI	GACNNNNNGTC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	624, 898
Eam1104I	CTCTTC	3 cut(s)	456, 492, 533
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	3 cut(s)	456, 492, 533
EciI	GGCGGA	2 cut(s)	266, 272
Eco130I	CCWWGG	1 cut(s)	642
Eco47I	GGWCC	3 cut(s)	152, 193, 555
Eco57I	CTGAAG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	583
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaiI	YATR	4 cut(s)	64, 545, 895, 897
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FauI	CCCGC	1 cut(s)	849
FauNDI	CATATG	1 cut(s)	895
FokI	GGATG	2 cut(s)	326, 338
FspBI	CTAG	1 cut(s)	875
GlaI	GCGC	4 cut(s)	242, 824, 845, 924
GsaI	CCCAGC	1 cut(s)	972
GsuI	CTGGAG	2 cut(s)	48, 731
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	5 cut(s)	426, 503, 626, 900, 976
HapII	CCGG	4 cut(s)	202, 581, 827, 879
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	4 cut(s)	243, 825, 846, 925
Hin1I	GRCGYC	1 cut(s)	44
Hin6I	GCGC	4 cut(s)	241, 823, 844, 923
HinP1I	GCGC	4 cut(s)	241, 823, 844, 923
HincII	GTYRAC	3 cut(s)	217, 307, 412
HindII	GTYRAC	3 cut(s)	217, 307, 412
HindIII	AAGCTT	2 cut(s)	369, 572
HinfI	GANTC	5 cut(s)	484, 613, 636, 764, 832
HpaII	CCGG	4 cut(s)	202, 581, 827, 879
HphI	GGTGA	5 cut(s)	562, 595, 782, 841, 893
Hpy166II	GTNNAC	6 cut(s)	121, 133, 217, 307, 412, 670
Hpy188I	TCNGA	5 cut(s)	74, 483, 489, 612, 618
Hpy188III	TCNNGA	5 cut(s)	27, 355, 455, 633, 736
Hpy8I	GTNNAC	6 cut(s)	121, 133, 217, 307, 412, 670
Hpy99I	CGWCG	7 cut(s)	46, 49, 173, 272, 314, 451, 493
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	2 cut(s)	108, 809
HpyCH4IV	ACGT	6 cut(s)	7, 44, 303, 309, 567, 672
HpyCH4V	TGCA	4 cut(s)	36, 388, 750, 864
HpyF3I	CTNAG	2 cut(s)	329, 930
HpySE526I	ACGT	6 cut(s)	7, 44, 303, 309, 567, 672
Hsp92I	GRCGYC	1 cut(s)	44
HspAI	GCGC	4 cut(s)	241, 823, 844, 923
Kzo9I	GATC	5 cut(s)	144, 363, 405, 478, 629
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	131, 817
Lsp1109I	GCAGC	6 cut(s)	109, 519, 577, 807, 893, 955
MaeI	CTAG	1 cut(s)	875
MaeII	ACGT	6 cut(s)	7, 44, 303, 309, 567, 672
MaeIII	GTNAC	4 cut(s)	3, 8, 583, 770
MalI	GATC	5 cut(s)	146, 365, 407, 480, 631
MbiI	CCGCTC	2 cut(s)	474, 608
MboI	GATC	5 cut(s)	144, 363, 405, 478, 629
MboII	GAAGA	7 cut(s)	139, 156, 366, 473, 509, 550, 697
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	900
MluCI	AATT	4 cut(s)	417, 432, 467, 797
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	2 cut(s)	493, 773
MmeI	TCCRAC	2 cut(s)	512, 582
Mox20I	TGGCCA	1 cut(s)	900
MscI	TGGCCA	1 cut(s)	900
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	900
MspA1I	CMGCKG	2 cut(s)	590, 623
MspI	CCGG	4 cut(s)	202, 581, 827, 879
MspR9I	CCNGG	2 cut(s)	725, 827
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	3 cut(s)	423, 844, 923
NciI	CCSGG	1 cut(s)	827
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	5 cut(s)	144, 363, 405, 478, 629
NheI	GCTAGC	1 cut(s)	874
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	3 cut(s)	3, 583, 770
PciSI	GCTCTTC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	613, 636, 832
Pfl23II	CGTACG	1 cut(s)	108
PleI	GAGTC	2 cut(s)	492, 772
PpsI	GAGTC	2 cut(s)	492, 772
Ppu21I	YACGTR	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	723
PspEI	GGTNACC	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	1 cut(s)	723
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	3 cut(s)	152, 193, 555
PstI	CTGCAG	1 cut(s)	866
PstNI	CAGNNNCTG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	2 cut(s)	110, 671
RsaNI	GTAC	2 cut(s)	109, 670
RseI	CAYNNNNRTG	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	533
Sau3AI	GATC	5 cut(s)	144, 363, 405, 478, 629
Sau96I	GGNCC	3 cut(s)	152, 193, 555
SchI	GAGTC	2 cut(s)	493, 773
ScrFI	CCNGG	2 cut(s)	725, 827
SfcI	CTRYAG	1 cut(s)	862
SinI	GGWCC	3 cut(s)	152, 193, 555
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
Sse9I	AATT	4 cut(s)	417, 432, 467, 797
SspMI	CTAG	1 cut(s)	875
StyD4I	CCNGG	2 cut(s)	723, 825
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	108, 809
TaiI	ACGT	6 cut(s)	10, 47, 306, 312, 570, 675
TaqI	TCGA	4 cut(s)	143, 312, 366, 634
TaqII	GACCGA	2 cut(s)	140, 869
TasI	AATT	4 cut(s)	417, 432, 467, 797
TauI	GCSGC	6 cut(s)	257, 426, 477, 605, 608, 626
TfiI	GAWTC	3 cut(s)	613, 636, 832
TscAI	CASTG	4 cut(s)	25, 658, 797, 934
TseFI	GTSAC	3 cut(s)	3, 583, 770
TseI	GCWGC	6 cut(s)	97, 532, 590, 820, 906, 943
Tsp45I	GTSAC	3 cut(s)	3, 583, 770
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	3 cut(s)	118, 157, 429
TspRI	CASTG	4 cut(s)	25, 658, 797, 934
VpaK11BI	GGWCC	3 cut(s)	152, 193, 555
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	417
XspI	CTAG	1 cut(s)	875
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.