Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Forward (+)

44722901 .. 44723645

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTATCTTCAAGTACGAGTCCGAGTTTACCTCTGTCATCCCCCCAGCTAGGTTGTTCAAGGCTTTCGTTCTCGATGCTGACAACCTCATCCCCAAGATTGCCCCACAGGCAGTTAAGTCCGCTGAGATCCTTGAAGGAGATGGTGGTGCTGGAACCATCAAGAAGATCACCTTCGGTGAAGGTAGCACTTACAGCTATGTGAAGCACAGAATTGATAGCATTGACAAGGAGAACTTTGCCTACAGCTATAGTGTGATTGAGGGAGCTCCCGACTCAATTGAGAAGATCTGCTACGAGACTAAGTTGGTGGCATCCGGCAGTGGTACCATCATCAAGAGCACCAGTGAATACCATGTCAAGGGTGATGTTGAGATCAAGGAAGAGCACGTCAAGGCCGGGAAAGAGAAGGCTTCTCACCTCTTCAAGGTCATTGAGAACTACCTCTTGGAGCACCATGATGCCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

157

Amino Acids

17.36

Weight (kDa)

5.69

Isoelectric Point (pI)

21.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 152	5.5e-22	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	124
AfaI	GTAC	2 cut(s)	17, 328
AfiI	CCNNNNNNNGG	3 cut(s)	51, 361, 427
AgsI	TTSAA	4 cut(s)	13, 61, 137, 427
AjiI	CACGTC	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	4 cut(s)	50, 198, 249, 269
AluI	AGCT	4 cut(s)	50, 198, 249, 269
Alw21I	GWGCWC	4 cut(s)	271, 344, 390, 456
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	396
Asp718I	GGTACC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	163, 191, 377, 410
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	271
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
Bbv12I	GWGCWC	4 cut(s)	271, 344, 390, 456
BccI	CCATC	3 cut(s)	137, 167, 338
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	244, 250
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	157, 328
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	3 cut(s)	67, 323, 451
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 361, 427
Bse1I	ACTGG	1 cut(s)	345
BseGI	GGATG	3 cut(s)	39, 90, 314
BseLI	CCNNNNNNNGG	3 cut(s)	51, 361, 427
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	398
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	4 cut(s)	271, 344, 390, 456
BsiSI	CCGG	2 cut(s)	318, 399
BslI	CCNNNNNNNGG	3 cut(s)	51, 361, 427
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	4 cut(s)	271, 344, 390, 456
Bsp143I	GATC	4 cut(s)	129, 168, 288, 375
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	157, 328
BspPI	GGATC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	4 cut(s)	129, 168, 288, 375
Bst6I	CTCTTC	2 cut(s)	378, 428
BstDEI	CTNAG	2 cut(s)	126, 303
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	39, 90, 314
BstKTI	GATC	4 cut(s)	132, 171, 291, 378
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	129, 168, 288, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 195
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	244, 250
BstX2I	RGATCY	2 cut(s)	129, 288
BstYI	RGATCY	2 cut(s)	129, 288
BsuRI	GGCC	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	39, 90, 314
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 352
Csp6I	GTAC	2 cut(s)	16, 327
CviAII	CATG	2 cut(s)	356, 458
CviJI	RGCY	7 cut(s)	50, 65, 198, 249, 269, 398, 413
CviKI_1	RGCY	7 cut(s)	50, 65, 198, 249, 269, 398, 413
CviQI	GTAC	2 cut(s)	16, 327
DdeI	CTNAG	2 cut(s)	126, 303
DpnI	GATC	4 cut(s)	131, 170, 290, 377
DpnII	GATC	4 cut(s)	129, 168, 288, 375
Eam1104I	CTCTTC	2 cut(s)	378, 428
EarI	CTCTTC	2 cut(s)	378, 428
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	2 cut(s)	359, 461
FaiI	YATR	4 cut(s)	201, 252, 357, 459
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 221, 253
FatI	CATG	2 cut(s)	355, 457
FokI	GGATG	3 cut(s)	26, 77, 301
FriOI	GRGCYC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	2 cut(s)	318, 399
Hin1II	CATG	2 cut(s)	359, 461
HinfI	GANTC	2 cut(s)	20, 275
HpaII	CCGG	2 cut(s)	318, 399
HphI	GGTGA	4 cut(s)	163, 191, 377, 410
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	4 cut(s)	74, 163, 272, 337
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	4 cut(s)	131, 176, 184, 403
HpyCH4IV	ACGT	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 195
HpyF3I	CTNAG	2 cut(s)	126, 303
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	359, 461
KpnI	GGTACC	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	129, 168, 288, 375
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	266, 274, 451
LpnPI	CCDG	6 cut(s)	60, 95, 138, 331, 358, 412
LweI	GCATC	3 cut(s)	67, 323, 451
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	390
MalI	GATC	4 cut(s)	131, 170, 290, 377
MboI	GATC	4 cut(s)	129, 168, 288, 375
MboII	GAAGA	4 cut(s)	178, 298, 395, 415
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	2 cut(s)	129, 288
MhlI	GDGCHC	4 cut(s)	271, 344, 390, 456
MluCI	AATT	2 cut(s)	213, 279
MlyI	GAGTC	2 cut(s)	29, 269
MnlI	CCTC	5 cut(s)	43, 98, 256, 431, 455
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	318, 399
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	110, 195
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	4 cut(s)	129, 168, 288, 375
NlaIII	CATG	2 cut(s)	359, 461
NlaIV	GGNNCC	2 cut(s)	157, 328
PciSI	GCTCTTC	1 cut(s)	378
PleI	GAGTC	2 cut(s)	28, 269
PpsI	GAGTC	2 cut(s)	28, 269
Psp124BI	GAGCTC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	157, 328
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PsuI	RGATCY	2 cut(s)	129, 288
RsaI	GTAC	2 cut(s)	17, 328
RsaNI	GTAC	2 cut(s)	16, 327
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	129, 168, 288, 375
SchI	GAGTC	2 cut(s)	29, 269
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	4 cut(s)	271, 344, 390, 456
SfaNI	GCATC	3 cut(s)	67, 323, 451
SfcI	CTRYAG	2 cut(s)	244, 250
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	213, 279
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	398
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	213, 279
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	328, 352
TspRI	CASTG	2 cut(s)	328, 352
XagI	CCTNNNNNAGG	1 cut(s)	425
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.