Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Forward (+)

62933169 .. 62933501

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAGCAAAAAAAGGAGGGGCCACGTGAACTGGAGGTGTACGAGCAGGGTATGCCCAAGACTGAGCTTTGCTTGAATTGGCAGGACTCTGGTTACTGCCGTTGCAAAGACCACTGCAAATTTGCTCACGGCATGGAGGAGCTGCGCCCGGTGAATCGCCACCCGCTCTACAAGACCAAGGTCTGCCAATATTGGCTTGCCGATGAGCCCTGTGGATTCGGCCGTCGCTGCCATTTTCGCCACACGTGCACTCACTTGAGGACGAAAGTAGTAGCTGGTGACAATAATAAACCCAGCAGGCCAATCAGGTACAATATGATGAAGGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

110

Amino Acids

13.12

Weight (kDa)

9.08

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	119
AcvI	CACGTG	2 cut(s)	26, 246
AfaI	GTAC	2 cut(s)	41, 311
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	3 cut(s)	67, 142, 275
AluI	AGCT	3 cut(s)	67, 142, 275
Alw21I	GWGCWC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	247
AoxI	GGCC	3 cut(s)	20, 220, 299
ApaLI	GTGCAC	1 cut(s)	247
ApeKI	GCWGC	3 cut(s)	4, 142, 228
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	163, 290
BaeGI	GKGCMC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	210
BbrPI	CACGTG	2 cut(s)	26, 246
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	16, 129, 215
BceAI	ACGGC	3 cut(s)	84, 145, 207
BcnI	CCSGG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	5, 143, 229
BlsI	GCNGC	3 cut(s)	6, 144, 230
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	149
BoxI	GACNNNNGTC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	149
BsaAI	YACGTR	2 cut(s)	26, 246
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	251
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	16, 129, 215
BseYI	CCCAGC	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	22, 222, 301
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	149
BsnI	GGCC	3 cut(s)	22, 222, 301
Bsp1286I	GDGCHC	2 cut(s)	210, 251
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	3 cut(s)	22, 222, 301
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstBAI	YACGTR	2 cut(s)	26, 246
BstC8I	GCNNGC	2 cut(s)	198, 299
BstDEI	CTNAG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	147
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 228, 237, 246
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	16, 129, 215
BstZI	CGGCCG	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	22, 222, 301
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	198, 299
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	40, 310
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	22, 67, 142, 196, 208, 222, 275, 301
CviKI_1	RGCY	8 cut(s)	22, 67, 142, 196, 208, 222, 275, 301
CviQI	GTAC	2 cut(s)	40, 310
DdeI	CTNAG	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	220
Eco72I	CACGTG	2 cut(s)	26, 246
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	136
FaiI	YATR	3 cut(s)	53, 134, 317
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	5, 143, 229
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	5, 143, 229
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	5, 143, 229
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	22, 222, 301
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	86, 154, 216
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	163, 290
Hpy166II	GTNNAC	3 cut(s)	29, 40, 249
Hpy8I	GTNNAC	3 cut(s)	29, 40, 249
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	25, 245
HpyCH4V	TGCA	4 cut(s)	4, 105, 117, 249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 228, 237, 246
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	25, 245
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	3 cut(s)	16, 129, 215
MaeII	ACGT	2 cut(s)	25, 245
MaeIII	GTNAC	2 cut(s)	92, 278
MbiI	CCGCTC	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	210, 251
MluCI	AATT	2 cut(s)	76, 119
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	10, 28, 130, 252
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	52, 228, 237, 246
NciI	CCSGG	1 cut(s)	149
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	154, 216
PkrI	GCNGC	3 cut(s)	6, 144, 230
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	2 cut(s)	26, 246
PmlI	CACGTG	2 cut(s)	26, 246
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	2 cut(s)	26, 246
PshAI	GACNNNNGTC	1 cut(s)	179
PspCI	CACGTG	2 cut(s)	26, 246
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	41, 311
RsaNI	GTAC	2 cut(s)	40, 310
SatI	GCNGC	3 cut(s)	5, 143, 229
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	210, 251
SetI	ASST	8 cut(s)	28, 39, 69, 144, 183, 248, 277, 311
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	76, 119
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	2 cut(s)	28, 248
TasI	AATT	2 cut(s)	76, 119
TfiI	GAWTC	2 cut(s)	154, 216
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	4, 142, 228
Tsp45I	GTSAC	1 cut(s)	278
TspRI	CASTG	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.