Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005268

Physical Location & Seq

Genomic Coordinates Forward (+)

6068929 .. 6069465

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10371.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCTGGCCGAAGCAAGCCAACGCCGATCAAAGCATCCGGCACCGAAAGAGATTGGAATTTACAGAAAGAGATCGAAGCTTCCTCAAGCTCTGTGGCGAGCCAGCCAAGGTCGCCGTTTGGGATCGTCAACGGGATTCGTGGCCTGTCAATTGACGGCAAGGAGGAAAAGGAATTGACCGATCACAGTCAGACGAGTGACGTCATGGACAAGGAAAACACCAAGAATGTTAATGTGGAGAGGATTGCGCTCCCGAGGAGCATATCGGTAAGGTCCAACGGCTACGTGAAGCTTCCTCCGGTCACCGCAGCTACCAACGCCGCCGCTCGGACTAGGAACGCGGCCAGATCTGGAACCGCCAAGCCAGTCGGTGCTTTAGTGGTAATTTTAATCAAATTGCGCTTATGTTTAATTGGAATTTACATGGAGTTCTTACTGTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

149

Amino Acids

16.01

Weight (kDa)

9.72

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200 AT1G68200
fragaria_vesca	FvH4_3g10371 FvH4_4g26520
malus_domestica	MD13G1034100.v1.1 MD16G1035800.v1.1
prunus_persica	Prupe.1G318500_v2.0.a1 Prupe.1G318500_v2.0.a1
pyrus_communis	pycom13g02940 pycom16g03070
rosa_chinensis	RchiOBHm_Chr4g0434161
rosa_laevigata	RLG00000006696
rosa_multiflora	Rmu_co8381953.1_g000001 Rmu_co8493783.1_g000001 Rmu_sc0000459.1_g000001 Rmu_sc0000609.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375550 Rroxscaffold_5G00383300
rosa_rugosa	Rorug04G0274700
rosa_samantha	Rh4AG329600 Rh4BG337200 Rh4CG352600 Rh4DG333200
rosa_wichuraiana	Rw0G007000 Rw4G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	1 cut(s)	341
AciI	CCGC	5 cut(s)	306, 321, 324, 341, 357
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	7, 342
AcsI	RAATTY	2 cut(s)	58, 417
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	4 cut(s)	80, 90, 292, 311
AluI	AGCT	4 cut(s)	80, 90, 292, 311
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	3 cut(s)	7, 142, 342
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	58, 417
AspLEI	GCGC	2 cut(s)	250, 402
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	320
BceAI	ACGGC	3 cut(s)	100, 172, 295
BciT130I	CCWGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	333
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	4 cut(s)	309, 321, 324, 342
BlsI	GCNGC	4 cut(s)	310, 322, 325, 343
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	43, 355
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	107, 254
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	107, 254
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	9, 144, 344
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	39, 299
BslI	CCNNNNNNNGG	1 cut(s)	327
BsnI	GGCC	3 cut(s)	9, 144, 344
BsoBI	CYCGRG	1 cut(s)	253
Bsp143I	GATC	5 cut(s)	27, 72, 123, 181, 347
BspACI	CCGC	5 cut(s)	306, 321, 324, 341, 357
BspANI	GGCC	3 cut(s)	9, 144, 344
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	43, 355
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	107, 254
BssMI	GATC	5 cut(s)	27, 72, 123, 181, 347
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	188, 438
BstACI	GRCGYC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	17, 100, 104
BstEII	GGTNACC	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	250, 402
BstKTI	GATC	5 cut(s)	30, 75, 126, 184, 350
BstMBI	GATC	5 cut(s)	27, 72, 123, 181, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 317
BstNI	CCWGG	1 cut(s)	6
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	4
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	9, 144, 344
BtsCI	GGATG	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	17, 100, 104
CfoI	GCGC	2 cut(s)	250, 402
Cfr13I	GGNCC	1 cut(s)	273
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	2 cut(s)	205, 424
DpnI	GATC	5 cut(s)	29, 74, 125, 183, 349
DpnII	GATC	5 cut(s)	27, 72, 123, 181, 347
EaeI	YGGCCR	2 cut(s)	7, 342
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	208, 427
FaiI	YATR	4 cut(s)	206, 263, 406, 425
FatI	CATG	2 cut(s)	204, 423
Fnu4HI	GCNGC	4 cut(s)	309, 321, 324, 342
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	309, 321, 324, 342
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	249, 401
GluI	GCNGC	4 cut(s)	309, 321, 324, 342
HaeIII	GGCC	3 cut(s)	9, 144, 344
HapII	CCGG	2 cut(s)	39, 299
HhaI	GCGC	2 cut(s)	250, 402
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	208, 427
Hin6I	GCGC	2 cut(s)	248, 400
HinP1I	GCGC	2 cut(s)	248, 400
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	78, 290
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	39, 299
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	192, 330
Hpy188III	TCNNGA	2 cut(s)	253, 351
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	188, 438
HpyCH4IV	ACGT	2 cut(s)	201, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 317
HpySE526I	ACGT	2 cut(s)	201, 285
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	208, 427
HspAI	GCGC	2 cut(s)	248, 400
Kzo9I	GATC	5 cut(s)	27, 72, 123, 181, 347
LmnI	GCTCC	2 cut(s)	255, 258
LpnPI	CCDG	8 cut(s)	18, 52, 116, 158, 312, 336, 358, 378
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	2 cut(s)	201, 285
MaeIII	GTNAC	2 cut(s)	197, 301
MalI	GATC	5 cut(s)	29, 74, 125, 183, 349
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	5 cut(s)	27, 72, 123, 181, 347
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	7 cut(s)	58, 150, 173, 384, 395, 411, 417
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	94, 157, 234, 249, 306
MseI	TTAA	3 cut(s)	231, 389, 410
MspI	CCGG	2 cut(s)	39, 299
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	112, 317
NdeII	GATC	5 cut(s)	27, 72, 123, 181, 347
NlaIII	CATG	2 cut(s)	208, 427
NlaIV	GGNNCC	2 cut(s)	43, 355
NmuCI	GTSAC	2 cut(s)	197, 301
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	310, 322, 325, 343
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	43, 355
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	231, 389, 410
SatI	GCNGC	4 cut(s)	309, 321, 324, 342
Sau3AI	GATC	5 cut(s)	27, 72, 123, 181, 347
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	8 cut(s)	82, 92, 113, 204, 275, 288, 294, 313
SfaNI	GCATC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	7 cut(s)	58, 150, 173, 384, 395, 411, 417
SsiI	CCGC	5 cut(s)	306, 321, 324, 341, 357
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	188, 438
TaiI	ACGT	2 cut(s)	204, 288
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	7 cut(s)	58, 150, 173, 384, 395, 411, 417
TauI	GCSGC	3 cut(s)	323, 326, 344
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	231, 389, 410
Tru9I	TTAA	3 cut(s)	231, 389, 410
TseFI	GTSAC	2 cut(s)	197, 301
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	2 cut(s)	197, 301
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	2 cut(s)	58, 417
XspI	CTAG	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.