Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Reverse (-)

4724 .. 5056

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgcagcaaaaggtgtacgttcaaggagggaagaaagaggaagtgccacttgaactggaggtgttcaaccagggaatgttcaagactgaactctgcaacaaatggcaggagtctggtgactgcccctacaaagaccactgccaatttgctcacggtgtggaggagctgcgcccggtgattcgccacccgcgctacaagaccgaggtctgcagaatggtgctagccggtgatgtctgtccatatggccatcgctgccattttcgccacgcgctcactgaggaggagaaggagcttgctggtggcaacaatacgcccagcaggccaatcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

110

Amino Acids

12.77

Weight (kDa)

7.0

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	190, 269
AciI	CCGC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	244
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	23, 53, 67, 82
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	166, 292
AluI	AGCT	2 cut(s)	166, 292
AoxI	GGCC	2 cut(s)	244, 320
ApeKI	GCWGC	3 cut(s)	4, 166, 252
AspLEI	GCGC	3 cut(s)	171, 192, 271
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	128, 187, 239
AsuNHI	GCTAGC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	16, 153, 239
BccI	CCATC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	5, 167, 253
BlsI	GCNGC	3 cut(s)	6, 168, 254
Bme1390I	CCNGG	2 cut(s)	71, 173
BmrFI	CCNGG	2 cut(s)	71, 173
BmtI	GCTAGC	1 cut(s)	224
BoxI	GACNNNNGTC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	70, 201
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	70, 201
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	3 cut(s)	176, 293, 296
BseXI	GCAGC	3 cut(s)	16, 153, 239
BseYI	CCCAGC	1 cut(s)	314
Bsh1236I	CGCG	2 cut(s)	190, 269
BshFI	GGCC	2 cut(s)	246, 322
BsiSI	CCGG	2 cut(s)	173, 225
BsnI	GGCC	2 cut(s)	246, 322
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	246, 322
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	190, 269
BspMAI	CTGCAG	1 cut(s)	212
BspOI	GCTAGC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	70, 201
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	222, 294, 320
BstDEI	CTNAG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	190, 269
BstHHI	GCGC	3 cut(s)	171, 192, 271
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 252, 261, 319
BstNI	CCWGG	1 cut(s)	71
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	69, 171
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	2 cut(s)	190, 269
BstV1I	GCAGC	3 cut(s)	16, 153, 239
BsuRI	GGCC	2 cut(s)	246, 322
BtgZI	GCGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 273
Cac8I	GCNNGC	3 cut(s)	222, 294, 320
CfoI	GCGC	3 cut(s)	171, 192, 271
Cfr10I	RCCGGY	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	5 cut(s)	166, 224, 246, 292, 322
CviKI_1	RGCY	5 cut(s)	166, 224, 246, 292, 322
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	69
FaiI	YATR	2 cut(s)	241, 243
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FauI	CCCGC	1 cut(s)	195
FauNDI	CATATG	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	5, 167, 253
Fsp4HI	GCNGC	3 cut(s)	5, 167, 253
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	3 cut(s)	170, 191, 270
GluI	GCNGC	3 cut(s)	5, 167, 253
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	246, 322
HapII	CCGG	2 cut(s)	173, 225
HhaI	GCGC	3 cut(s)	171, 192, 271
Hin6I	GCGC	3 cut(s)	169, 190, 269
HinP1I	GCGC	3 cut(s)	169, 190, 269
HinfI	GANTC	2 cut(s)	110, 178
HpaII	CCGG	2 cut(s)	173, 225
HphI	GGTGA	3 cut(s)	128, 187, 239
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	4, 96, 210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 252, 261, 319
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	18
HspAI	GCGC	3 cut(s)	169, 190, 269
LmnI	GCTCC	2 cut(s)	163, 289
Lsp1109I	GCAGC	3 cut(s)	16, 153, 239
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	1 cut(s)	143
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	20, 31, 52, 154, 196, 271, 274
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	2 cut(s)	173, 225
MspR9I	CCNGG	2 cut(s)	71, 173
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	190, 269
MwoI	GCNNNNNNNGC	4 cut(s)	189, 252, 261, 319
NciI	CCSGG	1 cut(s)	173
NdeI	CATATG	1 cut(s)	241
NheI	GCTAGC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	6, 168, 254
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SatI	GCNGC	3 cut(s)	5, 167, 253
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	71, 173
SetI	ASST	7 cut(s)	15, 21, 63, 168, 207, 294, 332
SfcI	CTRYAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	69, 171
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	21
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	2 cut(s)	143, 280
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	3 cut(s)	4, 166, 252
Tsp45I	GTSAC	1 cut(s)	116
TspRI	CASTG	2 cut(s)	143, 280
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.